Rh1AG171800

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015975
Physical Location & Seq
Forward (+)
32964832 .. 32967066
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG171800.1

Sequence Viewer

Length: 525 bp
ATGCAAGATATTATTCTAGCAGTTGCTACACGATTGGCAGAATGGACTGTGAGACCAATTTGGCAGCATTTCAGTTATGTAATTCAGTACAAGAGCAATATTGAGCATCTCACCAGACAGGTTCAGGAACTGCATGATAAAAGATATGGAGTGGACATGGAGGTGAAACCTGCTACAGAAGCTTTGAAGATTATTGATCCTGGAGTTAAACATTGGCTGGCTGAGGTAGACAAGCTGATAGGAGAAAAGGAGAAGTGTTTCAATGAAGAGACTGTAGCAACAAAGGCAGCATGCTGTAATGGGTCTTTTCCAGATTTGAAGTGCCGTTATTCTTTAGGAAGGAAAGCTAAGAAGATGACTGTGGTTTTTGATTACCTCCTTGCTAAAGATCTCAGGACTATAGCGCATCCTGCTCTTCCCCCAGAGGTGGAATTTCAACCCACACAATATTCTGAGGATTCTTCTCAGCTTGCAACCAACTTCCAGGAAGGTGCCAGCTCCTCAGAAACATCTAACCAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

174

Amino Acids

19.8

Weight (kDa)

5.97

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32460
fragaria_vesca FvH4_7g07910
malus_domestica MD02G1229100.v1.1 MD07G1083000.v1.1
prunus_persica Prupe.2G109900_v2.0.a1 Prupe.2G110100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341401
rosa_laevigata RLG00000029088
rosa_multiflora Rmu_sc0000047.1_g000007
rosa_roxburghii Rroxscaffold_4G00312040
rosa_samantha Rh1AG171700 Rh1AG171800 Rh1BG139500 Rh1CG159600 Rh1DG171900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 491
AccI GTMKAC 1 cut(s) 228
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 2 cut(s) 431, 519
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 4 cut(s) 187, 262, 319, 437
AjnI CCWGG 2 cut(s) 199, 483
AluBI AGCT 5 cut(s) 182, 235, 347, 469, 498
AluI AGCT 5 cut(s) 182, 235, 347, 469, 498
Alw26I GTCTC 2 cut(s) 46, 263
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 64, 287
ApoI RAATTY 2 cut(s) 431, 519
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 103, 175
BanI GGYRCC 1 cut(s) 491
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 76, 299
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 2 cut(s) 201, 485
BcoDI GTCTC 2 cut(s) 46, 263
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 3 cut(s) 174, 273, 399
BfuAI ACCTGC 1 cut(s) 178
BglII AGATCT 1 cut(s) 388
BisI GCNGC 2 cut(s) 65, 288
BlsI GCNGC 2 cut(s) 66, 289
Bme1390I CCNGG 2 cut(s) 201, 485
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 2 cut(s) 201, 485
BmsI GCATC 2 cut(s) 115, 415
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 427
BseBI CCWGG 2 cut(s) 201, 485
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMII CTCAG 5 cut(s) 213, 406, 444, 479, 516
BseRI GAGGAG 1 cut(s) 490
BseXI GCAGC 2 cut(s) 76, 299
BshNI GGYRCC 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 2 cut(s) 46, 263
Bso31I GGTCTC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 196, 388
BspCNI CTCAG 5 cut(s) 214, 405, 445, 478, 515
BspLI GGNNCC 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 46
BssMI GATC 2 cut(s) 196, 388
Bst2UI CCWGG 2 cut(s) 201, 485
Bst4CI ACNGT 3 cut(s) 49, 274, 361
Bst6I CTCTTC 2 cut(s) 261, 420
BstC8I GCNNGC 4 cut(s) 219, 292, 471, 496
BstDEI CTNAG 6 cut(s) 222, 348, 392, 453, 465, 502
BstF5I GGATG 1 cut(s) 406
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 2 cut(s) 199, 391
BstMAI GTCTC 2 cut(s) 46, 263
BstMBI GATC 2 cut(s) 196, 388
BstMWI GCNNNNNNNGC 3 cut(s) 179, 284, 410
BstNI CCWGG 2 cut(s) 201, 485
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 199, 483
BstSFI CTRYAG 3 cut(s) 174, 273, 399
BstV1I GCAGC 2 cut(s) 76, 299
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BtsCI GGATG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 4 cut(s) 219, 292, 471, 496
CaiI CAGNNNCTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 88
CviAII CATG 3 cut(s) 134, 157, 291
CviJI RGCY 7 cut(s) 182, 217, 221, 235, 347, 469, 498
CviKI_1 RGCY 7 cut(s) 182, 217, 221, 235, 347, 469, 498
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 6 cut(s) 222, 348, 392, 453, 465, 502
DpnI GATC 2 cut(s) 198, 390
DpnII GATC 2 cut(s) 196, 388
Eam1104I CTCTTC 2 cut(s) 261, 420
EarI CTCTTC 2 cut(s) 261, 420
Eco31I GGTCTC 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 199, 483
FaeI CATG 3 cut(s) 137, 160, 294
FaiI YATR 6 cut(s) 78, 135, 147, 158, 292, 401
FatI CATG 3 cut(s) 133, 156, 290
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 65, 288
FokI GGATG 1 cut(s) 393
Fsp4HI GCNGC 2 cut(s) 65, 288
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 405
GluI GCNGC 2 cut(s) 65, 288
GsuI CTGGAG 1 cut(s) 222
HhaI GCGC 1 cut(s) 406
Hin1II CATG 3 cut(s) 137, 160, 294
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 1 cut(s) 458
HphI GGTGA 2 cut(s) 103, 175
Hpy166II GTNNAC 2 cut(s) 154, 229
Hpy188I TCNGA 2 cut(s) 454, 505
Hpy188III TCNNGA 3 cut(s) 125, 311, 394
Hpy8I GTNNAC 2 cut(s) 154, 229
HpyAV CCTTC 2 cut(s) 333, 482
HpyCH4III ACNGT 3 cut(s) 49, 274, 361
HpyCH4V TGCA 3 cut(s) 4, 133, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 284, 410
HpyF3I CTNAG 6 cut(s) 222, 348, 392, 453, 465, 502
Hsp92II CATG 3 cut(s) 137, 160, 294
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 2 cut(s) 196, 388
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 503
Lsp1109I GCAGC 2 cut(s) 76, 299
LweI GCATC 2 cut(s) 115, 415
MaeI CTAG 1 cut(s) 17
MalI GATC 2 cut(s) 198, 390
MboI GATC 2 cut(s) 196, 388
MboII GAAGA 5 cut(s) 199, 278, 364, 407, 453
MflI RGATCY 1 cut(s) 388
MluCI AATT 4 cut(s) 57, 81, 431, 519
MnlI CCTC 6 cut(s) 154, 217, 386, 418, 448, 511
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 201, 485
MvaI CCWGG 2 cut(s) 201, 485
MwoI GCNNNNNNNGC 3 cut(s) 179, 284, 410
NdeII GATC 2 cut(s) 196, 388
NlaIII CATG 3 cut(s) 137, 160, 294
NlaIV GGNNCC 1 cut(s) 493
NspI RCATGY 1 cut(s) 294
PaeI GCATGC 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 458
PfoI TCCNGGA 2 cut(s) 199, 483
PkrI GCNGC 2 cut(s) 66, 289
Psp6I CCWGG 2 cut(s) 199, 483
PspGI CCWGG 2 cut(s) 199, 483
PspN4I GGNNCC 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 65, 288
Sau3AI GATC 2 cut(s) 196, 388
ScrFI CCNGG 2 cut(s) 201, 485
SfaNI GCATC 2 cut(s) 115, 415
SfcI CTRYAG 3 cut(s) 174, 273, 399
SmiMI CAYNNNNRTG 1 cut(s) 161
SphI GCATGC 1 cut(s) 294
Sse9I AATT 4 cut(s) 57, 81, 431, 519
SspI AATATT 2 cut(s) 100, 449
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 199, 483
TaaI ACNGT 3 cut(s) 49, 274, 361
TasI AATT 4 cut(s) 57, 81, 431, 519
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 2 cut(s) 64, 287
TspDTI ATGAA 1 cut(s) 279
XapI RAATTY 2 cut(s) 431, 519
XceI RCATGY 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.