MD02G1229100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015975
Physical Location & Seq
Forward (+)
27234103 .. 27236516
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1229100.v1.1.491

Sequence Viewer

Length: 243 bp
ATGGATAAAGAAGGACTTGGCAAGGAGGCTCCTGAAGAAGTGACTCGTGAGTCGCTTATTTCCATTTCTTACTCTGAACCAGAGAAGAATCTGACTTCAAATCTCTCTTCTGGAAAGTCGAATGGTGAGGCAATAGATGCTGATGGAGAAGAGAAGTTTAGGTCTGAACTGATCTCCATTTCCTATGCAGAGTCACCGGAAGTTGGAGGCTTACCGGTTACCATGGGAGAACTTAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.52

Weight (kDa)

4.34

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6865 PF21737 4 - 68 2.2e-26 Family of unknown function (DUF6865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32460
fragaria_vesca FvH4_7g07910
malus_domestica MD02G1229100.v1.1 MD07G1083000.v1.1
prunus_persica Prupe.2G109900_v2.0.a1 Prupe.2G110100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341401
rosa_laevigata RLG00000029088
rosa_multiflora Rmu_sc0000047.1_g000007
rosa_roxburghii Rroxscaffold_4G00312040
rosa_samantha Rh1AG171700 Rh1AG171800 Rh1BG139500 Rh1CG159600 Rh1DG171900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 203
AgeI ACCGGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 99
AsiGI ACCGGT 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 137, 186
BauI CACGAG 1 cut(s) 45
BccI CCATC 1 cut(s) 137
BfaI CTAG 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 2 cut(s) 196, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 214
BsiSI CCGG 2 cut(s) 197, 215
BslI CCNNNNNNNGG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 171
Bsp19I CCATGG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 45
Bst6I CTCTTC 2 cut(s) 112, 144
BstAPI GCANNNNNTGC 1 cut(s) 137
BstDSI CCRYGG 1 cut(s) 222
BstEII GGTNACC 1 cut(s) 217
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 214
CspAI ACCGGT 1 cut(s) 214
CviAII CATG 1 cut(s) 223
CviJI RGCY 3 cut(s) 29, 210, 240
CviKI_1 RGCY 3 cut(s) 29, 210, 240
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 112, 144
EarI CTCTTC 2 cut(s) 112, 144
Eco130I CCWWGG 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 54
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 226
FaiI YATR 2 cut(s) 186, 224
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 1 cut(s) 222
FspBI CTAG 1 cut(s) 241
HapII CCGG 2 cut(s) 197, 215
Hin1II CATG 1 cut(s) 226
HinfI GANTC 4 cut(s) 43, 50, 88, 191
HpaII CCGG 2 cut(s) 197, 215
HphI GGTGA 2 cut(s) 137, 186
Hpy188I TCNGA 3 cut(s) 76, 93, 166
Hpy188III TCNNGA 3 cut(s) 32, 47, 111
HpyAV CCTTC 1 cut(s) 5
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 5 cut(s) 45, 93, 96, 210, 228
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 40, 192, 217
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 4 cut(s) 47, 97, 99, 161
MlyI GAGTC 3 cut(s) 37, 59, 200
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 19, 121, 200
MseI TTAA 1 cut(s) 234
MspI CCGG 2 cut(s) 197, 215
MwoI GCNNNNNNNGC 1 cut(s) 137
NcoI CCATGG 1 cut(s) 222
NdeII GATC 1 cut(s) 171
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 40, 192
PfeI GAWTC 1 cut(s) 88
PinAI ACCGGT 1 cut(s) 214
PleI GAGTC 3 cut(s) 37, 58, 199
PpsI GAGTC 3 cut(s) 37, 58, 199
PspEI GGTNACC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 171
SchI GAGTC 3 cut(s) 37, 59, 200
SetI ASST 1 cut(s) 164
SfaNI GCATC 1 cut(s) 127
SspMI CTAG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 222
TaqI TCGA 1 cut(s) 119
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 2 cut(s) 40, 192
Tsp45I GTSAC 2 cut(s) 40, 192
XspI CTAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.