Rh1DG171900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015975
Physical Location & Seq
Forward (+)
35430652 .. 35433524
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG171900.1

Sequence Viewer

Length: 279 bp
ATGGATAAAGGAGTAACCGGAAAGGAGGCCCTGAAGGAAGTGACCCGTGAGTCGCTTATTGCCATTTCTTACTCTGAACCAGAGAAGAATCTCACTTCTGATAAGTTGAATGGTGAAACTCTGGTTAAAGCAATAGATTCTGATGGAGAAGACAAGTTCAGGTCTGAACTGATCTCCATTTCCTATACGCCGTCTTCAGAATTTGAAGGCTTTCCTGTTACCAATGGAACACTGCAGAGTAGGAGAGAAAATGGGACCTTTGTGAAAGAAAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.19

Weight (kDa)

4.87

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6865 PF21737 6 - 68 1.6e-25 Family of unknown function (DUF6865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32460
fragaria_vesca FvH4_7g07910
malus_domestica MD02G1229100.v1.1 MD07G1083000.v1.1
prunus_persica Prupe.2G109900_v2.0.a1 Prupe.2G110100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341401
rosa_laevigata RLG00000029088
rosa_multiflora Rmu_sc0000047.1_g000007
rosa_roxburghii Rroxscaffold_4G00312040
rosa_samantha Rh1AG171700 Rh1AG171800 Rh1BG139500 Rh1CG159600 Rh1DG171900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 53, 180
AgsI TTSAA 2 cut(s) 109, 206
AoxI GGCC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 28, 255
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 156, 186
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 28, 255
BmiI GGNNCC 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 156, 186
BsaWI WCCGGW 1 cut(s) 17
BshFI GGCC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 171
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 237
BssMI GATC 1 cut(s) 171
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 233
BstV2I GAAGAC 2 cut(s) 156, 186
BsuRI GGCC 1 cut(s) 29
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 28, 255
CviJI RGCY 2 cut(s) 29, 210
CviKI_1 RGCY 2 cut(s) 29, 210
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 2 cut(s) 53, 180
EcoO109I RGGNCCY 2 cut(s) 28, 255
FaiI YATR 1 cut(s) 186
FaqI GGGAC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 18
HinfI GANTC 3 cut(s) 50, 88, 137
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 5 cut(s) 76, 100, 142, 166, 199
HpyAV CCTTC 2 cut(s) 28, 200
HpyCH4V TGCA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 171
LpnPI CCDG 6 cut(s) 31, 44, 93, 107, 145, 228
MaeIII GTNAC 3 cut(s) 13, 40, 217
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 3 cut(s) 97, 161, 186
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 1 cut(s) 126
MspI CCGG 1 cut(s) 18
NdeII GATC 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 88, 137
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 28, 255
PspPPI RGGWCCY 1 cut(s) 255
PstI CTGCAG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 2 cut(s) 28, 255
SchI GAGTC 1 cut(s) 59
SetI ASST 2 cut(s) 164, 260
SfcI CTRYAG 1 cut(s) 233
SgeI CNNG 9 cut(s) 30, 43, 57, 59, 92, 134, 166, 172, 227
SinI GGWCC 1 cut(s) 255
Sse9I AATT 1 cut(s) 200
TasI AATT 1 cut(s) 200
TfiI GAWTC 2 cut(s) 88, 137
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.