RLG00000029088

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015975
Physical Location & Seq
Reverse (-)
32664218 .. 32667453
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029088

Sequence Viewer

Length: 483 bp
ATGCTTGAAGGTTATTGTGATCCACGGAGGTGTCTACGGGTGGATCTAATTCATGGTGGTGAAATTCGTAGCATTGGCGCTTGTGGAGTTTCTAAGTCCAAAAATCAGTTTGGAGGTTCTCTAGGGAAAGATAAAATACGAAAGTTGGATAGGTCAAATACAGAGAGAATCTTCTTCACCCTTCTTCTTCTTCTTCCTCAACGCGGCTCTTGCGCTCAAGACCAAGCAGATCGACATTTTATGGATAAAGGAGTAACCGGAAAGGAGGCCCTGAAGGAAGTGACCCGTGAGTCGCTTATTGCCATTTCTTACTCTGAACCAGAGAAGAATCTCACTTCTGATAAGTTGAATGGTGAAACTCTGGTTAAAGCAATAGATTCTGATGGAGAAGACAAGTTCAGGTCTGAACTGATCTCCATTTCCTATACGCCGTCTTCAGAATTTGAAGGCTTTCCTGTTGCCAATGGTGAACTTAAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.67

Weight (kDa)

6.17

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6865 PF21737 86 - 148 7.2e-25 Family of unknown function (DUF6865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32460
fragaria_vesca FvH4_7g07910
malus_domestica MD02G1229100.v1.1 MD07G1083000.v1.1
prunus_persica Prupe.2G109900_v2.0.a1 Prupe.2G110100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341401
rosa_laevigata RLG00000029088
rosa_multiflora Rmu_sc0000047.1_g000007
rosa_roxburghii Rroxscaffold_4G00312040
rosa_samantha Rh1AG171700 Rh1AG171800 Rh1BG139500 Rh1CG159600 Rh1DG171900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 34
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 204
AclWI GGATC 2 cut(s) 14, 51
AcsI RAATTY 2 cut(s) 63, 440
AcuI CTGAAG 2 cut(s) 293, 420
AfiI CCNNNNNNNGG 1 cut(s) 203
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 3 cut(s) 8, 349, 446
AleI CACNNNNGTG 1 cut(s) 28
AlwI GGATC 2 cut(s) 14, 51
AoxI GGCC 1 cut(s) 267
ApoI RAATTY 2 cut(s) 63, 440
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 2 cut(s) 80, 215
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 4 cut(s) 71, 169, 365, 479
BbsI GAAGAC 2 cut(s) 396, 426
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 415
BfaI CTAG 2 cut(s) 122, 481
BfoI RGCGCY 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 473
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 268
BpiI GAAGAC 2 cut(s) 396, 426
BpuEI CTTGAG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 269
Bsp143I GATC 4 cut(s) 19, 43, 229, 411
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 269
BspFNI CGCG 1 cut(s) 204
BspPI GGATC 2 cut(s) 14, 51
BspTI CTTAAG 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 4 cut(s) 19, 43, 229, 411
BstAFI CTTAAG 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 80, 215
BstKTI GATC 4 cut(s) 22, 46, 232, 414
BstMBI GATC 4 cut(s) 19, 43, 229, 411
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstUI CGCG 1 cut(s) 204
BstV2I GAAGAC 2 cut(s) 396, 426
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 23
CfoI GCGC 2 cut(s) 80, 215
Cfr13I GGNCC 1 cut(s) 268
CviAII CATG 1 cut(s) 53
CviJI RGCY 4 cut(s) 207, 269, 450, 480
CviKI_1 RGCY 4 cut(s) 207, 269, 450, 480
DdeI CTNAG 1 cut(s) 93
DpnI GATC 4 cut(s) 21, 45, 231, 413
DpnII GATC 4 cut(s) 19, 43, 229, 411
DrdI GACNNNNNNGTC 1 cut(s) 289
DseDI GACNNNNNNGTC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 293, 420
EcoO109I RGGNCCY 1 cut(s) 268
FaeI CATG 1 cut(s) 56
FaiI YATR 3 cut(s) 54, 242, 426
FatI CATG 1 cut(s) 52
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 122, 481
GlaI GCGC 2 cut(s) 79, 214
GluI GCNGC 1 cut(s) 205
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 269
HapII CCGG 1 cut(s) 258
HhaI GCGC 2 cut(s) 80, 215
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 2 cut(s) 78, 213
HinP1I GCGC 2 cut(s) 78, 213
HinfI GANTC 4 cut(s) 168, 290, 328, 377
HpaII CCGG 1 cut(s) 258
HphI GGTGA 4 cut(s) 71, 169, 365, 479
Hpy166II GTNNAC 2 cut(s) 35, 470
Hpy188I TCNGA 5 cut(s) 316, 340, 382, 406, 439
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 35, 470
HpyAV CCTTC 3 cut(s) 191, 268, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 2 cut(s) 78, 213
Kzo9I GATC 4 cut(s) 19, 43, 229, 411
LpnPI CCDG 6 cut(s) 271, 284, 333, 347, 385, 468
MaeI CTAG 2 cut(s) 122, 481
MaeIII GTNAC 2 cut(s) 253, 280
MalI GATC 4 cut(s) 21, 45, 231, 413
MboI GATC 4 cut(s) 19, 43, 229, 411
MboII GAAGA 9 cut(s) 163, 166, 176, 179, 182, 185, 337, 401, 426
MflI RGATCY 1 cut(s) 43
MluCI AATT 3 cut(s) 48, 63, 440
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 4 cut(s) 21, 107, 207, 259
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 2 cut(s) 366, 474
MslI CAYNNNNRTG 2 cut(s) 28, 57
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeII GATC 4 cut(s) 19, 43, 229, 411
NlaIII CATG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 3 cut(s) 168, 328, 377
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 43
RseI CAYNNNNRTG 2 cut(s) 28, 57
SaqAI TTAA 2 cut(s) 366, 474
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 4 cut(s) 19, 43, 229, 411
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 299
SetI ASST 5 cut(s) 13, 32, 118, 155, 404
SmiMI CAYNNNNRTG 2 cut(s) 28, 57
SmlI CTYRAG 2 cut(s) 216, 473
SmoI CTYRAG 2 cut(s) 216, 473
Sse9I AATT 3 cut(s) 48, 63, 440
SsiI CCGC 1 cut(s) 204
SspMI CTAG 2 cut(s) 122, 481
TaqI TCGA 1 cut(s) 232
TasI AATT 3 cut(s) 48, 63, 440
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 3 cut(s) 168, 328, 377
Tru1I TTAA 2 cut(s) 366, 474
Tru9I TTAA 2 cut(s) 366, 474
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 40
Vha464I CTTAAG 1 cut(s) 473
XapI RAATTY 2 cut(s) 63, 440
XmiI GTMKAC 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 2 cut(s) 122, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.