Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014479

Physical Location & Seq

Genomic Coordinates Reverse (-)

11865229 .. 11867154

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTGATAATAAGGTCAATCTTTCGATTAATGGACAATCAAAAGTGCCTCCAGGTTTCAGATTCCATCCCACCGAAGAAGAACTTCTCCATTACTATCTCCGTAAGAAAGTTAACTCTCAAAAGATCGATCTTGATGTCATTCGTGAAGTTGATCTAAACAAGCTTGAGCCTTGGGATATTCAAGAGGAATGTAGAATCGGTTCAACGCCACAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTATCCAACCGGGACCAGGACGAACCGGGCAACAGTCGCTGGATTCTGGAAAGCTACCGGACGTGACAAAATCATCTGCAGTTGTGTCCGGAGAATTGGACTGAGGAAGACACTCGTGTTCTACAAAGGAAGAGCTCCTCACGGTCAGAAATCCGACTGGATCATGCATGAGTATCGCCTCGACGATACTCCAATGTCTAATGGCTATGCTGATGTTGTTACAGAAGATCCAATGAGCTATAACGAAGAAGGTTGGGTGGTATGTCGAGTGTTCAGGAAGAAGAACTATCAAAAGATTGACGATTGTCCTAAAATCACTCTATCTTCTTTACCTGATGACACGGAGGAAGAGAAGGGGCCCACCTTTCACAACACTCAAAACGTTACCGGTTTAGACCATGTTCTTCTCTACATGGACCGTACCGGTTCTAACATTTGCATGCCCGAGAGCCAAACAACGACTCAACATCAAGATGATGTCTTATTCATGCAACTCCCAAGTCTTGAGACACCTAAATCCGAGAGCCCGGTCGACCAAAGTTTCCTGACTCCAAGCAAACTCGATTTCTCTCCCGTTCAAGAGAAGATAACCGAAAGACCGGTTTGCAGCAACTGGGCTAGTCTTGACCGGCTCGTAGCTTGGCAATTGAACAATGGTCATCATAATCCGTGTCATCGTAAGAGTTTTGATGAAGAAGAAGAAAATGGTGATACTATGATGCAGCGATGGGATCTTCATTGGAATAATGATGATAATGTTGATCTTTGGAGTAGTTTCACTGAGTCTTCTTCGTCTTTAGACCCACTTCTTCATTTATCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

358

Amino Acids

41.52

Weight (kDa)

5.48

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 144	3.6e-45	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32770
fragaria_vesca	FvH4_5g10690
malus_domestica	MD06G1121400.v1.1 MD14G1137900.v1.1
prunus_persica	Prupe.5G131900_v2.0.a1
pyrus_communis	pycom06g11260 pycom14g11310
rosa_chinensis	RchiOBHm_Chr7g0187451
rosa_laevigata	RLG00000004780
rosa_multiflora	Rmu_sc0001230.1_g000011
rosa_roxburghii	Rroxscaffold_3G00267410
rosa_rugosa	Rorug06G0481700
rosa_samantha	Rh7AG086200 Rh7BG087700 Rh7CG087100 Rh7DG088700
rosa_wichuraiana	Rw7G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	783
AccIII	TCCGGA	1 cut(s)	339
AclI	AACGTT	1 cut(s)	633
AclWI	GGATC	3 cut(s)	419, 473, 990
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	227, 673
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgeI	ACCGGT	3 cut(s)	638, 674, 850
AgsI	TTSAA	4 cut(s)	185, 207, 830, 901
AjiI	CACGTC	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	52, 266
AluBI	AGCT	5 cut(s)	166, 305, 386, 489, 890
AluI	AGCT	5 cut(s)	166, 305, 386, 489, 890
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	3 cut(s)	419, 473, 990
AlwNI	CAGNNNCTG	2 cut(s)	290, 864
Ama87I	CYCGRG	1 cut(s)	695
Aor13HI	TCCGGA	1 cut(s)	339
AoxI	GGCC	1 cut(s)	608
ApaI	GGGCCC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	858, 973
AseI	ATTAAT	1 cut(s)	30
AsiGI	ACCGGT	3 cut(s)	638, 674, 850
Asp700I	GAANNNNTTC	2 cut(s)	84, 202
AspS9I	GGNCC	4 cut(s)	264, 608, 609, 667
AsuC2I	CCSGG	3 cut(s)	262, 278, 779
AsuHPI	GGTGA	1 cut(s)	971
AvaI	CYCGRG	1 cut(s)	695
AvaII	GGWCC	2 cut(s)	264, 667
BaeGI	GKGCMC	1 cut(s)	612
BanII	GRGCYC	3 cut(s)	388, 612, 779
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	2 cut(s)	365, 1029
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	870, 985
BccI	CCATC	2 cut(s)	75, 972
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	2 cut(s)	54, 268
BciVI	GTATCC	1 cut(s)	264
BcnI	CCSGG	3 cut(s)	262, 278, 779
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	1 cut(s)	870
BfmI	CTRYAG	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	2 cut(s)	859, 974
BlsI	GCNGC	2 cut(s)	860, 975
Bme1390I	CCNGG	5 cut(s)	54, 262, 268, 278, 779
Bme18I	GGWCC	2 cut(s)	264, 667
BmeT110I	CYCGRG	1 cut(s)	695
BmgBI	CACGTC	1 cut(s)	314
BmgT120I	GGNCC	4 cut(s)	264, 608, 609, 667
BmiI	GGNNCC	3 cut(s)	265, 609, 610
BmrFI	CCNGG	5 cut(s)	54, 262, 268, 278, 779
BmrI	ACTGGG	1 cut(s)	874
BmsI	GCATC	1 cut(s)	960
BmuI	ACTGGG	1 cut(s)	874
BoxI	GACNNNNGTC	1 cut(s)	555
BpiI	GAAGAC	2 cut(s)	365, 1029
BpmI	CTGGAG	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	188, 776
BpuMI	CCSGG	3 cut(s)	262, 278, 779
Bsa29I	ATCGAT	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	5 cut(s)	308, 339, 638, 674, 850
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	4 cut(s)	638, 674, 850, 879
Bse1I	ACTGG	3 cut(s)	227, 413, 869
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	54, 268
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	344, 1023
BseNI	ACTGG	3 cut(s)	227, 413, 869
BseRI	GAGGAG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	2 cut(s)	870, 985
Bsh1285I	CGRYCG	1 cut(s)	783
BshFI	GGCC	1 cut(s)	610
BshTI	ACCGGT	3 cut(s)	638, 674, 850
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	9 cut(s)	261, 277, 309, 340, 639, 675, 779, 851, 880
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	610
BsoBI	CYCGRG	1 cut(s)	695
Bsp120I	GGGCCC	1 cut(s)	608
Bsp1286I	GDGCHC	3 cut(s)	388, 612, 779
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	7 cut(s)	126, 130, 154, 411, 478, 982, 1012
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	2 cut(s)	345, 1024
BspDI	ATCGAT	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	265, 609, 610
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	3 cut(s)	419, 473, 990
BspQI	GCTCTTC	1 cut(s)	376
BsrFI	RCCGGY	4 cut(s)	638, 674, 850, 879
BsrI	ACTGG	3 cut(s)	227, 413, 869
BssAI	RCCGGY	4 cut(s)	638, 674, 850, 879
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	7 cut(s)	126, 130, 154, 411, 478, 982, 1012
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	2 cut(s)	54, 268
Bst4CI	ACNGT	3 cut(s)	286, 395, 671
Bst6I	CTCTTC	2 cut(s)	376, 594
BstC8I	GCNNGC	1 cut(s)	692
BstDEI	CTNAG	2 cut(s)	353, 1032
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	7 cut(s)	129, 133, 157, 414, 481, 985, 1015
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	7 cut(s)	126, 130, 154, 411, 478, 982, 1012
BstMCI	CGRYCG	1 cut(s)	783
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	2 cut(s)	54, 268
BstNSI	RCATGY	1 cut(s)	694
BstPAI	GACNNNNGTC	1 cut(s)	555
BstSCI	CCNGG	5 cut(s)	52, 260, 266, 276, 777
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	2 cut(s)	870, 985
BstV2I	GAAGAC	2 cut(s)	365, 1029
BstX2I	RGATCY	2 cut(s)	478, 982
BstYI	RGATCY	2 cut(s)	478, 982
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	610
BsuTUI	ATCGAT	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	991
BtrI	CACGTC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	1029
Cac8I	GCNNGC	1 cut(s)	692
CaiI	CAGNNNCTG	2 cut(s)	290, 864
Cfr10I	RCCGGY	4 cut(s)	638, 674, 850, 879
Cfr13I	GGNCC	4 cut(s)	264, 608, 609, 667
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	226, 672
CspAI	ACCGGT	3 cut(s)	638, 674, 850
CviAII	CATG	6 cut(s)	415, 419, 650, 664, 691, 739
CviQI	GTAC	2 cut(s)	226, 672
DdeI	CTNAG	2 cut(s)	353, 1032
DpnI	GATC	7 cut(s)	128, 132, 156, 413, 480, 984, 1014
DpnII	GATC	7 cut(s)	126, 130, 154, 411, 478, 982, 1012
Eam1104I	CTCTTC	2 cut(s)	376, 594
EarI	CTCTTC	2 cut(s)	376, 594
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	3 cut(s)	388, 612, 779
Eco47I	GGWCC	2 cut(s)	264, 667
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRII	CCWGG	2 cut(s)	52, 266
EcoT14I	CCWWGG	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	420
EcoT38I	GRGCYC	3 cut(s)	388, 612, 779
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	6 cut(s)	418, 422, 653, 667, 694, 742
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	6 cut(s)	414, 418, 649, 663, 690, 738
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	2 cut(s)	859, 974
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	3 cut(s)	388, 612, 779
Fsp4HI	GCNGC	2 cut(s)	859, 974
FspBI	CTAG	1 cut(s)	870
GluI	GCNGC	2 cut(s)	859, 974
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	9 cut(s)	261, 277, 309, 340, 639, 675, 779, 851, 880
Hin1II	CATG	6 cut(s)	418, 422, 653, 667, 694, 742
HincII	GTYRAC	2 cut(s)	115, 784
HindII	GTYRAC	2 cut(s)	115, 784
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	6 cut(s)	63, 198, 294, 712, 799, 1034
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	9 cut(s)	261, 277, 309, 340, 639, 675, 779, 851, 880
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	2 cut(s)	115, 784
Hpy188I	TCNGA	4 cut(s)	62, 399, 406, 772
Hpy8I	GTNNAC	2 cut(s)	115, 784
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	494, 598
HpyCH4III	ACNGT	3 cut(s)	286, 395, 671
HpyCH4IV	ACGT	2 cut(s)	313, 633
HpyCH4V	TGCA	6 cut(s)	330, 418, 690, 742, 858, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	353, 1032
HpySE526I	ACGT	2 cut(s)	313, 633
Hsp92II	CATG	6 cut(s)	418, 422, 653, 667, 694, 742
Kpn2I	TCCGGA	1 cut(s)	339
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	7 cut(s)	126, 130, 154, 411, 478, 982, 1012
LguI	GCTCTTC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	2 cut(s)	870, 985
LweI	GCATC	1 cut(s)	960
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	2 cut(s)	313, 633
MaeIII	GTNAC	3 cut(s)	314, 469, 634
MalI	GATC	7 cut(s)	128, 132, 156, 413, 480, 984, 1014
MboI	GATC	7 cut(s)	126, 130, 154, 411, 478, 982, 1012
MfeI	CAATTG	1 cut(s)	896
MflI	RGATCY	2 cut(s)	478, 982
MhlI	GDGCHC	3 cut(s)	388, 612, 779
MluCI	AATT	2 cut(s)	345, 896
MlyI	GAGTC	3 cut(s)	706, 793, 1043
MmeI	TCCRAC	2 cut(s)	281, 429
MnlI	CCTC	6 cut(s)	60, 181, 348, 399, 440, 589
Mph1103I	ATGCAT	1 cut(s)	420
MroI	TCCGGA	1 cut(s)	339
MroXI	GAANNNNTTC	2 cut(s)	84, 202
MseI	TTAA	2 cut(s)	30, 114
MslI	CAYNNNNRTG	2 cut(s)	689, 723
MspI	CCGG	9 cut(s)	261, 277, 309, 340, 639, 675, 779, 851, 880
MspR9I	CCNGG	5 cut(s)	54, 262, 268, 278, 779
MunI	CAATTG	1 cut(s)	896
MvaI	CCWGG	2 cut(s)	54, 268
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	3 cut(s)	262, 278, 779
NdeII	GATC	7 cut(s)	126, 130, 154, 411, 478, 982, 1012
NlaIII	CATG	6 cut(s)	418, 422, 653, 667, 694, 742
NlaIV	GGNNCC	3 cut(s)	265, 609, 610
NmuCI	GTSAC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	1 cut(s)	694
PaeI	GCATGC	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	376
PdmI	GAANNNNTTC	2 cut(s)	84, 202
PfeI	GAWTC	3 cut(s)	63, 198, 294
PinAI	ACCGGT	3 cut(s)	638, 674, 850
PkrI	GCNGC	2 cut(s)	860, 975
PleI	GAGTC	3 cut(s)	706, 793, 1042
PpsI	GAGTC	3 cut(s)	706, 793, 1042
PshAI	GACNNNNGTC	1 cut(s)	555
PshBI	ATTAAT	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	388
Psp1406I	AACGTT	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	52, 266
PspGI	CCWGG	2 cut(s)	52, 266
PspN4I	GGNNCC	3 cut(s)	265, 609, 610
PspOMI	GGGCCC	1 cut(s)	608
PspPI	GGNCC	4 cut(s)	264, 608, 609, 667
PsrI	GAACNNNNNNTAC	2 cut(s)	187, 219
PstI	CTGCAG	1 cut(s)	332
PstNI	CAGNNNCTG	2 cut(s)	290, 864
PsuI	RGATCY	2 cut(s)	478, 982
RsaI	GTAC	2 cut(s)	227, 673
RsaNI	GTAC	2 cut(s)	226, 672
RseI	CAYNNNNRTG	2 cut(s)	689, 723
SacI	GAGCTC	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	30, 114
SatI	GCNGC	2 cut(s)	859, 974
Sau3AI	GATC	7 cut(s)	126, 130, 154, 411, 478, 982, 1012
Sau96I	GGNCC	4 cut(s)	264, 608, 609, 667
SchI	GAGTC	3 cut(s)	706, 793, 1043
ScrFI	CCNGG	5 cut(s)	54, 262, 268, 278, 779
SduI	GDGCHC	3 cut(s)	388, 612, 779
SfaNI	GCATC	1 cut(s)	960
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	2 cut(s)	264, 667
SmiMI	CAYNNNNRTG	2 cut(s)	689, 723
SmlI	CTYRAG	2 cut(s)	167, 755
SmoI	CTYRAG	2 cut(s)	167, 755
SphI	GCATGC	1 cut(s)	694
Sse9I	AATT	2 cut(s)	345, 896
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	5 cut(s)	52, 260, 266, 276, 777
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	3 cut(s)	286, 395, 671
TaiI	ACGT	2 cut(s)	316, 636
TaqI	TCGA	6 cut(s)	26, 129, 432, 517, 783, 813
TasI	AATT	2 cut(s)	345, 896
TfiI	GAWTC	3 cut(s)	63, 198, 294
Tru1I	TTAA	2 cut(s)	30, 114
Tru9I	TTAA	2 cut(s)	30, 114
TscAI	CASTG	1 cut(s)	1036
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	858, 973
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	4 cut(s)	727, 957, 977, 1052
TspGWI	ACGGA	3 cut(s)	92, 608, 909
TspRI	CASTG	1 cut(s)	1036
VpaK11BI	GGWCC	2 cut(s)	264, 667
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	783
XmnI	GAANNNNTTC	2 cut(s)	84, 202
XspI	CTAG	1 cut(s)	870
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.