FvH4_5g10690
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
6071794 .. 6073805
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10690.t1

Sequence Viewer

Length: 1209 bp
ATGTCTGCAGAGGATCAAATGAATCTCTCTATAAATGGTCAGTCTCAGGTCCCTCCAGGCTTTCGCTTCCATCCTACGGAAGAAGAGCTTCTTCACTACTATCTGAGGAAGAAAGTTGCCTATGAGAGGATTGATCTTGACGTCATTCGAGAGGTTGATCTTAACAAGCTCGAGCCATGGGACATTCAAGAGAAGTGCAAGATAGGTTCCACTCCGCAGAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAATACCCAACTGGTACTCGAACAAATCGTGCAACTGCTGCCGGATTCTGGAAGGCCACCGGCCGTGACAAGATCATCTACAGCGGCATTCGAAGAATCGGATTGCGAAAGACGCTTGTGTTTTACAAGGGACGAGCGCCTCACGGTCAAAAGTCGGATTGGATCATGCATGAATACAGACTTGATGACAGCAGCAGCAGTCTTGATACCACAGTTTCTAATTCAATTGGGGAGTCGATGACCGAAGACGGGTGGGTGGTTTGCAGGGTCTTCAAGAAGAAGAACTACCAGAAAGCAATGGAGAGCCCTAAAGCCTCCTTCTCAATGGACTCGCAAAACAACCAAATGCTTCCGGGTTCAAGAAACGACGGCGTTCTCGATCAGATTCTATTGTACATGGGAAGAAACACTTGCAAGATCGAAAACCATGACTCACTTCATCATGAAAGGTTCATGCATCTTCCACGGCTCGAGAGCCAAACTTCTCTTCCCTCACTTCCAGTCCAGTTCGATCACAACCGTAGCTTCAAAGCTTGTTATCATGATCAGACCATTGATGACATGCTTATAGAAACCGATCAGCAGCAACAACAACAACAACCTTCTCCAACAAACCAATCCAACGACCTGGTTCATGATCATCATGATCATGATGACCCCAAAACAAGAATAGTCAATGACTGGGCGACCCTCGATCGGCTCGTGGCATCTCAACTCAATGGCCATGAAGACGAGACCTCAAAGCACTTGTCCTGCTTCGGTGACCCTAACATGGCCTTTTACTCTTCTTCTCCTTCTAACGACGGGGACTTACAGTTGTCCTATCCATACCTACGTCAAGGAAGAATATCACATAATCAACCCGAAGTCTTCAACAGTGAGAACGATCTCTGGAGCTTCACAAAATCATCGCCGTCGCCGTCATCATCAGACCCATTATGCCACCTGTCGGTATAA

Protein Analysis

403

Amino Acids

46.32

Weight (kDa)

6.01

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 145 7.5e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32770
fragaria_vesca FvH4_5g10690
malus_domestica MD06G1121400.v1.1 MD14G1137900.v1.1
prunus_persica Prupe.5G131900_v2.0.a1
pyrus_communis pycom06g11260 pycom14g11310
rosa_chinensis RchiOBHm_Chr7g0187451
rosa_laevigata RLG00000004780
rosa_multiflora Rmu_sc0001230.1_g000011
rosa_roxburghii Rroxscaffold_3G00267410
rosa_rugosa Rorug06G0481700
rosa_samantha Rh7AG086200 Rh7BG087700 Rh7CG087100 Rh7DG088700
rosa_wichuraiana Rw7G007610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AciI CCGC 2 cut(s) 215, 336
AclWI GGATC 2 cut(s) 21, 422
AcoI YGGCCR 2 cut(s) 313, 973
AcuI CTGAAG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 3 cut(s) 230, 268, 647
AfiI CCNNNNNNNGG 7 cut(s) 76, 126, 300, 501, 948, 1024, 1201
AgsI TTSAA 6 cut(s) 188, 477, 526, 612, 781, 1126
AjnI CCWGG 2 cut(s) 55, 879
AjuI GAANNNNNNNTTGG 2 cut(s) 723, 755
AluBI AGCT 5 cut(s) 88, 169, 777, 785, 1149
AluI AGCT 5 cut(s) 88, 169, 777, 785, 1149
Alw26I GTCTC 2 cut(s) 48, 980
AlwI GGATC 2 cut(s) 21, 422
Ama87I CYCGRG 2 cut(s) 170, 722
AoxI GGCC 4 cut(s) 306, 313, 973, 1026
ApeKI GCWGC 4 cut(s) 290, 444, 447, 835
ArsI GACNNNNNNTTYG 2 cut(s) 986, 1018
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 1 cut(s) 1025
AsuII TTCGAA 1 cut(s) 343
AvaI CYCGRG 2 cut(s) 170, 722
AvaII GGWCC 1 cut(s) 49
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BalI TGGCCA 1 cut(s) 975
BanII GRGCYC 1 cut(s) 560
BarI GAAGNNNNNNTAC 2 cut(s) 521, 553
BauI CACGAG 1 cut(s) 953
BbsI GAAGAC 4 cut(s) 504, 514, 987, 1114
BbvI GCAGC 4 cut(s) 277, 456, 459, 847
BccI CCATC 1 cut(s) 78
BceAI ACGGC 5 cut(s) 300, 637, 734, 1150, 1156
BciT130I CCWGG 2 cut(s) 57, 881
BclI TGATCA 3 cut(s) 796, 889, 898
BcnI CCSGG 1 cut(s) 606
BcoDI GTCTC 2 cut(s) 48, 980
BfmI CTRYAG 2 cut(s) 6, 331
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 5 cut(s) 291, 337, 445, 448, 836
BlsI GCNGC 5 cut(s) 292, 338, 446, 449, 837
Bme1390I CCNGG 3 cut(s) 57, 606, 881
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 2 cut(s) 170, 722
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 51, 208
BmrFI CCNGG 3 cut(s) 57, 606, 881
BmrI ACTGGG 1 cut(s) 943
BmsI GCATC 2 cut(s) 718, 968
BmuI ACTGGG 1 cut(s) 943
BpiI GAAGAC 4 cut(s) 504, 514, 987, 1114
BpmI CTGGAG 2 cut(s) 39, 1165
Bpu14I TTCGAA 1 cut(s) 343
BpuMI CCSGG 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 980
BsaJI CCNNGG 2 cut(s) 176, 716
Bsc4I CCNNNNNNNGG 7 cut(s) 76, 126, 300, 501, 948, 1024, 1201
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 4 cut(s) 268, 752, 757, 938
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 2 cut(s) 57, 881
BseDI CCNNGG 2 cut(s) 176, 716
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 7 cut(s) 76, 126, 300, 501, 948, 1024, 1201
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 59, 95
BseNI ACTGG 4 cut(s) 268, 752, 757, 938
BseX3I CGGCCG 1 cut(s) 313
BseXI GCAGC 4 cut(s) 277, 456, 459, 847
Bsh1285I CGRYCG 2 cut(s) 316, 949
BshFI GGCC 4 cut(s) 308, 315, 975, 1028
BsiEI CGRYCG 2 cut(s) 316, 949
BsiHKCI CYCGRG 2 cut(s) 170, 722
BsiSI CCGG 3 cut(s) 294, 312, 605
BslFI GGGAC 4 cut(s) 35, 194, 396, 1073
BslI CCNNNNNNNGG 7 cut(s) 76, 126, 300, 501, 948, 1024, 1201
BsmAI GTCTC 2 cut(s) 48, 980
BsmFI GGGAC 4 cut(s) 35, 194, 396, 1073
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 4 cut(s) 308, 315, 975, 1028
Bso31I GGTCTC 1 cut(s) 980
BsoBI CYCGRG 2 cut(s) 170, 722
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 560
Bsp1407I TGTACA 1 cut(s) 645
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 2 cut(s) 215, 336
BspANI GGCC 4 cut(s) 308, 315, 975, 1028
BspCNI CTCAG 2 cut(s) 58, 96
BspHI TCATGA 5 cut(s) 694, 793, 886, 895, 901
BspLI GGNNCC 2 cut(s) 51, 208
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 21, 422
BspQI GCTCTTC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 980
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 311
BsrGI TGTACA 1 cut(s) 645
BsrI ACTGG 4 cut(s) 268, 752, 757, 938
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 176, 716
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 953
BssT1I CCWWGG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 953
Bst2UI CCWGG 2 cut(s) 57, 881
Bst4CI ACNGT 5 cut(s) 398, 466, 773, 1068, 1130
Bst6I CTCTTC 3 cut(s) 78, 744, 1042
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 645
BstBI TTCGAA 1 cut(s) 343
BstDEI CTNAG 2 cut(s) 45, 104
BstDSI CCRYGG 2 cut(s) 176, 716
BstEII GGTNACC 1 cut(s) 1013
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstMAI GTCTC 2 cut(s) 48, 980
BstMCI CGRYCG 2 cut(s) 316, 949
BstMWI GCNNNNNNNGC 2 cut(s) 290, 364
BstNI CCWGG 2 cut(s) 57, 881
BstNSI RCATGY 1 cut(s) 817
BstPI GGTNACC 1 cut(s) 1013
BstSCI CCNGG 3 cut(s) 55, 604, 879
BstSFI CTRYAG 2 cut(s) 6, 331
BstV1I GCAGC 4 cut(s) 277, 456, 459, 847
BstV2I GAAGAC 4 cut(s) 504, 514, 987, 1114
BstXI CCANNNNNNTGG 1 cut(s) 880
BstZI CGGCCG 1 cut(s) 313
BsuRI GGCC 4 cut(s) 308, 315, 975, 1028
BtgI CCRYGG 2 cut(s) 176, 716
BtgZI GCGATG 1 cut(s) 1146
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 1135
CciI TCATGA 5 cut(s) 694, 793, 886, 895, 901
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 1 cut(s) 373
CsiI ACCWGGT 1 cut(s) 879
Csp6I GTAC 3 cut(s) 229, 267, 646
CviQI GTAC 3 cut(s) 229, 267, 646
DdeI CTNAG 2 cut(s) 45, 104
EaeI YGGCCR 2 cut(s) 313, 973
EagI CGGCCG 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 78, 744, 1042
EarI CTCTTC 3 cut(s) 78, 744, 1042
EclXI CGGCCG 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 560
Eco31I GGTCTC 1 cut(s) 980
Eco47I GGWCC 1 cut(s) 49
Eco52I CGGCCG 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 220
Eco88I CYCGRG 2 cut(s) 170, 722
Eco91I GGTNACC 1 cut(s) 1013
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 1013
EcoRII CCWGG 2 cut(s) 55, 879
EcoT14I CCWWGG 1 cut(s) 176
EcoT22I ATGCAT 2 cut(s) 423, 711
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 176
FalI AAGNNNNNCTT 6 cut(s) 72, 104, 75, 107, 646, 678
FaqI GGGAC 4 cut(s) 35, 194, 396, 1073
FbaI TGATCA 3 cut(s) 796, 889, 898
Fnu4HI GCNGC 5 cut(s) 291, 337, 445, 448, 836
FokI GGATG 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 5 cut(s) 291, 337, 445, 448, 836
GlaI GCGC 1 cut(s) 390
GluI GCNGC 5 cut(s) 291, 337, 445, 448, 836
GsuI CTGGAG 2 cut(s) 39, 1165
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 4 cut(s) 308, 315, 975, 1028
HapII CCGG 3 cut(s) 294, 312, 605
HgaI GACGC 1 cut(s) 373
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 7 cut(s) 22, 297, 348, 485, 581, 637, 683
HpaII CCGG 3 cut(s) 294, 312, 605
HphI GGTGA 1 cut(s) 1025
Hpy188I TCNGA 6 cut(s) 105, 353, 409, 636, 801, 1183
Hpy99I CGWCG 3 cut(s) 623, 1058, 1171
HpyAV CCTTC 4 cut(s) 298, 580, 864, 1056
HpyCH4III ACNGT 5 cut(s) 398, 466, 773, 1068, 1130
HpyCH4IV ACGT 2 cut(s) 141, 1087
HpyCH4V TGCA 7 cut(s) 8, 198, 284, 421, 516, 666, 709
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 364
HpyF3I CTNAG 2 cut(s) 45, 104
HpySE526I ACGT 2 cut(s) 141, 1087
Hsp92I GRCGYC 1 cut(s) 141
HspAI GCGC 1 cut(s) 389
Ksp22I TGATCA 3 cut(s) 796, 889, 898
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 1146
Lsp1109I GCAGC 4 cut(s) 277, 456, 459, 847
LweI GCATC 2 cut(s) 718, 968
MabI ACCWGGT 1 cut(s) 879
MaeII ACGT 2 cut(s) 141, 1087
MaeIII GTNAC 2 cut(s) 317, 1013
MfeI CAATTG 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 560
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 2 cut(s) 472, 477
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 3 cut(s) 494, 575, 677
MmeI TCCRAC 3 cut(s) 387, 884, 897
Mox20I TGGCCA 1 cut(s) 975
Mph1103I ATGCAT 2 cut(s) 423, 711
MroXI GAANNNNTTC 1 cut(s) 87
MscI TGGCCA 1 cut(s) 975
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 1 cut(s) 975
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 3 cut(s) 294, 312, 605
MspR9I CCNGG 3 cut(s) 57, 606, 881
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 2 cut(s) 57, 881
MwoI GCNNNNNNNGC 2 cut(s) 290, 364
NciI CCSGG 1 cut(s) 606
NcoI CCATGG 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 51, 208
NmuCI GTSAC 2 cut(s) 317, 1013
NsiI ATGCAT 2 cut(s) 423, 711
NspI RCATGY 1 cut(s) 817
NspV TTCGAA 1 cut(s) 343
PaeR7I CTCGAG 2 cut(s) 170, 722
PagI TCATGA 5 cut(s) 694, 793, 886, 895, 901
PciSI GCTCTTC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 4 cut(s) 277, 627, 951, 1169
PctI GAATGC 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 4 cut(s) 22, 297, 348, 637
PkrI GCNGC 5 cut(s) 292, 338, 446, 449, 837
Ple19I CGATCG 1 cut(s) 949
PleI GAGTC 3 cut(s) 493, 575, 677
PpsI GAGTC 3 cut(s) 493, 575, 677
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 55, 879
PspEI GGTNACC 1 cut(s) 1013
PspGI CCWGG 2 cut(s) 55, 879
PspN4I GGNNCC 2 cut(s) 51, 208
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PspXI VCTCGAGB 1 cut(s) 170
PsrI GAACNNNNNNTAC 2 cut(s) 212, 244
PstI CTGCAG 1 cut(s) 10
PvuI CGATCG 1 cut(s) 949
RsaI GTAC 3 cut(s) 230, 268, 647
RsaNI GTAC 3 cut(s) 229, 267, 646
RseI CAYNNNNRTG 1 cut(s) 900
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 5 cut(s) 291, 337, 445, 448, 836
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 3 cut(s) 494, 575, 677
ScrFI CCNGG 3 cut(s) 57, 606, 881
SduI GDGCHC 1 cut(s) 560
SexAI ACCWGGT 1 cut(s) 879
SfaNI GCATC 2 cut(s) 718, 968
SfcI CTRYAG 2 cut(s) 6, 331
Sfr274I CTCGAG 2 cut(s) 170, 722
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 1 cut(s) 49
SlaI CTCGAG 2 cut(s) 170, 722
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 2 cut(s) 170, 722
SmoI CTYRAG 2 cut(s) 170, 722
Sse9I AATT 2 cut(s) 472, 477
SsiI CCGC 2 cut(s) 215, 336
StyD4I CCNGG 3 cut(s) 55, 604, 879
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 5 cut(s) 398, 466, 773, 1068, 1130
TaiI ACGT 2 cut(s) 144, 1090
TaqII GACCGA 1 cut(s) 509
TasI AATT 2 cut(s) 472, 477
TatI WGTACW 1 cut(s) 645
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 4 cut(s) 22, 297, 348, 637
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 1135
TseFI GTSAC 2 cut(s) 317, 1013
TseI GCWGC 4 cut(s) 290, 444, 447, 835
Tsp45I GTSAC 2 cut(s) 317, 1013
TspDTI ATGAA 7 cut(s) 35, 438, 680, 694, 711, 875, 993
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 1135
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 124
XceI RCATGY 1 cut(s) 817
XhoI CTCGAG 2 cut(s) 170, 722
XmnI GAANNNNTTC 1 cut(s) 87
ZraI GACGTC 1 cut(s) 142
Zsp2I ATGCAT 2 cut(s) 423, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.