Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014479

Physical Location & Seq

Genomic Coordinates Reverse (-)

60285349 .. 60287991

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0481700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGAAGAAGGCATTGAAATCCGTGCTTCTGGTAACGCTTATGGTTCTGGTTATCACTCACAACTGTGAGGTGGTAGCAGAAGAGAGTGAGCATGTGAAAAAGACGTACATCATTCACATGGACAAGTCCCAAATGCCCGCGAGTTTCGACGACGACCATGTCAACTGGTACGGCTCGTCGTTGAAAGCGGTCTCCGATTCAGCTGACATGCTTTACACGTACAAGACTGTCATCCATGGCTACTCAACAAGGCTAACTGCCGAGGAAGCTGAGCAGCTCGAAAAGCAGCCAGGAATTCTCTCTGTCCTGCCGGAAAGGAGGTACGAGCTTCACACAACTAGGACTCCGGAGTTTCTCGGACTAGGCAAAAGCGAAGCTGTGTTACCGGCTTCGGATAAGATGGGTGAGGTGATCATCGGAGTAGTGGACACCGGCGTGTGGCCGGAGCTCAAAAGCTACGACGACACTGGTCTTGGACCAGTGCCGAGTGGCTGGAAAGGGTCGTGCCAGCAGGGAAAGACATTCAACTCTTCGAGCTGCAACAAAAAGCTGATTGGTGCTGCGTTTTTCTCAAACGGGTACGAAGCAGCGTTTGGACCTGTTGATGAAAACGTAGAATCAAAGTCACCGAGAGATGACGATGGCCATGGAACTCACACCTCAACAACTGCGGCGGGGTCTGTTGTTACAGGAGCTAGCTTCCTTGGTTACGCTCCAGGGACAGCTAGGGGTATGGCGCCGCAAGCTCGAGTGGCCACATACAAGGCTTGCTGGCTTGGAGGGTGTTTCGGTTCTGATATCATAGCTGCAATGGAGAAGGCGGTTGAGGATGGGGTTGATGTTTTGTCTTTGTCTATTGGTGGATCGCAGTCTGATTATTATAGAGACACGGTTGCCATTGGAGCTTTTGCTGCCGCGGCGCAGGGTATTCTAGTATCGTGTTCGGCTGGAAATGGTGGACCGGAAGCGGGAAGCTTGTCCAACGTTGCGCCTTGGATAACTACTGTGGGCGCTGGAACATTGGACAGGGACTTCCCGGCTTATGTCAGCCTTGGAAATGCAAAGAAATTTAGAGGTATATCTCTATACAGGGGAACGGCCTTGTCTAGTGGATTGATTCCACTTGTTGATGCTCGCAATGCGAGCAGTTCGAGTGGTGATCTGTGCAGTCCCGACAGTCTGATTCCGGCAAAGGTTGCCGGGAAGATTGTGGTATGTGACCGAGGGGGAACTCCGAGGGTTCAAAAGAGTCTGGTGGTGAAAAAGGCTGGTGGTGTGGGAATGATTTTGACCAACACCGAAACATATGGTGAAGAGCTTGTTGCTGATGCATATTTCTTGCCTACAGCAGCAGTTGGCCAGAAAGCTGGTGACGCAATAAAGAGCTATATTGCATCCGATTCTAATCCAACAGCAACAATTTCTCTTGGAGAAACGGAGTTAGGCGTCCAACCTTCACCGGTGGTGGCTGCGTTTAGCTCTAGAGGACCAAATTTTGTCACTCCAGAAGTACTCAAACCAGACCTGATAGCACCAGGAATGAACATCCTAGCTGGGTGGACGGGCGCAGTTGGACCAACTGGACTTCCTGAAGACAAGAGGAGGGTGGGCTTCAACATCATTTCAGGTACATCCATGTCATGTCCACACGTGAGTGGGCTCGCGGCCCTTGTCAAGGCGGCTCACCCAGACTGGAGCCCTGCGGCCATTAAGTCTGCCCTCATGACCACAGCCTATTCTAACTACAAAACTGGAGAAACAATCGAAGATGTTTCTACTGGAAGTGCTGCAACACCTTTCGATTATGGGGCTGGGCATGTGGATCCAGTGGCAGCTCTTGACCCTGGCCTTGTCTACGATCTTGCTGTTGAGGACTACCTAAGTTTCCTCTGTGCCTTGAATTATTCCGCTTCTCAGATCAAGCAAACCACTAAGAAGGACTTCACCTGTGATTCAAGCAAGAAATACAGCCTCGGAGATTTGAATTACCCGTCCTTCTCTCTTGCTCTAGATACATCTTCAGGCCAAGGGGGTGGTACTGGTGCATCAACCACTTTAAAGTACACAAGGACTCTGACCAATGTGGGTGCCCCGGCAACATACAAGGTCTCAATGTCTTCACTGACCAGATCAGTGAAGATGTCCGTAGAACCAGAATCACTGAGCTTCAGTGATGCGTATGAGAAGAAGACATACACTGTGACTTTTGTTGCTAGCTCTTTGCCATCCGGTACAGCCAGCTTTGGTCGCTTGGAATGGTCTGATGGGAAACACATAGTAGGTAGTCCTATTGCTTACACCTGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

769

Amino Acids

80.57

Weight (kDa)

5.52

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	35 - 111	3e-19	Peptidase inhibitor I9
Peptidase_S8	PF00082	136 - 605	5.7e-46	Subtilase family
PA	PF02225	374 - 460	7.2e-14	PA domain
fn3_6	PF17766	660 - 765	1.8e-24	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32770
fragaria_vesca	FvH4_5g10690
malus_domestica	MD06G1121400.v1.1 MD14G1137900.v1.1
prunus_persica	Prupe.5G131900_v2.0.a1
pyrus_communis	pycom06g11260 pycom14g11310
rosa_chinensis	RchiOBHm_Chr7g0187451
rosa_laevigata	RLG00000004780
rosa_multiflora	Rmu_sc0001230.1_g000011
rosa_roxburghii	Rroxscaffold_3G00267410
rosa_rugosa	Rorug06G0481700
rosa_samantha	Rh7AG086200 Rh7BG087700 Rh7CG087100 Rh7DG088700
rosa_wichuraiana	Rw7G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccB1I	GGYRCC	2 cut(s)	736, 2087
AccI	GTMKAC	1 cut(s)	1854
AccII	CGCG	3 cut(s)	140, 917, 1664
AccIII	TCCGGA	1 cut(s)	346
AclI	AACGTT	1 cut(s)	984
AclWI	GGATC	3 cut(s)	871, 1817, 1830
AcoI	YGGCCR	5 cut(s)	440, 643, 753, 1357, 1704
AcsI	RAATTY	3 cut(s)	294, 1067, 1492
AcuI	CTGAAG	3 cut(s)	1611, 2004, 2152
AcvI	CACGTG	1 cut(s)	1651
AcyI	GRCGYC	2 cut(s)	737, 1446
AfiI	CCNNNNNNNGG	3 cut(s)	438, 968, 1675
AflIII	ACRYGT	2 cut(s)	216, 1648
AgeI	ACCGGT	1 cut(s)	1459
AgsI	TTSAA	8 cut(s)	16, 184, 526, 1244, 1615, 1900, 1956, 1984
AjnI	CCWGG	5 cut(s)	289, 715, 1534, 1843, 2300
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AleI	CACNNNNGTG	3 cut(s)	63, 434, 1653
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	3 cut(s)	196, 879, 2113
AlwI	GGATC	3 cut(s)	871, 1817, 1830
Ama87I	CYCGRG	1 cut(s)	747
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	9 cut(s)	440, 643, 753, 1098, 1357, 1665, 1704, 1846, 2023
ApoI	RAATTY	3 cut(s)	294, 1067, 1492
AsiGI	ACCGGT	1 cut(s)	1459
Asp700I	GAANNNNTTC	1 cut(s)	1940
AspLEI	GCGC	5 cut(s)	739, 922, 991, 1013, 1568
AspS9I	GGNCC	6 cut(s)	476, 596, 959, 1487, 1574, 1666
AsuC2I	CCSGG	3 cut(s)	1037, 1201, 2093
AsuNHI	GCTAGC	2 cut(s)	695, 2213
AvaI	CYCGRG	1 cut(s)	747
AvaII	GGWCC	5 cut(s)	476, 596, 959, 1487, 1574
BaeGI	GKGCMC	1 cut(s)	2092
BalI	TGGCCA	3 cut(s)	645, 755, 1359
BamHI	GGATCC	1 cut(s)	1822
BanI	GGYRCC	2 cut(s)	736, 2087
BanII	GRGCYC	3 cut(s)	450, 1662, 1700
BarI	GAAGNNNNNNTAC	4 cut(s)	366, 398, 2177, 2209
BbrPI	CACGTG	1 cut(s)	1651
BbsI	GAAGAC	3 cut(s)	1599, 2109, 2195
Bbv12I	GWGCWC	1 cut(s)	450
BccI	CCATC	5 cut(s)	394, 635, 824, 2233, 2258
BceAI	ACGGC	2 cut(s)	187, 1113
BciT130I	CCWGG	5 cut(s)	291, 717, 1536, 1845, 2302
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	3 cut(s)	1037, 1201, 2093
BcoDI	GTCTC	3 cut(s)	196, 879, 2113
BfmI	CTRYAG	1 cut(s)	1344
BfoI	RGCGCY	2 cut(s)	740, 1014
BlpI	GCTNAGC	1 cut(s)	270
BmcAI	AGTACT	1 cut(s)	1512
Bme1390I	CCNGG	8 cut(s)	291, 717, 1037, 1201, 1536, 1845, 2093, 2302
Bme18I	GGWCC	5 cut(s)	476, 596, 959, 1487, 1574
BmeT110I	CYCGRG	1 cut(s)	747
BmgT120I	GGNCC	6 cut(s)	476, 596, 959, 1487, 1574, 1666
BmiI	GGNNCC	4 cut(s)	738, 1697, 1824, 2089
BmrFI	CCNGG	8 cut(s)	291, 717, 1037, 1201, 1536, 1845, 2093, 2302
BmsI	GCATC	5 cut(s)	1120, 1318, 1403, 2054, 2164
BmtI	GCTAGC	2 cut(s)	699, 2217
BoxI	GACNNNNGTC	1 cut(s)	468
BpiI	GAAGAC	3 cut(s)	1599, 2109, 2195
BpmI	CTGGAG	4 cut(s)	699, 1488, 1714, 1773
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuMI	CCSGG	3 cut(s)	1037, 1201, 2093
BsaAI	YACGTR	2 cut(s)	219, 1651
BsaBI	GATNNNNATC	1 cut(s)	1404
BsaHI	GRCGYC	2 cut(s)	737, 1446
BsaI	GGTCTC	2 cut(s)	196, 2113
BsaWI	WCCGGW	4 cut(s)	346, 961, 1459, 2228
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 968, 1675
Bse118I	RCCGGY	3 cut(s)	385, 431, 1459
Bse1I	ACTGG	9 cut(s)	170, 472, 479, 1585, 1697, 1756, 1783, 1826, 2044
Bse3DI	GCAATG	2 cut(s)	816, 1144
Bse8I	GATNNNNATC	1 cut(s)	1404
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	5 cut(s)	291, 717, 1536, 1845, 2302
BseGI	GGATG	6 cut(s)	231, 835, 1394, 1545, 1631, 2225
BseJI	GATNNNNATC	1 cut(s)	1404
BseLI	CCNNNNNNNGG	3 cut(s)	438, 968, 1675
BseMI	GCAATG	2 cut(s)	816, 1144
BseMII	CTCAG	3 cut(s)	261, 1928, 2153
BseNI	ACTGG	9 cut(s)	170, 472, 479, 1585, 1697, 1756, 1783, 1826, 2044
BseRI	GAGGAG	1 cut(s)	1615
BseSI	GKGCMC	1 cut(s)	2092
BseYI	CCCAGC	2 cut(s)	1553, 1811
BsgI	GTGCAG	1 cut(s)	1186
Bsh1236I	CGCG	3 cut(s)	140, 917, 1664
BshFI	GGCC	9 cut(s)	442, 645, 755, 1100, 1359, 1667, 1706, 1848, 2025
BshNI	GGYRCC	2 cut(s)	736, 2087
BshTI	ACCGGT	1 cut(s)	1459
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	747
BslFI	GGGAC	4 cut(s)	112, 733, 1043, 1155
BslI	CCNNNNNNNGG	3 cut(s)	438, 968, 1675
BsmAI	GTCTC	3 cut(s)	196, 879, 2113
BsmFI	GGGAC	4 cut(s)	112, 733, 1043, 1155
BsnI	GGCC	9 cut(s)	442, 645, 755, 1100, 1359, 1667, 1706, 1848, 2025
Bso31I	GGTCTC	2 cut(s)	196, 2113
BsoBI	CYCGRG	1 cut(s)	747
Bsp1286I	GDGCHC	4 cut(s)	450, 1662, 1700, 2092
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	7 cut(s)	411, 863, 1159, 1822, 1858, 1917, 2129
Bsp1720I	GCTNAGC	1 cut(s)	270
Bsp19I	CCATGG	2 cut(s)	235, 646
BspANI	GGCC	9 cut(s)	442, 645, 755, 1100, 1359, 1667, 1706, 1848, 2025
BspCNI	CTCAG	3 cut(s)	262, 1927, 2154
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	3 cut(s)	140, 917, 1664
BspHI	TCATGA	1 cut(s)	1722
BspLI	GGNNCC	4 cut(s)	738, 1697, 1824, 2089
BspOI	GCTAGC	2 cut(s)	699, 2217
BspPI	GGATC	3 cut(s)	871, 1817, 1830
BspQI	GCTCTTC	1 cut(s)	1308
BspT107I	GGYRCC	2 cut(s)	736, 2087
BspTNI	GGTCTC	2 cut(s)	196, 2113
BsrDI	GCAATG	2 cut(s)	816, 1144
BsrFI	RCCGGY	3 cut(s)	385, 431, 1459
BsrI	ACTGG	9 cut(s)	170, 472, 479, 1585, 1697, 1756, 1783, 1826, 2044
BssAI	RCCGGY	3 cut(s)	385, 431, 1459
BssMI	GATC	7 cut(s)	411, 863, 1159, 1822, 1858, 1917, 2129
BssNI	GRCGYC	2 cut(s)	737, 1446
BssT1I	CCWWGG	6 cut(s)	235, 646, 703, 992, 1051, 2026
Bst2UI	CCWGG	5 cut(s)	291, 717, 1536, 1845, 2302
Bst4CI	ACNGT	6 cut(s)	65, 229, 892, 1006, 1178, 2200
Bst6I	CTCTTC	3 cut(s)	75, 535, 1308
BstACI	GRCGYC	2 cut(s)	737, 1446
BstAPI	GCANNNNNTGC	1 cut(s)	1196
BstBAI	YACGTR	2 cut(s)	219, 1651
BstDEI	CTNAG	5 cut(s)	270, 1880, 1914, 1932, 2162
BstDSI	CCRYGG	3 cut(s)	235, 646, 915
BstENI	CCTNNNNNAGG	1 cut(s)	1673
BstF5I	GGATG	6 cut(s)	231, 835, 1394, 1545, 1631, 2225
BstFNI	CGCG	3 cut(s)	140, 917, 1664
BstH2I	RGCGCY	2 cut(s)	740, 1014
BstHHI	GCGC	5 cut(s)	739, 922, 991, 1013, 1568
BstKTI	GATC	7 cut(s)	414, 866, 1162, 1825, 1861, 1920, 2132
BstMAI	GTCTC	3 cut(s)	196, 879, 2113
BstMBI	GATC	7 cut(s)	411, 863, 1159, 1822, 1858, 1917, 2129
BstNI	CCWGG	5 cut(s)	291, 717, 1536, 1845, 2302
BstNSI	RCATGY	3 cut(s)	95, 211, 1820
BstPAI	GACNNNNGTC	1 cut(s)	468
BstSCI	CCNGG	8 cut(s)	289, 715, 1035, 1199, 1534, 1843, 2091, 2300
BstSFI	CTRYAG	1 cut(s)	1344
BstSLI	GKGCMC	1 cut(s)	2092
BstUI	CGCG	3 cut(s)	140, 917, 1664
BstV2I	GAAGAC	3 cut(s)	1599, 2109, 2195
BstX2I	RGATCY	1 cut(s)	1822
BstXI	CCANNNNNNTGG	2 cut(s)	1367, 2033
BstYI	RGATCY	1 cut(s)	1822
BsuRI	GGCC	9 cut(s)	442, 645, 755, 1100, 1359, 1667, 1706, 1848, 2025
BtgI	CCRYGG	3 cut(s)	235, 646, 915
BtsCI	GGATG	6 cut(s)	231, 835, 1394, 1545, 1631, 2225
BtsIMutI	CAGTG	8 cut(s)	465, 486, 1833, 2120, 2139, 2159, 2176, 2196
CciI	TCATGA	1 cut(s)	1722
CfoI	GCGC	5 cut(s)	739, 922, 991, 1013, 1568
Cfr10I	RCCGGY	3 cut(s)	385, 431, 1459
Cfr13I	GGNCC	6 cut(s)	476, 596, 959, 1487, 1574, 1666
Cfr42I	CCGCGG	1 cut(s)	918
CseI	GACGC	2 cut(s)	1382, 1435
CspAI	ACCGGT	1 cut(s)	1459
DdeI	CTNAG	5 cut(s)	270, 1880, 1914, 1932, 2162
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	7 cut(s)	413, 865, 1161, 1824, 1860, 1919, 2131
DpnII	GATC	7 cut(s)	411, 863, 1159, 1822, 1858, 1917, 2129
DraI	TTTAAA	1 cut(s)	2058
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	5 cut(s)	440, 643, 753, 1357, 1704
Eam1104I	CTCTTC	3 cut(s)	75, 535, 1308
EarI	CTCTTC	3 cut(s)	75, 535, 1308
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	6 cut(s)	235, 646, 703, 992, 1051, 2026
Eco24I	GRGCYC	3 cut(s)	450, 1662, 1700
Eco31I	GGTCTC	2 cut(s)	196, 2113
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	5 cut(s)	476, 596, 959, 1487, 1574
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	3 cut(s)	1611, 2004, 2152
Eco72I	CACGTG	1 cut(s)	1651
Eco88I	CYCGRG	1 cut(s)	747
EcoICRI	GAGCTC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	1673
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	5 cut(s)	289, 715, 1534, 1843, 2300
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	6 cut(s)	235, 646, 703, 992, 1051, 2026
EcoT22I	ATGCAT	1 cut(s)	1333
EcoT38I	GRGCYC	3 cut(s)	450, 1662, 1700
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
ErhI	CCWWGG	6 cut(s)	235, 646, 703, 992, 1051, 2026
FalI	AAGNNNNNCTT	2 cut(s)	1925, 1957
FaqI	GGGAC	4 cut(s)	112, 733, 1043, 1155
FauI	CCCGC	3 cut(s)	145, 667, 961
FauNDI	CATATG	1 cut(s)	1306
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	1854
FokI	GGATG	6 cut(s)	218, 842, 1381, 1532, 1618, 2212
FriOI	GRGCYC	3 cut(s)	450, 1662, 1700
GlaI	GCGC	5 cut(s)	738, 921, 990, 1012, 1567
GsaI	CCCAGC	2 cut(s)	1557, 1815
GsuI	CTGGAG	4 cut(s)	699, 1488, 1714, 1773
HaeII	RGCGCY	2 cut(s)	740, 1014
HaeIII	GGCC	9 cut(s)	442, 645, 755, 1100, 1359, 1667, 1706, 1848, 2025
HgaI	GACGC	2 cut(s)	1382, 1435
HhaI	GCGC	5 cut(s)	739, 922, 991, 1013, 1568
Hin1I	GRCGYC	2 cut(s)	737, 1446
Hin6I	GCGC	5 cut(s)	737, 920, 989, 1011, 1566
HinP1I	GCGC	5 cut(s)	737, 920, 989, 1011, 1566
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	973
Hpy166II	GTNNAC	7 cut(s)	163, 427, 959, 1560, 1646, 1855, 2064
Hpy188III	TCNNGA	8 cut(s)	347, 1172, 1482, 1505, 1589, 1723, 1838, 2009
Hpy8I	GTNNAC	7 cut(s)	163, 427, 959, 1560, 1646, 1855, 2064
Hpy99I	CGWCG	4 cut(s)	152, 155, 181, 464
HpyAV	CCTTC	4 cut(s)	811, 1464, 1930, 2005
HpyCH4III	ACNGT	6 cut(s)	65, 229, 892, 1006, 1178, 2200
HpyCH4IV	ACGT	5 cut(s)	104, 218, 612, 984, 1650
HpyCH4V	TGCA	8 cut(s)	540, 809, 1061, 1167, 1331, 1394, 1790, 2045
HpyF3I	CTNAG	5 cut(s)	270, 1880, 1914, 1932, 2162
HpySE526I	ACGT	5 cut(s)	104, 218, 612, 984, 1650
Hsp92I	GRCGYC	2 cut(s)	737, 1446
HspAI	GCGC	5 cut(s)	737, 920, 989, 1011, 1566
KasI	GGCGCC	1 cut(s)	736
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	411
KspI	CCGCGG	1 cut(s)	918
Kzo9I	GATC	7 cut(s)	411, 863, 1159, 1822, 1858, 1917, 2129
LguI	GCTCTTC	1 cut(s)	1308
LmnI	GCTCC	5 cut(s)	445, 692, 718, 902, 1695
LweI	GCATC	5 cut(s)	1120, 1318, 1403, 2054, 2164
MaeII	ACGT	5 cut(s)	104, 218, 612, 984, 1650
MaeIII	GTNAC	9 cut(s)	31, 381, 624, 685, 707, 1217, 1370, 1498, 2200
MalI	GATC	7 cut(s)	413, 865, 1161, 1824, 1860, 1919, 2131
MboI	GATC	7 cut(s)	411, 863, 1159, 1822, 1858, 1917, 2129
MflI	RGATCY	1 cut(s)	1822
MhlI	GDGCHC	4 cut(s)	450, 1662, 1700, 2092
MlsI	TGGCCA	3 cut(s)	645, 755, 1359
MluCI	AATT	6 cut(s)	294, 1067, 1419, 1492, 1900, 1984
MluNI	TGGCCA	3 cut(s)	645, 755, 1359
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	3 cut(s)	337, 1258, 2065
MmeI	TCCRAC	4 cut(s)	1005, 1433, 1474, 1552
Mox20I	TGGCCA	3 cut(s)	645, 755, 1359
Mph1103I	ATGCAT	1 cut(s)	1333
MroI	TCCGGA	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	1940
MscI	TGGCCA	3 cut(s)	645, 755, 1359
MseI	TTAA	2 cut(s)	1710, 2057
MslI	CAYNNNNRTG	4 cut(s)	63, 116, 434, 1653
Msp20I	TGGCCA	3 cut(s)	645, 755, 1359
MspA1I	CMGCKG	2 cut(s)	203, 917
MspR9I	CCNGG	8 cut(s)	291, 717, 1037, 1201, 1536, 1845, 2093, 2302
MvaI	CCWGG	5 cut(s)	291, 717, 1536, 1845, 2302
MvnI	CGCG	3 cut(s)	140, 917, 1664
NarI	GGCGCC	1 cut(s)	737
NciI	CCSGG	3 cut(s)	1037, 1201, 2093
NcoI	CCATGG	2 cut(s)	235, 646
NdeI	CATATG	1 cut(s)	1306
NdeII	GATC	7 cut(s)	411, 863, 1159, 1822, 1858, 1917, 2129
NheI	GCTAGC	2 cut(s)	695, 2213
NlaIV	GGNNCC	4 cut(s)	738, 1697, 1824, 2089
NmeAIII	GCCGAG	2 cut(s)	286, 510
NmuCI	GTSAC	5 cut(s)	624, 1217, 1370, 1498, 2200
NsiI	ATGCAT	1 cut(s)	1333
NspI	RCATGY	3 cut(s)	95, 211, 1820
OliI	CACNNNNGTG	3 cut(s)	63, 434, 1653
PaeR7I	CTCGAG	1 cut(s)	747
PagI	TCATGA	1 cut(s)	1722
PciSI	GCTCTTC	1 cut(s)	1308
PdmI	GAANNNNTTC	1 cut(s)	1940
PfeI	GAWTC	7 cut(s)	197, 617, 1117, 1183, 1400, 1952, 2156
PflFI	GACNNNGTC	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	1459
PleI	GAGTC	3 cut(s)	337, 1257, 2065
PluTI	GGCGCC	1 cut(s)	740
PmaCI	CACGTG	1 cut(s)	1651
PmlI	CACGTG	1 cut(s)	1651
PpsI	GAGTC	3 cut(s)	337, 1257, 2065
Ppu21I	YACGTR	2 cut(s)	219, 1651
PshAI	GACNNNNGTC	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	450
Psp1406I	AACGTT	1 cut(s)	984
Psp6I	CCWGG	5 cut(s)	289, 715, 1534, 1843, 2300
PspCI	CACGTG	1 cut(s)	1651
PspFI	CCCAGC	2 cut(s)	1553, 1811
PspGI	CCWGG	5 cut(s)	289, 715, 1534, 1843, 2300
PspN4I	GGNNCC	4 cut(s)	738, 1697, 1824, 2089
PspPI	GGNCC	6 cut(s)	476, 596, 959, 1487, 1574, 1666
PspXI	VCTCGAGB	1 cut(s)	747
PsuI	RGATCY	1 cut(s)	1822
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	203
RseI	CAYNNNNRTG	4 cut(s)	63, 116, 434, 1653
SacI	GAGCTC	1 cut(s)	450
SacII	CCGCGG	1 cut(s)	918
SapI	GCTCTTC	1 cut(s)	1308
SaqAI	TTAA	2 cut(s)	1710, 2057
Sau3AI	GATC	7 cut(s)	411, 863, 1159, 1822, 1858, 1917, 2129
Sau96I	GGNCC	6 cut(s)	476, 596, 959, 1487, 1574, 1666
ScaI	AGTACT	1 cut(s)	1512
SchI	GAGTC	3 cut(s)	337, 1258, 2065
ScrFI	CCNGG	8 cut(s)	291, 717, 1037, 1201, 1536, 1845, 2093, 2302
SduI	GDGCHC	4 cut(s)	450, 1662, 1700, 2092
SfaNI	GCATC	5 cut(s)	1120, 1318, 1403, 2054, 2164
SfcI	CTRYAG	1 cut(s)	1344
SfoI	GGCGCC	1 cut(s)	738
Sfr274I	CTCGAG	1 cut(s)	747
Sfr303I	CCGCGG	1 cut(s)	918
SgrAI	CRCCGGYG	2 cut(s)	431, 1459
SgrBI	CCGCGG	1 cut(s)	918
SinI	GGWCC	5 cut(s)	476, 596, 959, 1487, 1574
SlaI	CTCGAG	1 cut(s)	747
SmiMI	CAYNNNNRTG	4 cut(s)	63, 116, 434, 1653
SmlI	CTYRAG	1 cut(s)	747
SmoI	CTYRAG	1 cut(s)	747
Sse9I	AATT	6 cut(s)	294, 1067, 1419, 1492, 1900, 1984
SspDI	GGCGCC	1 cut(s)	736
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	8 cut(s)	289, 715, 1035, 1199, 1534, 1843, 2091, 2300
StyI	CCWWGG	6 cut(s)	235, 646, 703, 992, 1051, 2026
TaaI	ACNGT	6 cut(s)	65, 229, 892, 1006, 1178, 2200
TaiI	ACGT	5 cut(s)	107, 221, 615, 987, 1653
TaqI	TCGA	7 cut(s)	147, 279, 533, 748, 1151, 1764, 1800
TaqII	GACCGA	1 cut(s)	1236
TasI	AATT	6 cut(s)	294, 1067, 1419, 1492, 1900, 1984
TatI	WGTACW	2 cut(s)	1510, 2061
TauI	GCSGC	7 cut(s)	674, 742, 917, 920, 1667, 1682, 1706
TfiI	GAWTC	7 cut(s)	197, 617, 1117, 1183, 1400, 1952, 2156
Tru1I	TTAA	2 cut(s)	1710, 2057
Tru9I	TTAA	2 cut(s)	1710, 2057
TscAI	CASTG	8 cut(s)	472, 486, 1833, 2127, 2139, 2166, 2176, 2203
TseFI	GTSAC	5 cut(s)	624, 1217, 1370, 1498, 2200
Tsp45I	GTSAC	5 cut(s)	624, 1217, 1370, 1498, 2200
TspDTI	ATGAA	3 cut(s)	17, 621, 1556
TspGWI	ACGGA	3 cut(s)	10, 1451, 2134
TspRI	CASTG	8 cut(s)	472, 486, 1833, 2127, 2139, 2166, 2176, 2203
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	5 cut(s)	476, 596, 959, 1487, 1574
XagI	CCTNNNNNAGG	1 cut(s)	1673
XapI	RAATTY	3 cut(s)	294, 1067, 1492
XbaI	TCTAGA	2 cut(s)	1481, 2008
XceI	RCATGY	3 cut(s)	95, 211, 1820
XhoI	CTCGAG	1 cut(s)	747
XmiI	GTMKAC	1 cut(s)	1854
XmnI	GAANNNNTTC	1 cut(s)	1940
ZrmI	AGTACT	1 cut(s)	1512
Zsp2I	ATGCAT	1 cut(s)	1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.