MD14G1137900.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014479
Physical Location & Seq
Reverse (-)
22516958 .. 22518874
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1137900.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGTCTGATGATCATATGAGTCTATCAATAAATGGTCAATCTCAAGTTCCTCCAGGTTTCCGATTCCATCCAACCGAAGAGGAGCTTCTTCACTACTATCTTAGGAAGAAAGTTGCCTTTGAGAGGATTGATCTTGATGTAATTCGAGAAGTTGATCTTAATAAGCTTGAGCCATGGGACATTCAAGAGAAGTGCAAAATAGGTTCCACTCCACAAAATGATTGGTACTTCTTCAGTCATAAGGACAAGAAATACCCAACCGGAACTCGAACCAATCGGGCAACGACTGCCGGGTTTTGGAAGGCCACCGGGCGGGACAAGATCATCTATAGCGGCTTCAAAAGAATTGGATTGAGAAAGACACTTGTGTTTTATAAGGGTCGAGCTCCTCATGGACAAAAGTCAGATTGGATCATGCATGAATATAGGCTTGAGGAAAGCAACAGCACTCATGACACCACCGTTTCTAGCTCAATGGGGGAGTCGATGACCGAAGAGGGGTGGGTGGTTTGCCGAGTATTCAAGAAGAAGAACTATCAGAAAGCCTTAGAGAGCCCTAAAGCCTCATTCTCCATGGACTCATCAAACAACCAAATACATGGTTCAAGAAACGATGGTGTTCTTGATCAAATACTAATGTACATGGGAAGAACTTGCAAGCTCGAAAATCATGATGAACCCTTAACCATGAATAACATCTCAGAAAGATTTATGCATCTGCCAAGGCTTGAGAGCCCAACTCTTCCAAACCTTCCCGCTTTCGATCAGGATCGTAGCTTCAAAGCTTGCTATCAGGCCATTGATGACATGTTCATAGAAACTGAGCCGCCTTCAACAAACCAACAAAGCAATGGTTGCGACAATAATGAGCTAGTTGATGATCACGAGGACCCCAAAAGAAGGGTAAATGACTGGGTTACCCTTGATAGGCTTGTGGCATCCCAACTAGGTCAACTCAATGGCCAAGATCAAGTGACACCAAAGCACTTGTCTTGCTTTGGAGATCCAAACATGGCCTTTTGTTCTTCCCCTCCTCCTCGTAATGATCATGACCATGACGTACAACTATCATATCCATACCTACGTACAAGTAGTTCATCCCATCATCAATCCGACGTATACAACAACGAGAATGATCTGTGGAACTTCACCAAATCGTCGTCATCACCGTCATCAACGGACCCGCTTTGCCACTTGTCGGTGTAA

Protein Analysis

402

Amino Acids

46.13

Weight (kDa)

5.94

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 144 1.7e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32770
fragaria_vesca FvH4_5g10690
malus_domestica MD06G1121400.v1.1 MD14G1137900.v1.1
prunus_persica Prupe.5G131900_v2.0.a1
pyrus_communis pycom06g11260 pycom14g11310
rosa_chinensis RchiOBHm_Chr7g0187451
rosa_laevigata RLG00000004780
rosa_multiflora Rmu_sc0001230.1_g000011
rosa_roxburghii Rroxscaffold_3G00267410
rosa_rugosa Rorug06G0481700
rosa_samantha Rh7AG086200 Rh7BG087700 Rh7CG087100 Rh7DG088700
rosa_wichuraiana Rw7G007610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccI GTMKAC 1 cut(s) 1119
AciI CCGC 5 cut(s) 313, 333, 756, 827, 1184
AclWI GGATC 3 cut(s) 419, 777, 998
AcoI YGGCCR 1 cut(s) 961
AcuI CTGAAG 1 cut(s) 217
AfaI GTAC 4 cut(s) 227, 641, 1062, 1087
AfiI CCNNNNNNNGG 7 cut(s) 123, 297, 312, 498, 900, 927, 1198
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 6 cut(s) 185, 340, 523, 606, 781, 834
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 8 cut(s) 85, 166, 386, 471, 661, 777, 785, 871
AluI AGCT 8 cut(s) 85, 166, 386, 471, 661, 777, 785, 871
Alw21I GWGCWC 1 cut(s) 388
AlwI GGATC 3 cut(s) 419, 777, 998
AoxI GGCC 4 cut(s) 303, 795, 961, 1014
ArsI GACNNNNNNTTYG 2 cut(s) 974, 1006
AspS9I GGNCC 2 cut(s) 889, 1180
AsuC2I CCSGG 2 cut(s) 292, 310
AsuHPI GGTGA 2 cut(s) 1141, 1158
AvaII GGWCC 2 cut(s) 889, 1180
BalI TGGCCA 1 cut(s) 963
BanII GRGCYC 3 cut(s) 388, 557, 737
BauI CACGAG 1 cut(s) 884
Bbv12I GWGCWC 1 cut(s) 388
BccI CCATC 3 cut(s) 75, 608, 1110
BciT130I CCWGG 1 cut(s) 54
BclI TGATCA 4 cut(s) 10, 625, 880, 1045
BcnI CCSGG 2 cut(s) 292, 310
BfaI CTAG 3 cut(s) 468, 872, 947
BfmI CTRYAG 1 cut(s) 328
BisI GCNGC 2 cut(s) 334, 827
BlsI GCNGC 2 cut(s) 335, 828
Bme1390I CCNGG 3 cut(s) 54, 292, 310
Bme18I GGWCC 2 cut(s) 889, 1180
BmgT120I GGNCC 2 cut(s) 889, 1180
BmiI GGNNCC 3 cut(s) 205, 891, 1182
BmrFI CCNGG 3 cut(s) 54, 292, 310
BmrI ACTGGG 1 cut(s) 922
BmsI GCATC 2 cut(s) 724, 947
BmuI ACTGGG 1 cut(s) 922
BoxI GACNNNNGTC 1 cut(s) 400
BplI GAGNNNNNCTC 2 cut(s) 724, 756
BpmI CTGGAG 1 cut(s) 36
BpuEI CTTGAG 4 cut(s) 27, 188, 452, 749
BpuMI CCSGG 2 cut(s) 292, 310
BsaAI YACGTR 1 cut(s) 1085
BsaBI GATNNNNATC 1 cut(s) 768
BsaJI CCNNGG 3 cut(s) 173, 573, 722
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 7 cut(s) 123, 297, 312, 498, 900, 927, 1198
Bse1I ACTGG 1 cut(s) 917
Bse3DI GCAATG 1 cut(s) 856
Bse8I GATNNNNATC 1 cut(s) 768
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 173, 573, 722
BseGI GGATG 3 cut(s) 67, 938, 1097
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 7 cut(s) 123, 297, 312, 498, 900, 927, 1198
BseMI GCAATG 1 cut(s) 856
BseMII CTCAG 2 cut(s) 714, 813
BseNI ACTGG 1 cut(s) 917
BseRI GAGGAG 4 cut(s) 95, 378, 1023, 1026
BshFI GGCC 4 cut(s) 305, 797, 963, 1016
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 3 cut(s) 261, 291, 309
BslFI GGGAC 2 cut(s) 191, 329
BslI CCNNNNNNNGG 7 cut(s) 123, 297, 312, 498, 900, 927, 1198
BsmFI GGGAC 2 cut(s) 191, 329
BsnI GGCC 4 cut(s) 305, 797, 963, 1016
Bsp1286I GDGCHC 3 cut(s) 388, 557, 737
Bsp1407I TGTACA 1 cut(s) 639
Bsp19I CCATGG 2 cut(s) 173, 573
BspACI CCGC 5 cut(s) 313, 333, 756, 827, 1184
BspANI GGCC 4 cut(s) 305, 797, 963, 1016
BspCNI CTCAG 2 cut(s) 713, 814
BspHI TCATGA 3 cut(s) 451, 670, 1048
BspLI GGNNCC 3 cut(s) 205, 891, 1182
BspPI GGATC 3 cut(s) 419, 777, 998
BsrDI GCAATG 1 cut(s) 856
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 1 cut(s) 917
BssECI CCNNGG 3 cut(s) 173, 573, 722
BssNAI GTATAC 1 cut(s) 1120
BssSI CACGAG 1 cut(s) 884
BssT1I CCWWGG 3 cut(s) 173, 573, 722
Bst1107I GTATAC 1 cut(s) 1120
Bst2BI CACGAG 1 cut(s) 884
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 463, 1170
Bst6I CTCTTC 3 cut(s) 72, 489, 747
BstAPI GCANNNNNTGC 2 cut(s) 287, 855
BstAUI TGTACA 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 1085
BstC8I GCNNGC 2 cut(s) 659, 787
BstDEI CTNAG 4 cut(s) 101, 547, 700, 822
BstDSI CCRYGG 2 cut(s) 173, 573
BstEII GGTNACC 1 cut(s) 916
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 67, 938, 1097
BstMWI GCNNNNNNNGC 2 cut(s) 287, 855
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 811
BstPAI GACNNNNGTC 1 cut(s) 400
BstPI GGTNACC 1 cut(s) 916
BstSCI CCNGG 3 cut(s) 52, 290, 308
BstSFI CTRYAG 1 cut(s) 328
BstSNI TACGTA 1 cut(s) 1085
BstX2I RGATCY 1 cut(s) 1003
BstXI CCANNNNNNTGG 1 cut(s) 599
BstYI RGATCY 1 cut(s) 1003
BstZ17I GTATAC 1 cut(s) 1120
BsuRI GGCC 4 cut(s) 305, 797, 963, 1016
BtgI CCRYGG 2 cut(s) 173, 573
BtsCI GGATG 3 cut(s) 67, 938, 1097
Cac8I GCNNGC 2 cut(s) 659, 787
CciI TCATGA 3 cut(s) 451, 670, 1048
Cfr13I GGNCC 2 cut(s) 889, 1180
Csp6I GTAC 4 cut(s) 226, 640, 1061, 1086
CviQI GTAC 4 cut(s) 226, 640, 1061, 1086
DdeI CTNAG 4 cut(s) 101, 547, 700, 822
EaeI YGGCCR 1 cut(s) 961
Eam1104I CTCTTC 3 cut(s) 72, 489, 747
EarI CTCTTC 3 cut(s) 72, 489, 747
Ecl136II GAGCTC 1 cut(s) 386
Eco105I TACGTA 1 cut(s) 1085
Eco130I CCWWGG 3 cut(s) 173, 573, 722
Eco24I GRGCYC 3 cut(s) 388, 557, 737
Eco47I GGWCC 2 cut(s) 889, 1180
Eco53kI GAGCTC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 916
EcoICRI GAGCTC 1 cut(s) 386
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 889
EcoO65I GGTNACC 1 cut(s) 916
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 3 cut(s) 173, 573, 722
EcoT22I ATGCAT 2 cut(s) 420, 717
EcoT38I GRGCYC 3 cut(s) 388, 557, 737
ErhI CCWWGG 3 cut(s) 173, 573, 722
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 141, 173
FaqI GGGAC 2 cut(s) 191, 329
FauI CCCGC 3 cut(s) 306, 763, 1191
FauNDI CATATG 1 cut(s) 15
FbaI TGATCA 4 cut(s) 10, 625, 880, 1045
FblI GTMKAC 1 cut(s) 1119
Fnu4HI GCNGC 2 cut(s) 334, 827
FokI GGATG 3 cut(s) 54, 925, 1084
FriOI GRGCYC 3 cut(s) 388, 557, 737
Fsp4HI GCNGC 2 cut(s) 334, 827
FspBI CTAG 3 cut(s) 468, 872, 947
GluI GCNGC 2 cut(s) 334, 827
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 4 cut(s) 305, 797, 963, 1016
HapII CCGG 3 cut(s) 261, 291, 309
HincII GTYRAC 1 cut(s) 953
HindII GTYRAC 1 cut(s) 953
HindIII AAGCTT 2 cut(s) 164, 783
HinfI GANTC 4 cut(s) 19, 63, 482, 578
HpaII CCGG 3 cut(s) 261, 291, 309
HphI GGTGA 2 cut(s) 1141, 1158
Hpy166II GTNNAC 2 cut(s) 953, 1120
Hpy188I TCNGA 6 cut(s) 7, 62, 406, 540, 703, 1114
Hpy8I GTNNAC 2 cut(s) 953, 1120
Hpy99I CGWCG 2 cut(s) 1118, 1162
HpyAV CCTTC 4 cut(s) 295, 761, 840, 894
HpyCH4III ACNGT 2 cut(s) 463, 1170
HpyCH4IV ACGT 3 cut(s) 1059, 1084, 1116
HpyCH4V TGCA 4 cut(s) 195, 418, 657, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 855
HpyF3I CTNAG 4 cut(s) 101, 547, 700, 822
HpySE526I ACGT 3 cut(s) 1059, 1084, 1116
Ksp22I TGATCA 4 cut(s) 10, 625, 880, 1045
LmnI GCTCC 2 cut(s) 82, 391
LpnPI CCDG 8 cut(s) 39, 66, 274, 304, 322, 752, 779, 898
LweI GCATC 2 cut(s) 724, 947
MaeI CTAG 3 cut(s) 468, 872, 947
MaeII ACGT 3 cut(s) 1059, 1084, 1116
MaeIII GTNAC 2 cut(s) 916, 973
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 3 cut(s) 388, 557, 737
MlsI TGGCCA 1 cut(s) 963
MluCI AATT 2 cut(s) 141, 345
MluNI TGGCCA 1 cut(s) 963
MlyI GAGTC 3 cut(s) 28, 491, 572
MmeI TCCRAC 2 cut(s) 95, 1137
Mox20I TGGCCA 1 cut(s) 963
Mph1103I ATGCAT 2 cut(s) 420, 717
MscI TGGCCA 1 cut(s) 963
MseI TTAA 2 cut(s) 159, 683
MslI CAYNNNNRTG 1 cut(s) 1053
Msp20I TGGCCA 1 cut(s) 963
MspI CCGG 3 cut(s) 261, 291, 309
MspR9I CCNGG 3 cut(s) 54, 292, 310
MvaI CCWGG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 287, 855
NciI CCSGG 2 cut(s) 292, 310
NcoI CCATGG 2 cut(s) 173, 573
NdeI CATATG 1 cut(s) 15
NlaIV GGNNCC 3 cut(s) 205, 891, 1182
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 1 cut(s) 973
NsiI ATGCAT 2 cut(s) 420, 717
NspI RCATGY 1 cut(s) 811
PagI TCATGA 3 cut(s) 451, 670, 1048
PciI ACATGT 1 cut(s) 807
PcsI WCGNNNNNNNCGW 1 cut(s) 1166
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 2 cut(s) 335, 828
PleI GAGTC 3 cut(s) 27, 490, 572
PpsI GAGTC 3 cut(s) 27, 490, 572
Ppu21I YACGTR 1 cut(s) 1085
PpuMI RGGWCCY 1 cut(s) 889
PscI ACATGT 1 cut(s) 807
PshAI GACNNNNGTC 1 cut(s) 400
PsiI TTATAA 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 889
Psp6I CCWGG 1 cut(s) 52
PspEI GGTNACC 1 cut(s) 916
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 205, 891, 1182
PspPI GGNCC 2 cut(s) 889, 1180
PspPPI RGGWCCY 1 cut(s) 889
PsrI GAACNNNNNNTAC 2 cut(s) 1078, 1110
PsuI RGATCY 1 cut(s) 1003
RsaI GTAC 4 cut(s) 227, 641, 1062, 1087
RsaNI GTAC 4 cut(s) 226, 640, 1061, 1086
RseI CAYNNNNRTG 1 cut(s) 1053
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 2 cut(s) 159, 683
SatI GCNGC 2 cut(s) 334, 827
Sau96I GGNCC 2 cut(s) 889, 1180
SchI GAGTC 3 cut(s) 28, 491, 572
ScrFI CCNGG 3 cut(s) 54, 292, 310
SduI GDGCHC 3 cut(s) 388, 557, 737
SfaNI GCATC 2 cut(s) 724, 947
SfcI CTRYAG 1 cut(s) 328
SinI GGWCC 2 cut(s) 889, 1180
SmiMI CAYNNNNRTG 1 cut(s) 1053
SmlI CTYRAG 4 cut(s) 42, 167, 431, 728
SmoI CTYRAG 4 cut(s) 42, 167, 431, 728
SnaBI TACGTA 1 cut(s) 1085
Sse9I AATT 2 cut(s) 141, 345
SsiI CCGC 5 cut(s) 313, 333, 756, 827, 1184
SspMI CTAG 3 cut(s) 468, 872, 947
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 3 cut(s) 52, 290, 308
StyI CCWWGG 3 cut(s) 173, 573, 722
TaaI ACNGT 2 cut(s) 463, 1170
TaiI ACGT 3 cut(s) 1062, 1087, 1119
TaqI TCGA 6 cut(s) 145, 268, 382, 485, 663, 762
TaqII GACCGA 1 cut(s) 506
TasI AATT 2 cut(s) 141, 345
TatI WGTACW 1 cut(s) 639
TauI GCSGC 2 cut(s) 336, 829
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 2 cut(s) 159, 683
Tru9I TTAA 2 cut(s) 159, 683
TseFI GTSAC 1 cut(s) 973
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 5 cut(s) 435, 690, 704, 802, 1086
TspGWI ACGGA 1 cut(s) 1193
VpaK11BI GGWCC 2 cut(s) 889, 1180
XagI CCTNNNNNAGG 1 cut(s) 121
XceI RCATGY 1 cut(s) 811
XcmI CCANNNNNNNNNTGG 2 cut(s) 219, 848
XmiI GTMKAC 1 cut(s) 1119
XspI CTAG 3 cut(s) 468, 872, 947
Zsp2I ATGCAT 2 cut(s) 420, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.