Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014479

Physical Location & Seq

Genomic Coordinates Forward (+)

60466109 .. 60467856

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTGCAGAGGATCACATGAATCTATCTATAAATGGTCAGTCTCAGGTCCCTCCAGGCTTTCGGTTCCATCCAACCGAAGAGGAGCTTCTTCACTACTATCTCAGGAAGAAAGTTGCCTATGAGAGGATTGATCTTGACGTCATTCGAGAGGTTGATCTTAACAAGCTCGAGCCATGGGACATTCAAGAGAAGTGCAAGATAGGTTCCACCCCGCAGAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGTACTCGAACAAATCGAGCAACTGCTGCCGGATTTTGGAAGGCCACCGGCCGTGACAAGATCATCTACAGTGGCATTCGAAGAATCGGATTGAGAAAGACGCTTGTTTCTAGTTCAATTGGGGAGTCAATGGCCGAAGACGGGTGGGTGGTTTGCAGGGTATTTAAGAAGAAGAACTACCAGAAAGCCTTGGAGAGCCCTAAAGCCTCCTTCTCAATGGACTCGCCAAATAACCAAATGCTACCGGGTTCAAGAAACGACGGCGTTCTCGATCAGATTCTCTTGTACATGGGAAGAACTACTTGCAAGATCGAGAACCATGACTCACTCCATGGAAGGTTCATGCATCTTCCACGGCTCGAGAGCCAAACTTCTCTTCCCTCACTTCCAGTCCAGTTCGATCACGACCGTAGCTTCAAAGCTTGTTATCATGATCAGACCATTGATGACATGCTGATAGAAACTGATCATCATCAACAACAACAGCAACAACAACCTTCTCCAACAAACCAACCCAACGACCCGGTTGATCATCCAGATCATGATGACCCCAAAACAAGGATTGTAAATGACTGGGCTACCCTCGATCGGCTCGTTGCCTCTCAGCTCAATGGCCATGAAGACGAGACCTCAAAGCACTTGTCCTGCTTCGGTGACCCTAACATGGCCTTTTGTTCTTCTCCTCCTTCTAATGATGAGGACTTACAGTTGTCTTATCCATACCTACGTCAAGGTAGAATATCGCAGAATCAATCCGAAGTCTTCAACAGTGAGAACGATCTGTGGAGCTTCACAAAATCGTCGCCGTCGCCGTCATCATCAGACCCATTATGCCACCTGTCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

370

Amino Acids

42.38

Weight (kDa)

5.88

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	18 - 138	2.7e-34	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32770
fragaria_vesca	FvH4_5g10690
malus_domestica	MD06G1121400.v1.1 MD14G1137900.v1.1
prunus_persica	Prupe.5G131900_v2.0.a1
pyrus_communis	pycom06g11260 pycom14g11310
rosa_chinensis	RchiOBHm_Chr7g0187451
rosa_laevigata	RLG00000004780
rosa_multiflora	Rmu_sc0001230.1_g000011
rosa_roxburghii	Rroxscaffold_3G00267410
rosa_rugosa	Rorug06G0481700
rosa_samantha	Rh7AG086200 Rh7BG087700 Rh7CG087100 Rh7DG088700
rosa_wichuraiana	Rw7G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	3 cut(s)	313, 396, 877
AcuI	CTGAAG	1 cut(s)	220
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	3 cut(s)	230, 268, 551
AfiI	CCNNNNNNNGG	7 cut(s)	126, 300, 405, 822, 852, 928, 1105
AgsI	TTSAA	5 cut(s)	188, 381, 516, 682, 1030
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	6 cut(s)	88, 169, 678, 686, 871, 1053
AluI	AGCT	6 cut(s)	88, 169, 678, 686, 871, 1053
Alw26I	GTCTC	2 cut(s)	48, 884
AlwI	GGATC	1 cut(s)	21
Ama87I	CYCGRG	2 cut(s)	170, 623
AoxI	GGCC	5 cut(s)	306, 313, 396, 877, 930
ApeKI	GCWGC	1 cut(s)	290
ArsI	GACNNNNNNTTYG	2 cut(s)	890, 922
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	2 cut(s)	510, 788
AsuHPI	GGTGA	1 cut(s)	929
AsuII	TTCGAA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	170, 623
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbsI	GAAGAC	3 cut(s)	408, 891, 1018
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	5 cut(s)	300, 541, 635, 1054, 1060
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	3 cut(s)	697, 730, 793
BcnI	CCSGG	2 cut(s)	510, 788
BcoDI	GTCTC	2 cut(s)	48, 884
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	2 cut(s)	6, 331
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	57, 510, 788
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	2 cut(s)	170, 623
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	51, 68, 208
BmrFI	CCNGG	3 cut(s)	57, 510, 788
BmrI	ACTGGG	1 cut(s)	847
BmsI	GCATC	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	847
BpiI	GAAGAC	3 cut(s)	408, 891, 1018
BpmI	CTGGAG	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	343
BpuMI	CCSGG	2 cut(s)	510, 788
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	4 cut(s)	176, 453, 595, 617
Bsc4I	CCNNNNNNNGG	7 cut(s)	126, 300, 405, 822, 852, 928, 1105
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	653, 658, 842
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	4 cut(s)	176, 453, 595, 617
BseGI	GGATG	2 cut(s)	70, 796
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	7 cut(s)	126, 300, 405, 822, 852, 928, 1105
BseMII	CTCAG	3 cut(s)	59, 118, 881
BseNI	ACTGG	3 cut(s)	653, 658, 842
BseRI	GAGGAG	2 cut(s)	98, 936
BseX3I	CGGCCG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	3 cut(s)	316, 673, 853
BshFI	GGCC	5 cut(s)	308, 315, 398, 879, 932
BsiEI	CGRYCG	3 cut(s)	316, 673, 853
BsiHKCI	CYCGRG	2 cut(s)	170, 623
BsiSI	CCGG	4 cut(s)	294, 312, 509, 788
BslFI	GGGAC	2 cut(s)	35, 194
BslI	CCNNNNNNNGG	7 cut(s)	126, 300, 405, 822, 852, 928, 1105
BsmAI	GTCTC	2 cut(s)	48, 884
BsmFI	GGGAC	2 cut(s)	35, 194
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	5 cut(s)	308, 315, 398, 879, 932
Bso31I	GGTCTC	1 cut(s)	884
BsoBI	CYCGRG	2 cut(s)	170, 623
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	549
Bsp19I	CCATGG	2 cut(s)	176, 595
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	5 cut(s)	308, 315, 398, 879, 932
BspCNI	CTCAG	3 cut(s)	58, 117, 880
BspHI	TCATGA	2 cut(s)	694, 805
BspLI	GGNNCC	3 cut(s)	51, 68, 208
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	884
BsrFI	RCCGGY	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	3 cut(s)	653, 658, 842
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	4 cut(s)	176, 453, 595, 617
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	3 cut(s)	176, 453, 595
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	4 cut(s)	335, 674, 972, 1034
Bst6I	CTCTTC	2 cut(s)	75, 645
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	549
BstBI	TTCGAA	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	45, 104, 867
BstDSI	CCRYGG	3 cut(s)	176, 595, 617
BstEII	GGTNACC	1 cut(s)	917
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	70, 796
BstMAI	GTCTC	2 cut(s)	48, 884
BstMCI	CGRYCG	3 cut(s)	316, 673, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	718
BstPI	GGTNACC	1 cut(s)	917
BstSCI	CCNGG	3 cut(s)	55, 508, 786
BstSFI	CTRYAG	2 cut(s)	6, 331
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	3 cut(s)	408, 891, 1018
BstZI	CGGCCG	1 cut(s)	313
BsuRI	GGCC	5 cut(s)	308, 315, 398, 879, 932
BtgI	CCRYGG	3 cut(s)	176, 595, 617
BtsCI	GGATG	2 cut(s)	70, 796
BtsIMutI	CAGTG	2 cut(s)	340, 1039
CciI	TCATGA	2 cut(s)	694, 805
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	229, 267, 550
CviQI	GTAC	3 cut(s)	229, 267, 550
DdeI	CTNAG	3 cut(s)	45, 104, 867
EaeI	YGGCCR	3 cut(s)	313, 396, 877
EagI	CGGCCG	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	75, 645
EarI	CTCTTC	2 cut(s)	75, 645
EclXI	CGGCCG	1 cut(s)	313
Eco130I	CCWWGG	3 cut(s)	176, 453, 595
Eco24I	GRGCYC	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	220
Eco88I	CYCGRG	2 cut(s)	170, 623
Eco91I	GGTNACC	1 cut(s)	917
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	3 cut(s)	176, 453, 595
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	3 cut(s)	176, 453, 595
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 550, 582
FaqI	GGGAC	2 cut(s)	35, 194
FauI	CCCGC	1 cut(s)	222
FbaI	TGATCA	3 cut(s)	697, 730, 793
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	57, 783
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	5 cut(s)	308, 315, 398, 879, 932
HapII	CCGG	4 cut(s)	294, 312, 509, 788
HgaI	GACGC	1 cut(s)	373
Hin1I	GRCGYC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	7 cut(s)	22, 348, 389, 485, 541, 587, 1012
HpaII	CCGG	4 cut(s)	294, 312, 509, 788
HphI	GGTGA	1 cut(s)	929
Hpy188I	TCNGA	5 cut(s)	353, 540, 702, 1021, 1087
Hpy99I	CGWCG	3 cut(s)	527, 1069, 1075
HpyAV	CCTTC	5 cut(s)	298, 484, 594, 771, 960
HpyCH4III	ACNGT	4 cut(s)	335, 674, 972, 1034
HpyCH4IV	ACGT	2 cut(s)	141, 991
HpyCH4V	TGCA	5 cut(s)	8, 198, 420, 570, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	45, 104, 867
HpySE526I	ACGT	2 cut(s)	141, 991
Hsp92I	GRCGYC	1 cut(s)	141
Ksp22I	TGATCA	3 cut(s)	697, 730, 793
LmnI	GCTCC	2 cut(s)	85, 1050
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	2 cut(s)	141, 991
MaeIII	GTNAC	2 cut(s)	317, 917
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	879
MlyI	GAGTC	3 cut(s)	398, 479, 581
MmeI	TCCRAC	2 cut(s)	98, 791
Mox20I	TGGCCA	1 cut(s)	879
Mph1103I	ATGCAT	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	2 cut(s)	162, 429
Msp20I	TGGCCA	1 cut(s)	879
MspI	CCGG	4 cut(s)	294, 312, 509, 788
MspR9I	CCNGG	3 cut(s)	57, 510, 788
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	2 cut(s)	510, 788
NcoI	CCATGG	2 cut(s)	176, 595
NlaIV	GGNNCC	3 cut(s)	51, 68, 208
NmuCI	GTSAC	2 cut(s)	317, 917
NsiI	ATGCAT	1 cut(s)	612
NspI	RCATGY	1 cut(s)	718
NspV	TTCGAA	1 cut(s)	343
PaeR7I	CTCGAG	2 cut(s)	170, 623
PagI	TCATGA	2 cut(s)	694, 805
PcsI	WCGNNNNNNNCGW	4 cut(s)	277, 531, 855, 1073
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	4 cut(s)	22, 348, 541, 1012
PkrI	GCNGC	1 cut(s)	292
Ple19I	CGATCG	1 cut(s)	853
PleI	GAGTC	3 cut(s)	397, 479, 581
PpsI	GAGTC	3 cut(s)	397, 479, 581
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	917
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	3 cut(s)	51, 68, 208
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PspXI	VCTCGAGB	1 cut(s)	170
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
PstI	CTGCAG	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	853
RsaI	GTAC	3 cut(s)	230, 268, 551
RsaNI	GTAC	3 cut(s)	229, 267, 550
SaqAI	TTAA	2 cut(s)	162, 429
SatI	GCNGC	1 cut(s)	291
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	3 cut(s)	398, 479, 581
ScrFI	CCNGG	3 cut(s)	57, 510, 788
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	2 cut(s)	6, 331
Sfr274I	CTCGAG	2 cut(s)	170, 623
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	1 cut(s)	49
SlaI	CTCGAG	2 cut(s)	170, 623
SmlI	CTYRAG	2 cut(s)	170, 623
SmoI	CTYRAG	2 cut(s)	170, 623
Sse9I	AATT	1 cut(s)	381
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	55, 508, 786
StyI	CCWWGG	3 cut(s)	176, 453, 595
TaaI	ACNGT	4 cut(s)	335, 674, 972, 1034
TaiI	ACGT	2 cut(s)	144, 994
TasI	AATT	1 cut(s)	381
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	4 cut(s)	22, 348, 541, 1012
Tru1I	TTAA	2 cut(s)	162, 429
Tru9I	TTAA	2 cut(s)	162, 429
TscAI	CASTG	2 cut(s)	340, 1039
TseFI	GTSAC	2 cut(s)	317, 917
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	317, 917
TspDTI	ATGAA	3 cut(s)	35, 595, 897
TspRI	CASTG	2 cut(s)	340, 1039
VpaK11BI	GGWCC	1 cut(s)	49
XagI	CCTNNNNNAGG	1 cut(s)	124
XceI	RCATGY	1 cut(s)	718
XhoI	CTCGAG	2 cut(s)	170, 623
XspI	CTAG	1 cut(s)	375
ZraI	GACGTC	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.