Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014479

Physical Location & Seq

Genomic Coordinates Reverse (-)

7416871 .. 7417590

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG088700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCGAAGACGGGTGGGTGGTTTGCAGGGTATTTAAGAAGAAGAACTACCAGAAAGCCTTGGAGAGCCCTAAAGCCTCCTTCTCAATGGACTCGCCAAATAACCAAATGCTACCGGGTTCAAGAAACGACGGCGTTCTCGATCAGATTCTCTTGTACATGGGAAGGACTACTTGCAAGATCGAGAACCATGACTCACTCCATGAAAGGTTCATGCATCTTCCACGGCTCGAGAGCCAAACTTCTCTTCCCTCACTTCCAGTTCAGTTCGATCACGACCGTAGCTTCAAAGCTTGTTATCATGATCAGACCATTGATGATATGCTGATAGAAACTGATCATCATCAACAACAACAGCAACAACAACCTTCTCCAACAAACCAACCCAACGACCCGGTTGATCATCCAGATCATGATGACCCCAAAACAAGGATTGTAAATGACTGGGCTACCCTCGATCGGCTCGTTGCCTCTCAGCTCAATGGCCATGAAGACGAGACCTCAAAGCACTTGTCCTGCTTCGGTGACCCTAACATGGCCTTTTGTTCTTCTCCTCCTTCTAATGATGAGGACTTACAGTTGTCTTATCCATACCTACGTCAAGGTAGAATATCGCAGAATCAATCCGAAGTCTTTAACAGTGAGAACGATCTGTGGAGCTTCACAAAATCGTCGCCGTCGCCGTCATCATCAGACCCATTATGCCACCTGTCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

239

Amino Acids

27.28

Weight (kDa)

5.06

Isoelectric Point (pI)

67.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32770
fragaria_vesca	FvH4_5g10690
malus_domestica	MD06G1121400.v1.1 MD14G1137900.v1.1
prunus_persica	Prupe.5G131900_v2.0.a1
pyrus_communis	pycom06g11260 pycom14g11310
rosa_chinensis	RchiOBHm_Chr7g0187451
rosa_laevigata	RLG00000004780
rosa_multiflora	Rmu_sc0001230.1_g000011
rosa_roxburghii	Rroxscaffold_3G00267410
rosa_rugosa	Rorug06G0481700
rosa_samantha	Rh7AG086200 Rh7BG087700 Rh7CG087100 Rh7DG088700
rosa_wichuraiana	Rw7G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	3, 484
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	5 cut(s)	12, 429, 459, 535, 712
AgsI	TTSAA	2 cut(s)	123, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	4 cut(s)	285, 293, 478, 660
AluI	AGCT	4 cut(s)	285, 293, 478, 660
Alw26I	GTCTC	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	3, 484, 537
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AsuC2I	CCSGG	2 cut(s)	117, 395
AsuHPI	GGTGA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BbsI	GAAGAC	2 cut(s)	15, 498
BceAI	ACGGC	4 cut(s)	148, 242, 661, 667
BclI	TGATCA	3 cut(s)	304, 337, 400
BcnI	CCSGG	2 cut(s)	117, 395
BcoDI	GTCTC	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	117, 395
BmeT110I	CYCGRG	1 cut(s)	230
BmrFI	CCNGG	2 cut(s)	117, 395
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	454
BpiI	GAAGAC	2 cut(s)	15, 498
BpuMI	CCSGG	2 cut(s)	117, 395
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	60, 224
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 429, 459, 535, 712
Bse1I	ACTGG	2 cut(s)	260, 449
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	60, 224
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	5 cut(s)	12, 429, 459, 535, 712
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	260, 449
BseRI	GAGGAG	1 cut(s)	543
Bsh1285I	CGRYCG	2 cut(s)	280, 460
BshFI	GGCC	3 cut(s)	5, 486, 539
BsiEI	CGRYCG	2 cut(s)	280, 460
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	116, 395
BslI	CCNNNNNNNGG	5 cut(s)	12, 429, 459, 535, 712
BsmAI	GTCTC	1 cut(s)	491
BsnI	GGCC	3 cut(s)	5, 486, 539
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	9 cut(s)	142, 180, 271, 304, 337, 400, 409, 457, 649
BspANI	GGCC	3 cut(s)	5, 486, 539
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	2 cut(s)	301, 412
BspTNI	GGTCTC	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	260, 449
BssECI	CCNNGG	2 cut(s)	60, 224
BssMI	GATC	9 cut(s)	142, 180, 271, 304, 337, 400, 409, 457, 649
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	281, 579, 641
Bst6I	CTCTTC	1 cut(s)	252
BstAUI	TGTACA	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	224
BstEII	GGTNACC	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	9 cut(s)	145, 183, 274, 307, 340, 403, 412, 460, 652
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	9 cut(s)	142, 180, 271, 304, 337, 400, 409, 457, 649
BstMCI	CGRYCG	2 cut(s)	280, 460
BstPI	GGTNACC	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	115, 393
BstV2I	GAAGAC	2 cut(s)	15, 498
BsuRI	GGCC	3 cut(s)	5, 486, 539
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	646
CciI	TCATGA	2 cut(s)	301, 412
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	8 cut(s)	160, 191, 203, 214, 302, 413, 488, 535
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	9 cut(s)	144, 182, 273, 306, 339, 402, 411, 459, 651
DpnII	GATC	9 cut(s)	142, 180, 271, 304, 337, 400, 409, 457, 649
EaeI	YGGCCR	2 cut(s)	3, 484
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	524
EcoO65I	GGTNACC	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	8 cut(s)	163, 194, 206, 217, 305, 416, 491, 538
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FatI	CATG	8 cut(s)	159, 190, 202, 213, 301, 412, 487, 534
FbaI	TGATCA	3 cut(s)	304, 337, 400
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	5, 486, 539
HapII	CCGG	2 cut(s)	116, 395
Hin1II	CATG	8 cut(s)	163, 194, 206, 217, 305, 416, 491, 538
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	4 cut(s)	92, 148, 194, 619
HpaII	CCGG	2 cut(s)	116, 395
HphI	GGTGA	1 cut(s)	536
Hpy188I	TCNGA	4 cut(s)	147, 309, 628, 694
Hpy188III	TCNNGA	8 cut(s)	123, 140, 184, 232, 275, 302, 407, 413
Hpy99I	CGWCG	3 cut(s)	134, 676, 682
HpyAV	CCTTC	4 cut(s)	91, 159, 378, 567
HpyCH4III	ACNGT	3 cut(s)	281, 579, 641
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	3 cut(s)	27, 177, 217
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	8 cut(s)	163, 194, 206, 217, 305, 416, 491, 538
Ksp22I	TGATCA	3 cut(s)	304, 337, 400
Kzo9I	GATC	9 cut(s)	142, 180, 271, 304, 337, 400, 409, 457, 649
LmnI	GCTCC	1 cut(s)	657
LpnPI	CCDG	8 cut(s)	13, 65, 129, 273, 408, 420, 430, 529
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	9 cut(s)	144, 182, 273, 306, 339, 402, 411, 459, 651
MboI	GATC	9 cut(s)	142, 180, 271, 304, 337, 400, 409, 457, 649
MboII	GAAGA	7 cut(s)	20, 52, 55, 212, 239, 503, 540
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	486
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	2 cut(s)	86, 188
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	7 cut(s)	88, 262, 464, 481, 511, 562, 564
Mox20I	TGGCCA	1 cut(s)	486
Mph1103I	ATGCAT	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	2 cut(s)	36, 636
Msp20I	TGGCCA	1 cut(s)	486
MspI	CCGG	2 cut(s)	116, 395
MspR9I	CCNGG	2 cut(s)	117, 395
NciI	CCSGG	2 cut(s)	117, 395
NdeII	GATC	9 cut(s)	142, 180, 271, 304, 337, 400, 409, 457, 649
NlaIII	CATG	8 cut(s)	163, 194, 206, 217, 305, 416, 491, 538
NmuCI	GTSAC	1 cut(s)	524
NsiI	ATGCAT	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	230
PagI	TCATGA	2 cut(s)	301, 412
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 462, 680
PfeI	GAWTC	2 cut(s)	148, 619
Ple19I	CGATCG	1 cut(s)	460
PleI	GAGTC	2 cut(s)	86, 188
PpsI	GAGTC	2 cut(s)	86, 188
PspEI	GGTNACC	1 cut(s)	524
PvuI	CGATCG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	36, 636
Sau3AI	GATC	9 cut(s)	142, 180, 271, 304, 337, 400, 409, 457, 649
SchI	GAGTC	2 cut(s)	86, 188
ScrFI	CCNGG	2 cut(s)	117, 395
SduI	GDGCHC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	115, 393
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	281, 579, 641
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	5 cut(s)	141, 183, 231, 270, 456
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	148, 619
Tru1I	TTAA	2 cut(s)	36, 636
Tru9I	TTAA	2 cut(s)	36, 636
TscAI	CASTG	1 cut(s)	646
TseFI	GTSAC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	3 cut(s)	202, 219, 504
TspRI	CASTG	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.