AT1G33265

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015850
Physical Location & Seq
Forward (+)
12066595 .. 12068101
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33265.1

Sequence Viewer

Length: 534 bp
ATGTGGTCTCTTGCGCTAACGTTACCATCTCCGTCTTTGGTGTCGGTGAGGAGCACTAAACTCGGACGAAGTGTTAGTAATGGTGGCCGGAATTGGTCGGGACTTACTAAGTTGTCGGAGAAATCGAAGACTAAACGAGGTAATGGTCTCTGCTGCAAGGCGGAGCTGTCGGAGCTAGCTCCAGTCGTCTCTGCTACTTATGGTGTACTTCTTCTAGGAGGCGGTCTCTTCGCTTATAGCAAATCTGGAAGCAAAGGTTCTCTCTTTGGGGGTTTGACCGGTTCTGTTCTTATGGCATCTGCCTACTTCCTTACTAAATCACCAGAGACAAGAGTTCTCGGCGATACCATAGGTCTTGGTGCTGCCTTCCTCTTCTCTTCTGTCTTCGGATTTCGTTTGGCATCTTCTCGGAAACCAGTTCCAGCTGGTCCACTACTACTCCTTTCCATCGGCATGTTGTCCTTCTTTGTCATGGCGTATATGCACGACAGTTTACCTGCTATATCCATACCCGACCCTTTACCTCTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_14

Protein Analysis

177

Amino Acids

18.43

Weight (kDa)

10.01

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 64 - 156 1.6e-16 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015850)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33265
fragaria_vesca FvH4_5g10080 FvH4_5g10080
malus_domestica MD06G1128100.v1.1
prunus_persica Prupe.5G137900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0188191
rosa_laevigata RLG00000004720
rosa_multiflora Rmu_sc0004001.1_g000016 Rmu_sc0015196.1_g000001
rosa_roxburghii Rroxscaffold_3G00266680
rosa_rugosa Rorug06G0489000
rosa_samantha Rh7AG093300 Rh7BG094800 Rh7CG094600 Rh7DG095200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AciI CCGC 2 cut(s) 161, 222
AclI AACGTT 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 85
AfaI GTAC 1 cut(s) 207
AgeI ACCGGT 1 cut(s) 278
AluBI AGCT 4 cut(s) 166, 175, 179, 425
AluI AGCT 4 cut(s) 166, 175, 179, 425
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 5 cut(s) 12, 152, 193, 230, 320
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 153, 362
AsiGI ACCGGT 1 cut(s) 278
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 2 cut(s) 58, 312
AsuNHI GCTAGC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 428
BbsI GAAGAC 2 cut(s) 134, 376
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 140, 349
BccI CCATC 2 cut(s) 34, 455
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BcoDI GTCTC 5 cut(s) 12, 152, 193, 230, 320
BfaI CTAG 2 cut(s) 176, 215
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 2 cut(s) 154, 363
BlsI GCNGC 2 cut(s) 155, 364
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmsI GCATC 2 cut(s) 305, 410
BmtI GCTAGC 1 cut(s) 179
BpiI GAAGAC 2 cut(s) 134, 376
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 1 cut(s) 165
BsaI GGTCTC 3 cut(s) 12, 152, 230
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 182, 416
BseNI ACTGG 2 cut(s) 182, 416
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 140, 349
BshFI GGCC 1 cut(s) 87
BshTI ACCGGT 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 88, 279
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 5 cut(s) 12, 152, 193, 230, 320
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 3 cut(s) 12, 152, 230
Bsp1286I GDGCHC 1 cut(s) 56
BspACI CCGC 2 cut(s) 161, 222
BspANI GGCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 505
BspOI GCTAGC 1 cut(s) 179
BspTNI GGTCTC 3 cut(s) 12, 152, 230
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 2 cut(s) 182, 416
BssAI RCCGGY 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 3 cut(s) 233, 377, 382
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 108, 531
BstHHI GCGC 1 cut(s) 16
BstMAI GTCTC 5 cut(s) 12, 152, 193, 230, 320
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 140, 349
BstV2I GAAGAC 2 cut(s) 134, 376
BsuRI GGCC 1 cut(s) 87
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 206
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 2 cut(s) 454, 472
CviJI RGCY 5 cut(s) 87, 166, 175, 179, 425
CviKI_1 RGCY 5 cut(s) 87, 166, 175, 179, 425
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 108, 531
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 3 cut(s) 233, 377, 382
EarI CTCTTC 3 cut(s) 233, 377, 382
EciI GGCGGA 1 cut(s) 176
Eco31I GGTCTC 3 cut(s) 12, 152, 230
Eco47I GGWCC 1 cut(s) 428
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 2 cut(s) 457, 475
FaqI GGGAC 1 cut(s) 114
FatI CATG 2 cut(s) 453, 471
Fnu4HI GCNGC 2 cut(s) 154, 363
Fsp4HI GCNGC 2 cut(s) 154, 363
FspBI CTAG 2 cut(s) 176, 215
GlaI GCGC 1 cut(s) 15
GluI GCNGC 2 cut(s) 154, 363
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 87
HapII CCGG 2 cut(s) 88, 279
HhaI GCGC 1 cut(s) 16
Hin1II CATG 2 cut(s) 457, 475
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HpaII CCGG 2 cut(s) 88, 279
HphI GGTGA 2 cut(s) 58, 312
Hpy166II GTNNAC 3 cut(s) 206, 431, 494
Hpy188I TCNGA 5 cut(s) 65, 118, 172, 389, 411
Hpy188III TCNNGA 2 cut(s) 99, 246
Hpy8I GTNNAC 3 cut(s) 206, 431, 494
HpyAV CCTTC 2 cut(s) 376, 472
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 156, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 108, 531
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 2 cut(s) 457, 475
HspAI GCGC 1 cut(s) 14
LmnI GCTCC 4 cut(s) 51, 163, 172, 184
LpnPI CCDG 9 cut(s) 101, 195, 231, 292, 336, 411, 429, 435, 510
Lsp1109I GCAGC 2 cut(s) 140, 349
LweI GCATC 2 cut(s) 305, 410
MaeI CTAG 2 cut(s) 176, 215
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 21
MboII GAAGA 7 cut(s) 139, 203, 220, 364, 369, 376, 396
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 96, 150
MnlI CCTC 5 cut(s) 42, 131, 212, 380, 534
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 88, 279
MwoI GCNNNNNNNGC 1 cut(s) 172
NheI GCTAGC 1 cut(s) 175
NlaIII CATG 2 cut(s) 457, 475
NmeAIII GCCGAG 1 cut(s) 318
NspI RCATGY 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 2 cut(s) 155, 364
Psp1406I AACGTT 1 cut(s) 20
PspPI GGNCC 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 452
SatI GCNGC 2 cut(s) 154, 363
Sau96I GGNCC 1 cut(s) 428
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 2 cut(s) 305, 410
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 452
Sse9I AATT 1 cut(s) 91
SsiI CCGC 2 cut(s) 161, 222
SspMI CTAG 2 cut(s) 176, 215
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 125
TasI AATT 1 cut(s) 91
TatI WGTACW 1 cut(s) 205
TseI GCWGC 2 cut(s) 153, 362
TspGWI ACGGA 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 428
XceI RCATGY 1 cut(s) 457
XspI CTAG 2 cut(s) 176, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.