Rroxscaffold_3G00266680

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015850
Physical Location & Seq
Reverse (-)
59880891 .. 59883363
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266680.1

Sequence Viewer

Length: 267 bp
ATGCCCAGACTACCTCTGCCGTCTATGGATTCCTCCTCCTCAGCGGTGGCTTCTTTGCCTGCTTACTATCTGATGAAAACACCAGAGACAGAAGCTCTTGGTGATGCCCTTGGCTTTGGATCAGCATTCCTTTTTGCTTCTGTATTTGGTATCCGATTAGCAGCTACTCGGAAATTTGCTCCTGCAGGCCCTCTCTTGGCTCTTTCCCTCAGTGCACTGGCTGTTTTTATAACAGCATACCTTCAAGATAGTGTCACTACTCTTTAG

Protein Analysis

88

Amino Acids

9.16

Weight (kDa)

6.0

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 13 - 76 8.1e-07 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015850)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33265
fragaria_vesca FvH4_5g10080 FvH4_5g10080
malus_domestica MD06G1128100.v1.1
prunus_persica Prupe.5G137900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0188191
rosa_laevigata RLG00000004720
rosa_multiflora Rmu_sc0004001.1_g000016 Rmu_sc0015196.1_g000001
rosa_roxburghii Rroxscaffold_3G00266680
rosa_rugosa Rorug06G0489000
rosa_samantha Rh7AG093300 Rh7BG094800 Rh7CG094600 Rh7DG095200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 2 cut(s) 95, 164
AluI AGCT 2 cut(s) 95, 164
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 80
Alw44I GTGCAC 1 cut(s) 213
AlwI GGATC 1 cut(s) 127
AoxI GGCC 1 cut(s) 187
ApaLI GTGCAC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 4
BciVI GTATCC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 183
BfuI GTATCC 1 cut(s) 161
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 54, 223
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 25, 28
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 53, 222
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 60, 187
BstDEI CTNAG 2 cut(s) 40, 209
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 173
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 215, 217
Cac8I GCNNGC 2 cut(s) 60, 187
Cfr13I GGNCC 1 cut(s) 188
CviJI RGCY 7 cut(s) 50, 95, 114, 164, 189, 200, 221
CviKI_1 RGCY 7 cut(s) 50, 95, 114, 164, 189, 200, 221
DdeI CTNAG 2 cut(s) 40, 209
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaiI YATR 3 cut(s) 26, 230, 238
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 189
HinfI GANTC 1 cut(s) 29
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 72, 155, 171
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 185, 215
HpyF3I CTNAG 2 cut(s) 40, 209
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 6 cut(s) 19, 72, 96, 171, 195, 203
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 173
MnlI CCTC 6 cut(s) 24, 43, 46, 49, 201, 218
MspA1I CMGCKG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 125
NdeII GATC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 253
PctI GAATGC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 163
PsiI TTATAA 1 cut(s) 230
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 187
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 188
SbfI CCTGCAGG 1 cut(s) 187
SdaI CCTGCAGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 217
SetI ASST 4 cut(s) 16, 97, 166, 243
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 183
Sse8387I CCTGCAGG 1 cut(s) 187
Sse9I AATT 1 cut(s) 173
SsiI CCGC 1 cut(s) 44
StyI CCWWGG 1 cut(s) 109
TasI AATT 1 cut(s) 173
TfiI GAWTC 1 cut(s) 29
TscAI CASTG 2 cut(s) 217, 222
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 2 cut(s) 217, 222
VneI GTGCAC 1 cut(s) 213
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.