Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015850

Physical Location & Seq

Genomic Coordinates Forward (+)

7993309 .. 7995755

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG095200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATGGCGTCGGCCACTTTCAATTTCTCCAGGGTTTGTTTGTACCAGCACCATTCCACAGTTCCCAGATCCAAATCCTCTGCATTAGTTTCAAATTCTAAACCTTTTCGCTGCGATTTTATCGCCGGAAATGAAAAACTGATACTAGATAATGCGACTAGTCTCAGAACCAAAGCCAAGTTAGCTCCCAACCCCCGTCGTCGGTTTTCGTGCACTTCTAATCTGGCGGAGTATGCCCAGACTACCTCTGCCGTCTATGGATTCCTCCTCCTCAGCGGTGGCTTCTTCGCCTGTAAGCTCCTCTTCTATAAAGACTCCAATTTTTTTTTTCTTTTTCAATTAATGGGGATTTTTGTTGTTGTTGTTGTTTGGGCGCAGATACTAGGACAGGAAGCAAAGGGTCACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009611 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

136

Amino Acids

15.25

Weight (kDa)

9.78

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33265
fragaria_vesca	FvH4_5g10080 FvH4_5g10080
malus_domestica	MD06G1128100.v1.1
prunus_persica	Prupe.5G137900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188191
rosa_laevigata	RLG00000004720
rosa_multiflora	Rmu_sc0004001.1_g000016 Rmu_sc0015196.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266680
rosa_rugosa	Rorug06G0489000
rosa_samantha	Rh7AG093300 Rh7BG094800 Rh7CG094600 Rh7DG095200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	227, 276
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	22, 93, 338
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	2 cut(s)	185, 298
AluI	AGCT	2 cut(s)	185, 298
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	94
AseI	ATTAAT	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	4 cut(s)	146, 159, 383, 409
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	178, 286
BseRI	GAGGAG	3 cut(s)	257, 260, 290
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	2 cut(s)	227, 276
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	2 cut(s)	177, 285
BspPI	GGATC	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	68
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	164, 272
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 233
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	43
CviJI	RGCY	5 cut(s)	14, 176, 185, 282, 298
CviKI_1	RGCY	5 cut(s)	14, 176, 185, 282, 298
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	164, 272
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
EciI	GGCGGA	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	29
FaiI	YATR	3 cut(s)	234, 258, 309
FalI	AAGNNNNNCTT	3 cut(s)	287, 319, 389
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	4 cut(s)	146, 159, 383, 409
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	2 cut(s)	261, 314
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	3 cut(s)	13, 201, 204
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	83, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 233
HpyF3I	CTNAG	2 cut(s)	164, 272
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	2 cut(s)	190, 303
LpnPI	CCDG	9 cut(s)	16, 43, 59, 79, 139, 209, 251, 304, 374
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	4 cut(s)	146, 159, 383, 409
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	2 cut(s)	277, 295
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	4 cut(s)	22, 94, 319, 338
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	6 cut(s)	88, 256, 275, 278, 281, 311
MseI	TTAA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	182, 233
NdeII	GATC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PshBI	ATTAAT	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	4 cut(s)	106, 187, 248, 300
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	4 cut(s)	22, 94, 319, 338
SsiI	CCGC	2 cut(s)	227, 276
SspMI	CTAG	4 cut(s)	146, 159, 383, 409
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	4 cut(s)	22, 94, 319, 338
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	147
VneI	GTGCAC	1 cut(s)	211
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	4 cut(s)	146, 159, 383, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.