Prupe.5G137900_v2.0.a1

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015850
Physical Location & Seq
Forward (+)
12985372 .. 12987201
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G137900.1

Sequence Viewer

Length: 549 bp
ATGTCGTCGTCTACTTTGCATTTGGCTTCAGCGGTAACCAGGGGATGCCTGTATGAGCGCAATCCCAGAATTCCCAGTTTCAAATCTCCTGCGTTTTCCAATTCTCATCCTTGTCGCTGCAATTACAATGCGGGAAATGGCAAATTGGCAATGAACAATGCAAGCTTCAAAACCAAACCCAAAACGCAGCGTCGTCGACTCTTGTGCACTTCTCAGCTAGCAGAGTATGCCCCAACTACTTCTGCAGTCTACGGGTTCCTGCTCCTCAGCGGTGGTCTATTTGCTTATGCGAGATCAGGAAGCAAGGGGTCAATTCTCGGCGGGGTTTCAGGAGCAGCTCTGATGGGCACTGCTTACTATCTGATGCAAACACCAGAGACAAAAGCTATTGGTGATGCCCTTGGGTTCGGATCAGCATTCCTTTTCGCTTCGGTATTTGGTATACGATTAGCCGCTACCCGGAAACTGGCTCCTGCAGGCCCTCTGTTAGCTCTTTCTCTTAGTGCGTTGGCTGTGTTTATATCAGCATATCTACAAGATAGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_14

Protein Analysis

183

Amino Acids

19.16

Weight (kDa)

10.03

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015850)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33265
fragaria_vesca FvH4_5g10080 FvH4_5g10080
malus_domestica MD06G1128100.v1.1
prunus_persica Prupe.5G137900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0188191
rosa_laevigata RLG00000004720
rosa_multiflora Rmu_sc0004001.1_g000016 Rmu_sc0015196.1_g000001
rosa_roxburghii Rroxscaffold_3G00266680
rosa_rugosa Rorug06G0489000
rosa_samantha Rh7AG093300 Rh7BG094800 Rh7CG094600 Rh7DG095200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 11, 196, 249, 442
AciI CCGC 5 cut(s) 32, 131, 270, 321, 453
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 459, 466
AgsI TTSAA 2 cut(s) 82, 169
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 5 cut(s) 165, 217, 338, 386, 491
AluI AGCT 5 cut(s) 165, 217, 338, 386, 491
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 371
Alw44I GTGCAC 1 cut(s) 205
AlwI GGATC 1 cut(s) 418
AoxI GGCC 1 cut(s) 478
ApaLI GTGCAC 1 cut(s) 205
ApeKI GCWGC 3 cut(s) 117, 187, 335
ApoI RAATTY 1 cut(s) 69
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 479
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 404
AsuNHI GCTAGC 1 cut(s) 217
BaeGI GKGCMC 2 cut(s) 209, 350
Bbv12I GWGCWC 1 cut(s) 209
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 3 cut(s) 104, 199, 347
BccI CCATC 1 cut(s) 337
BcgI CGANNNNNNTGC 4 cut(s) 176, 186, 210, 220
BciT130I CCWGG 1 cut(s) 40
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 2 cut(s) 243, 474
BisI GCNGC 4 cut(s) 118, 188, 336, 453
BlsI GCNGC 4 cut(s) 119, 189, 337, 454
Bme1390I CCNGG 2 cut(s) 40, 460
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 257, 471
BmrFI CCNGG 2 cut(s) 40, 460
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 3 cut(s) 35, 354, 385
BmtI GCTAGC 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 39, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 466
Bse1I ACTGG 2 cut(s) 75, 471
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 39, 400
BseGI GGATG 2 cut(s) 50, 106
BseLI CCNNNNNNNGG 2 cut(s) 459, 466
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 227, 280
BseNI ACTGG 2 cut(s) 75, 471
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 2 cut(s) 209, 350
BseXI GCAGC 3 cut(s) 104, 199, 347
BshFI GGCC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 460
BslI CCNNNNNNNGG 2 cut(s) 459, 466
BsmAI GTCTC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 1 cut(s) 480
Bsp1286I GDGCHC 2 cut(s) 209, 350
Bsp143I GATC 2 cut(s) 293, 410
BspACI CCGC 5 cut(s) 32, 131, 270, 321, 453
BspANI GGCC 1 cut(s) 480
BspCNI CTCAG 2 cut(s) 226, 279
BspLI GGNNCC 2 cut(s) 257, 471
BspMAI CTGCAG 2 cut(s) 247, 478
BspOI GCTAGC 1 cut(s) 221
BspPI GGATC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 2 cut(s) 75, 471
BssECI CCNNGG 2 cut(s) 39, 400
BssMI GATC 2 cut(s) 293, 410
BssNAI GTATAC 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 163, 219, 478
BstDEI CTNAG 3 cut(s) 213, 266, 500
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 2 cut(s) 50, 106
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 2 cut(s) 296, 413
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 2 cut(s) 293, 410
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 40
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 2 cut(s) 38, 458
BstSFI CTRYAG 2 cut(s) 243, 474
BstSLI GKGCMC 2 cut(s) 209, 350
BstV1I GCAGC 3 cut(s) 104, 199, 347
BstZ17I GTATAC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 480
BtsCI GGATG 2 cut(s) 50, 106
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 163, 219, 478
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 479
CseI GACGC 1 cut(s) 179
DdeI CTNAG 3 cut(s) 213, 266, 500
DpnI GATC 2 cut(s) 295, 412
DpnII GATC 2 cut(s) 293, 410
Eco130I CCWWGG 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 479
EcoO65I GGTNACC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FaiI YATR 6 cut(s) 54, 228, 288, 443, 521, 529
FauI CCCGC 2 cut(s) 124, 314
FblI GTMKAC 4 cut(s) 11, 196, 249, 442
Fnu4HI GCNGC 4 cut(s) 118, 188, 336, 453
FokI GGATG 2 cut(s) 57, 93
Fsp4HI GCNGC 4 cut(s) 118, 188, 336, 453
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 59
GluI GCNGC 4 cut(s) 118, 188, 336, 453
HaeIII GGCC 1 cut(s) 480
HapII CCGG 1 cut(s) 460
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 60
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 1 cut(s) 198
HpaII CCGG 1 cut(s) 460
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 5 cut(s) 12, 197, 207, 250, 443
Hpy188I TCNGA 3 cut(s) 342, 363, 410
Hpy188III TCNNGA 2 cut(s) 297, 330
Hpy8I GTNNAC 5 cut(s) 12, 197, 207, 250, 443
Hpy99I CGWCG 3 cut(s) 10, 195, 198
HpyCH4V TGCA 7 cut(s) 19, 120, 161, 207, 245, 367, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 3 cut(s) 213, 266, 500
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 2 cut(s) 293, 410
LmnI GCTCC 3 cut(s) 267, 332, 475
Lsp1109I GCAGC 3 cut(s) 104, 199, 347
LweI GCATC 3 cut(s) 35, 354, 385
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 34, 542
MalI GATC 2 cut(s) 295, 412
MboI GATC 2 cut(s) 293, 410
MhlI GDGCHC 2 cut(s) 209, 350
MluCI AATT 5 cut(s) 69, 100, 121, 143, 312
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 2 cut(s) 275, 492
MspA1I CMGCKG 2 cut(s) 32, 270
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 2 cut(s) 40, 460
Mva1269I GAATGC 1 cut(s) 416
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 460
NdeII GATC 2 cut(s) 293, 410
NheI GCTAGC 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 257, 471
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 542
PctI GAATGC 1 cut(s) 416
PkrI GCNGC 4 cut(s) 119, 189, 337, 454
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 257, 471
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 2 cut(s) 247, 478
SalI GTCGAC 1 cut(s) 195
SatI GCNGC 4 cut(s) 118, 188, 336, 453
Sau3AI GATC 2 cut(s) 293, 410
Sau96I GGNCC 1 cut(s) 479
SbfI CCTGCAGG 1 cut(s) 478
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 2 cut(s) 40, 460
SdaI CCTGCAGG 1 cut(s) 478
SduI GDGCHC 2 cut(s) 209, 350
SetI ASST 5 cut(s) 167, 219, 340, 388, 493
SfaNI GCATC 3 cut(s) 35, 354, 385
SfcI CTRYAG 2 cut(s) 243, 474
Sse8387I CCTGCAGG 1 cut(s) 478
Sse9I AATT 5 cut(s) 69, 100, 121, 143, 312
SsiI CCGC 5 cut(s) 32, 131, 270, 321, 453
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 38, 458
StyI CCWWGG 1 cut(s) 400
TaqI TCGA 1 cut(s) 196
TasI AATT 5 cut(s) 69, 100, 121, 143, 312
TauI GCSGC 1 cut(s) 455
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 3 cut(s) 117, 187, 335
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 355
VneI GTGCAC 1 cut(s) 205
XapI RAATTY 1 cut(s) 69
XmiI GTMKAC 4 cut(s) 11, 196, 249, 442
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.