FvH4_5g10080

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015850
Physical Location & Seq
Reverse (-)
5747199 .. 5750316
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10080.t2

Sequence Viewer

Length: 636 bp
ATGATCCTCTTTCTCAATTATCTTTGCAATCTAGAATGGAGAGTGGGAGTGTGTATATCCCCCACACAAGTCCAGAAGCTCACTGCGATGATGGCGTCGGCCACTCTCAGTTTCTCCAGGGTTTGCTTCTCCCAACACCATTCCACTATTCCCAGACCCAAATCTTCTCACGCGTTTTCAAATCCTAATCCTTTCCGCTGCGACTTCATTGCCGGAAATAACGCGATCAGTCTCCGAACCAGGCCCACCAAGGCAGCTTCCAATCCCCGTCGTCGGTTTTCGTGCACTTCTAACTTGGCGGAGTATGCCCAGACTACCTCCGCCGTTTATGGATTCCTCCTCCTCAGCGGTGGCTTCTTTGCCTATACTAGGACAGGAAGCAAAGGGTCACTTATTGGAGGTCTTTCAGGAGCAGCTGTAATGGCCACTGCTTATTATTTGATGCAAAAACCAGAGACTGAAGCTCTTGGTGATGCCCTTGGCTTTGGGTCGGCATTCCTTTTTGCTTCTGTATTTGGAATACGATTAGCAGCTACTCGGAAATTTGCTCCTGCAGGCCCTCTCTTGGCTCTTTCCCTAAGTGCACTGGCTGTGTTTATAACAGCATACCTTCAAGATAGTGTCACTAATCTTTAG

Protein Analysis

212

Amino Acids

22.65

Weight (kDa)

9.87

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 107 - 176 2.9e-11 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015850)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33265
fragaria_vesca FvH4_5g10080 FvH4_5g10080
malus_domestica MD06G1128100.v1.1
prunus_persica Prupe.5G137900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0188191
rosa_laevigata RLG00000004720
rosa_multiflora Rmu_sc0004001.1_g000016 Rmu_sc0015196.1_g000001
rosa_roxburghii Rroxscaffold_3G00266680
rosa_rugosa Rorug06G0489000
rosa_samantha Rh7AG093300 Rh7BG094800 Rh7CG094600 Rh7DG095200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AccII CGCG 2 cut(s) 173, 224
AciI CCGC 4 cut(s) 196, 299, 321, 348
AcoI YGGCCR 2 cut(s) 99, 423
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 3 cut(s) 273, 369, 565
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 180, 614
AjnI CCWGG 2 cut(s) 116, 239
AluBI AGCT 5 cut(s) 79, 257, 416, 464, 533
AluI AGCT 5 cut(s) 79, 257, 416, 464, 533
Alw21I GWGCWC 2 cut(s) 287, 586
Alw26I GTCTC 2 cut(s) 236, 449
Alw44I GTGCAC 2 cut(s) 283, 582
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 4 cut(s) 99, 242, 423, 556
ApaLI GTGCAC 2 cut(s) 283, 582
ApeKI GCWGC 4 cut(s) 198, 254, 413, 530
ApoI RAATTY 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 243, 557
AsuHPI GGTGA 1 cut(s) 482
BaeGI GKGCMC 2 cut(s) 287, 586
BalI TGGCCA 1 cut(s) 425
Bbv12I GWGCWC 2 cut(s) 287, 586
BbvCI CCTCAGC 1 cut(s) 344
BbvI GCAGC 4 cut(s) 185, 266, 425, 542
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 2 cut(s) 118, 241
BcoDI GTCTC 2 cut(s) 236, 449
BfaI CTAG 2 cut(s) 32, 369
BfmI CTRYAG 1 cut(s) 552
BisI GCNGC 4 cut(s) 199, 255, 414, 531
BlsI GCNGC 4 cut(s) 200, 256, 415, 532
Bme1390I CCNGG 2 cut(s) 118, 241
BmgT120I GGNCC 2 cut(s) 243, 557
BmrFI CCNGG 2 cut(s) 118, 241
BmsI GCATC 2 cut(s) 432, 463
BpmI CTGGAG 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 117, 249, 478
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 369, 565
Bse1I ACTGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 2 cut(s) 118, 241
BseDI CCNNGG 3 cut(s) 117, 249, 478
BseLI CCNNNNNNNGG 3 cut(s) 273, 369, 565
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 121, 358
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 2 cut(s) 329, 332
BseSI GKGCMC 2 cut(s) 287, 586
BseXI GCAGC 4 cut(s) 185, 266, 425, 542
Bsh1236I CGCG 2 cut(s) 173, 224
BshFI GGCC 4 cut(s) 101, 244, 425, 558
BsiHKAI GWGCWC 2 cut(s) 287, 586
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 273, 369, 565
BsmAI GTCTC 2 cut(s) 236, 449
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 4 cut(s) 101, 244, 425, 558
Bsp1286I GDGCHC 2 cut(s) 287, 586
Bsp143I GATC 2 cut(s) 3, 225
BspACI CCGC 4 cut(s) 196, 299, 321, 348
BspANI GGCC 4 cut(s) 101, 244, 425, 558
BspCNI CTCAG 2 cut(s) 120, 357
BspFNI CGCG 2 cut(s) 173, 224
BspMAI CTGCAG 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 3 cut(s) 117, 249, 478
BssMI GATC 2 cut(s) 3, 225
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 2 cut(s) 249, 478
Bst2UI CCWGG 2 cut(s) 118, 241
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 3 cut(s) 107, 344, 578
BstENI CCTNNNNNAGG 1 cut(s) 367
BstFNI CGCG 2 cut(s) 173, 224
BstKTI GATC 2 cut(s) 6, 228
BstMAI GTCTC 2 cut(s) 236, 449
BstMBI GATC 2 cut(s) 3, 225
BstMWI GCNNNNNNNGC 3 cut(s) 92, 305, 422
BstNI CCWGG 2 cut(s) 118, 241
BstSCI CCNGG 2 cut(s) 116, 239
BstSFI CTRYAG 1 cut(s) 552
BstSLI GKGCMC 2 cut(s) 287, 586
BstUI CGCG 2 cut(s) 173, 224
BstV1I GCAGC 4 cut(s) 185, 266, 425, 542
BsuRI GGCC 4 cut(s) 101, 244, 425, 558
BtgZI GCGATG 1 cut(s) 101
BtsI GCAGTG 2 cut(s) 81, 426
BtsIMutI CAGTG 3 cut(s) 81, 426, 584
Cac8I GCNNGC 1 cut(s) 556
CaiI CAGNNNCTG 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 243, 557
CseI GACGC 1 cut(s) 84
DdeI CTNAG 3 cut(s) 107, 344, 578
DpnI GATC 2 cut(s) 5, 227
DpnII GATC 2 cut(s) 3, 225
EaeI YGGCCR 2 cut(s) 99, 423
EciI GGCGGA 2 cut(s) 310, 314
Eco130I CCWWGG 2 cut(s) 249, 478
Eco57I CTGAAG 1 cut(s) 480
EcoNI CCTNNNNNAGG 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 116, 239
EcoT14I CCWWGG 2 cut(s) 249, 478
ErhI CCWWGG 2 cut(s) 249, 478
FaiI YATR 6 cut(s) 56, 306, 330, 366, 599, 607
FalI AAGNNNNNCTT 2 cut(s) 375, 407
Fnu4HI GCNGC 4 cut(s) 199, 255, 414, 531
Fsp4HI GCNGC 4 cut(s) 199, 255, 414, 531
FspBI CTAG 2 cut(s) 32, 369
GluI GCNGC 4 cut(s) 199, 255, 414, 531
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 4 cut(s) 101, 244, 425, 558
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 95
HinfI GANTC 1 cut(s) 333
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 2 cut(s) 285, 584
Hpy188I TCNGA 2 cut(s) 236, 540
Hpy188III TCNNGA 4 cut(s) 32, 73, 408, 614
Hpy8I GTNNAC 2 cut(s) 285, 584
Hpy99I CGWCG 3 cut(s) 100, 273, 276
HpyAV CCTTC 1 cut(s) 620
HpyCH4V TGCA 5 cut(s) 27, 285, 445, 554, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 305, 422
HpyF3I CTNAG 3 cut(s) 107, 344, 578
Hsp92I GRCGYC 1 cut(s) 95
Kzo9I GATC 2 cut(s) 3, 225
LmnI GCTCC 2 cut(s) 410, 553
Lsp1109I GCAGC 4 cut(s) 185, 266, 425, 542
LweI GCATC 2 cut(s) 432, 463
MaeI CTAG 2 cut(s) 32, 369
MaeIII GTNAC 2 cut(s) 387, 622
MalI GATC 2 cut(s) 5, 227
MboI GATC 2 cut(s) 3, 225
MboII GAAGA 1 cut(s) 156
MhlI GDGCHC 2 cut(s) 287, 586
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 2 cut(s) 16, 542
MluI ACGCGT 1 cut(s) 171
MluNI TGGCCA 1 cut(s) 425
MnlI CCTC 7 cut(s) 17, 328, 347, 350, 353, 392, 570
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 425
MspA1I CMGCKG 3 cut(s) 198, 348, 416
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 118, 241
Mva1269I GAATGC 1 cut(s) 494
MvaI CCWGG 2 cut(s) 118, 241
MvnI CGCG 2 cut(s) 173, 224
MwoI GCNNNNNNNGC 3 cut(s) 92, 305, 422
NdeII GATC 2 cut(s) 3, 225
NmuCI GTSAC 2 cut(s) 387, 622
PctI GAATGC 1 cut(s) 494
PfeI GAWTC 1 cut(s) 333
PkrI GCNGC 4 cut(s) 200, 256, 415, 532
PsiI TTATAA 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 116, 239
PspGI CCWGG 2 cut(s) 116, 239
PspPI GGNCC 2 cut(s) 243, 557
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 4 cut(s) 199, 255, 414, 531
Sau3AI GATC 2 cut(s) 3, 225
Sau96I GGNCC 2 cut(s) 243, 557
SbfI CCTGCAGG 1 cut(s) 556
ScrFI CCNGG 2 cut(s) 118, 241
SdaI CCTGCAGG 1 cut(s) 556
SduI GDGCHC 2 cut(s) 287, 586
SetI ASST 8 cut(s) 81, 259, 320, 403, 418, 466, 535, 612
SfaNI GCATC 2 cut(s) 432, 463
SfcI CTRYAG 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse8387I CCTGCAGG 1 cut(s) 556
Sse9I AATT 2 cut(s) 16, 542
SsiI CCGC 4 cut(s) 196, 299, 321, 348
SspMI CTAG 2 cut(s) 32, 369
StyD4I CCNGG 2 cut(s) 116, 239
StyI CCWWGG 2 cut(s) 249, 478
TasI AATT 2 cut(s) 16, 542
TfiI GAWTC 1 cut(s) 333
TscAI CASTG 3 cut(s) 88, 433, 591
TseFI GTSAC 2 cut(s) 387, 622
TseI GCWGC 4 cut(s) 198, 254, 413, 530
Tsp45I GTSAC 2 cut(s) 387, 622
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 3 cut(s) 88, 433, 591
VneI GTGCAC 2 cut(s) 283, 582
XagI CCTNNNNNAGG 1 cut(s) 367
XapI RAATTY 1 cut(s) 542
XbaI TCTAGA 1 cut(s) 31
XspI CTAG 2 cut(s) 32, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.