Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004001.1

Orthogroup ID

OG0015850

Physical Location & Seq

Genomic Coordinates Forward (+)

34076 .. 34552

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004001.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgatggcgtcggccactttcaatttctccagggtttgtttgtaccagcaccattccacagttcccagatccaaatcctctgcattagtttcaaattctaaaccttttcgctgcgattttatcgccggaaatgaaaaactgatactagataatgcgactagtctcagaaccaaagccaagttagctcccaatccccgtcgtcggttttcgtgcacttctaatctggcggagtatgcccagactacctctgccgtctatggattcctcctcctcagcggtggcttcttcgcctatactaggacaggaagcaaagggtcacttctaggaggcgtttctggggcagctgtaatggccactgtaagaaactatatcctttgctcttgttttgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009611 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

130

Amino Acids

14.01

Weight (kDa)

9.98

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33265
fragaria_vesca	FvH4_5g10080 FvH4_5g10080
malus_domestica	MD06G1128100.v1.1
prunus_persica	Prupe.5G137900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188191
rosa_laevigata	RLG00000004720
rosa_multiflora	Rmu_sc0004001.1_g000016 Rmu_sc0015196.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266680
rosa_rugosa	Rorug06G0489000
rosa_samantha	Rh7AG093300 Rh7BG094800 Rh7CG094600 Rh7DG095200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	227, 276
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	2 cut(s)	12, 351
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	201, 297
AgsI	TTSAA	2 cut(s)	22, 93
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	2 cut(s)	185, 344
AluI	AGCT	2 cut(s)	185, 344
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	12, 351
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	111, 341
ApoI	RAATTY	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	98, 353
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	4 cut(s)	146, 159, 297, 323
BisI	GCNGC	2 cut(s)	112, 342
BlsI	GCNGC	2 cut(s)	113, 343
Bme1390I	CCNGG	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 297
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	201, 297
BseMII	CTCAG	2 cut(s)	178, 286
BseRI	GAGGAG	2 cut(s)	257, 260
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	98, 353
BshFI	GGCC	2 cut(s)	14, 353
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	201, 297
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	14, 353
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	2 cut(s)	227, 276
BspANI	GGCC	2 cut(s)	14, 353
BspCNI	CTCAG	2 cut(s)	177, 285
BspPI	GGATC	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	68
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	61, 358
BstACI	GRCGYC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	164, 272
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 233, 350
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	98, 353
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	14, 353
BtsIMutI	CAGTG	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	43
CviJI	RGCY	6 cut(s)	14, 176, 185, 282, 344, 353
CviKI_1	RGCY	6 cut(s)	14, 176, 185, 282, 344, 353
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	164, 272
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EaeI	YGGCCR	2 cut(s)	12, 351
EciI	GGCGGA	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	29
FaiI	YATR	4 cut(s)	234, 258, 294, 369
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
Fnu4HI	GCNGC	2 cut(s)	112, 342
Fsp4HI	GCNGC	2 cut(s)	112, 342
FspBI	CTAG	4 cut(s)	146, 159, 297, 323
GluI	GCNGC	2 cut(s)	112, 342
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	14, 353
HapII	CCGG	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	3 cut(s)	13, 201, 204
HpyCH4III	ACNGT	2 cut(s)	61, 358
HpyCH4V	TGCA	2 cut(s)	83, 213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 233, 350
HpyF3I	CTNAG	2 cut(s)	164, 272
Hsp92I	GRCGYC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	9 cut(s)	16, 43, 59, 79, 139, 209, 251, 288, 321
Lsp1109I	GCAGC	2 cut(s)	98, 353
MaeI	CTAG	4 cut(s)	146, 159, 297, 323
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	2 cut(s)	22, 94
MluNI	TGGCCA	1 cut(s)	353
MnlI	CCTC	6 cut(s)	88, 256, 275, 278, 281, 320
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	2 cut(s)	276, 344
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	182, 233, 350
NdeII	GATC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	113, 343
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SatI	GCNGC	2 cut(s)	112, 342
Sau3AI	GATC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	4 cut(s)	106, 187, 248, 346
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	2 cut(s)	22, 94
SsiI	CCGC	2 cut(s)	227, 276
SspMI	CTAG	4 cut(s)	146, 159, 297, 323
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	61, 358
TasI	AATT	2 cut(s)	22, 94
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	2 cut(s)	111, 341
Tsp45I	GTSAC	1 cut(s)	315
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	361
VneI	GTGCAC	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	4 cut(s)	146, 159, 297, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.