AT1G33480
ERF Family

RING U-box superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013126
Physical Location & Seq
Reverse (-)
12148515 .. 12150617
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33480.1

Sequence Viewer

Length: 786 bp
ATGTCTTATAGTAATTCAAACCCGGAAAATTATTCAGCTGCAACGAGCTCGCCGGAGCTTAAACTATATCAAGCATTTATCTTTTCTGTTCCAATTTGTTTCACATTTATTATTCTCTTCTTGTTTTACTTGATCTACCTCCGTCGTAGTAGCTCTGATTTGTCTTCTCTTGGAATGCGAACTACTTTCATCCCCGGGAACTCTCTCTCCACGATTGAATTAGGATTGAGCAAAGAGCTGAGAGAGATGCTTCCCATTGTTGTCTTTAAAGAGAGCTTCACCGTAATGGATTCACAATGTTCAGTGTGCCTTGGGGACTATCAACCAAATGACAAGCTTCAACAGATCCCGGTATGTAAACACACTTTTCACATGGACTGCATTGATCTTTGGCTCACATCACATACCACTTGCCCTCTTTGCCGCCTCGCTCTAATCCCGAGTCGTTCCCGTCAAAGCCAAGATGATCCTGTTCCGAGTCTCGTAAGCCCTGATGAAGAAGTGTCGAGTCAACCAGAATCTGAGCCAGTAAACCACAGAGTAGTGTCGACTCAACCAGAATCTGAGCCAGTAAACCACAGTGGAGTCTCGAGTCAACCAGAATCTCAGCCAGTAGTAAACCACAGAGGAGTCTCGAGTCAACCGGAGTCTCAGCCAGTAAACCACATTAACGATGGCCATGAGCAGCAATGTGATCAAGATGTAGAGGGCTTTAAGGAAATGGAAGAGGACGAACGAAACAACATCGGGACATCGAGTGCTTGTTGTAGTTGTAGAACTGGTTAA

Protein Analysis

261

Amino Acids

29.12

Weight (kDa)

4.78

Isoelectric Point (pI)

78.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 99 - 142 3.2e-13 Ring finger domain
zf-RING_11 PF17123 99 - 128 6.4e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 99 - 141 2.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 100 - 141 5.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 109 - 142 4.4e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33480 AT4G10150 AT4G10160
fragaria_vesca FvH4_2g00300
malus_domestica MD05G1006000.v1.1
prunus_persica Prupe.8G002900_v2.0.a1
pyrus_communis pycom05g00120
rosa_chinensis RchiOBHm_Chr6g0249581
rosa_laevigata RLG00000015560
rosa_multiflora Rmu_sc0006936.1_g000008 Rmu_sc0013555.1_g000005
rosa_roxburghii Rroxscaffold_7G00217530
rosa_rugosa Rorug05G0493800
rosa_samantha Rh6AG003600 Rh6BG006600 Rh6CG002700 Rh6DG002500
rosa_wichuraiana Rw6G000400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 548
AciI CCGC 1 cut(s) 424
AclWI GGATC 2 cut(s) 340, 461
AcoI YGGCCR 1 cut(s) 676
AgsI TTSAA 3 cut(s) 18, 218, 341
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 7 cut(s) 38, 48, 58, 153, 238, 276, 337
AluI AGCT 7 cut(s) 38, 48, 58, 153, 238, 276, 337
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 4 cut(s) 485, 592, 637, 654
AlwI GGATC 2 cut(s) 340, 461
AlwNI CAGNNNCTG 2 cut(s) 521, 563
Ama87I CYCGRG 4 cut(s) 194, 439, 589, 634
AoxI GGCC 1 cut(s) 676
ApeKI GCWGC 2 cut(s) 38, 685
AsuC2I CCSGG 4 cut(s) 23, 195, 196, 350
AsuHPI GGTGA 1 cut(s) 271
AvaI CYCGRG 4 cut(s) 194, 439, 589, 634
BalI TGGCCA 1 cut(s) 678
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 25, 697
BccI CCATC 1 cut(s) 668
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 4 cut(s) 23, 195, 196, 350
BcoDI GTCTC 4 cut(s) 485, 592, 637, 654
BisI GCNGC 3 cut(s) 39, 424, 686
BlsI GCNGC 3 cut(s) 40, 425, 687
Bme1390I CCNGG 4 cut(s) 23, 195, 196, 350
BmeT110I CYCGRG 4 cut(s) 194, 439, 589, 634
BmrFI CCNGG 4 cut(s) 23, 195, 196, 350
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 156
BpuMI CCSGG 4 cut(s) 23, 195, 196, 350
BsaJI CCNNGG 3 cut(s) 193, 194, 310
BsaWI WCCGGW 1 cut(s) 643
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bse1I ACTGG 5 cut(s) 527, 569, 611, 656, 784
Bse3DI GCAATG 1 cut(s) 695
BseDI CCNNGG 3 cut(s) 193, 194, 310
BseGI GGATG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 695
BseMII CTCAG 5 cut(s) 230, 513, 555, 620, 665
BseNI ACTGG 5 cut(s) 527, 569, 611, 656, 784
BseRI GAGGAG 1 cut(s) 642
BseXI GCAGC 2 cut(s) 25, 697
BshFI GGCC 1 cut(s) 678
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 4 cut(s) 194, 439, 589, 634
BsiSI CCGG 5 cut(s) 23, 53, 195, 350, 644
BslFI GGGAC 2 cut(s) 329, 763
BsmAI GTCTC 4 cut(s) 485, 592, 637, 654
BsmFI GGGAC 2 cut(s) 329, 763
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 1 cut(s) 678
BsoBI CYCGRG 4 cut(s) 194, 439, 589, 634
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 5 cut(s) 132, 345, 385, 466, 694
BspACI CCGC 1 cut(s) 424
BspANI GGCC 1 cut(s) 678
BspCNI CTCAG 5 cut(s) 231, 514, 556, 619, 664
BspPI GGATC 2 cut(s) 340, 461
BsrDI GCAATG 1 cut(s) 695
BsrI ACTGG 5 cut(s) 527, 569, 611, 656, 784
BssECI CCNNGG 3 cut(s) 193, 194, 310
BssMI GATC 5 cut(s) 132, 345, 385, 466, 694
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 283, 581
Bst6I CTCTTC 2 cut(s) 122, 720
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 5 cut(s) 239, 522, 564, 606, 651
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 5 cut(s) 135, 348, 388, 469, 697
BstMAI GTCTC 4 cut(s) 485, 592, 637, 654
BstMBI GATC 5 cut(s) 132, 345, 385, 466, 694
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstSCI CCNGG 4 cut(s) 21, 193, 194, 348
BstV1I GCAGC 2 cut(s) 25, 697
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 1 cut(s) 678
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 309, 586
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 2 cut(s) 521, 563
Cfr9I CCCGGG 1 cut(s) 194
CviAII CATG 2 cut(s) 373, 680
DdeI CTNAG 5 cut(s) 239, 522, 564, 606, 651
DpnI GATC 5 cut(s) 134, 347, 387, 468, 696
DpnII GATC 5 cut(s) 132, 345, 385, 466, 694
DraI TTTAAA 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 2 cut(s) 122, 720
EarI CTCTTC 2 cut(s) 122, 720
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 48
Eco88I CYCGRG 4 cut(s) 194, 439, 589, 634
EcoICRI GAGCTC 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 2 cut(s) 376, 683
FaiI YATR 6 cut(s) 9, 67, 355, 374, 405, 681
FaqI GGGAC 2 cut(s) 329, 763
FatI CATG 2 cut(s) 372, 679
FbaI TGATCA 1 cut(s) 694
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 3 cut(s) 39, 424, 686
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 3 cut(s) 39, 424, 686
GluI GCNGC 3 cut(s) 39, 424, 686
HaeIII GGCC 1 cut(s) 678
HapII CCGG 5 cut(s) 23, 53, 195, 350, 644
Hin1II CATG 2 cut(s) 376, 683
HincII GTYRAC 4 cut(s) 512, 549, 596, 641
HindII GTYRAC 4 cut(s) 512, 549, 596, 641
HindIII AAGCTT 1 cut(s) 335
HpaII CCGG 5 cut(s) 23, 53, 195, 350, 644
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 9 cut(s) 359, 512, 532, 549, 574, 596, 619, 641, 661
Hpy188I TCNGA 4 cut(s) 157, 477, 523, 565
Hpy188III TCNNGA 5 cut(s) 439, 589, 634, 698, 748
Hpy8I GTNNAC 9 cut(s) 359, 512, 532, 549, 574, 596, 619, 641, 661
Hpy99I CGWCG 1 cut(s) 147
HpyCH4III ACNGT 2 cut(s) 283, 581
HpyCH4V TGCA 2 cut(s) 41, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 5 cut(s) 239, 522, 564, 606, 651
Hsp92II CATG 2 cut(s) 376, 683
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 5 cut(s) 132, 345, 385, 466, 694
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 2 cut(s) 25, 697
LweI GCATC 1 cut(s) 237
MalI GATC 5 cut(s) 134, 347, 387, 468, 696
MboI GATC 5 cut(s) 132, 345, 385, 466, 694
MboII GAAGA 4 cut(s) 109, 156, 509, 737
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 50
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 4 cut(s) 13, 28, 93, 218
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 9 cut(s) 451, 487, 517, 544, 594, 601, 639, 646, 656
MnlI CCTC 6 cut(s) 149, 426, 437, 620, 700, 721
Mox20I TGGCCA 1 cut(s) 678
MscI TGGCCA 1 cut(s) 678
MseI TTAA 5 cut(s) 60, 267, 669, 714, 784
MslI CAYNNNNRTG 1 cut(s) 284
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 5 cut(s) 23, 53, 195, 350, 644
MspR9I CCNGG 4 cut(s) 23, 195, 196, 350
Mva1269I GAATGC 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 420
NciI CCSGG 4 cut(s) 23, 195, 196, 350
NdeII GATC 5 cut(s) 132, 345, 385, 466, 694
NlaIII CATG 2 cut(s) 376, 683
PaeR7I CTCGAG 2 cut(s) 589, 634
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 4 cut(s) 290, 518, 560, 602
PkrI GCNGC 3 cut(s) 40, 425, 687
PleI GAGTC 9 cut(s) 450, 486, 516, 544, 593, 600, 638, 645, 655
PpsI GAGTC 9 cut(s) 450, 486, 516, 544, 593, 600, 638, 645, 655
Psp124BI GAGCTC 1 cut(s) 50
PstNI CAGNNNCTG 2 cut(s) 521, 563
PsuI RGATCY 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 547
SaqAI TTAA 5 cut(s) 60, 267, 669, 714, 784
SatI GCNGC 3 cut(s) 39, 424, 686
Sau3AI GATC 5 cut(s) 132, 345, 385, 466, 694
SchI GAGTC 9 cut(s) 451, 487, 517, 544, 594, 601, 639, 646, 656
ScrFI CCNGG 4 cut(s) 23, 195, 196, 350
SduI GDGCHC 1 cut(s) 50
SetI ASST 8 cut(s) 40, 50, 60, 141, 155, 240, 278, 339
SfaNI GCATC 1 cut(s) 237
Sfr274I CTCGAG 2 cut(s) 589, 634
SlaI CTCGAG 2 cut(s) 589, 634
SmaI CCCGGG 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 589, 634
SmoI CTYRAG 2 cut(s) 589, 634
Sse9I AATT 4 cut(s) 13, 28, 93, 218
SsiI CCGC 1 cut(s) 424
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 4 cut(s) 21, 193, 194, 348
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 283, 581
TaqI TCGA 5 cut(s) 506, 548, 590, 635, 755
TasI AATT 4 cut(s) 13, 28, 93, 218
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 4 cut(s) 290, 518, 560, 602
Tru1I TTAA 5 cut(s) 60, 267, 669, 714, 784
Tru9I TTAA 5 cut(s) 60, 267, 669, 714, 784
TscAI CASTG 2 cut(s) 309, 586
TseI GCWGC 2 cut(s) 38, 685
TspDTI ATGAA 2 cut(s) 178, 510
TspGWI ACGGA 1 cut(s) 131
TspMI CCCGGG 1 cut(s) 194
TspRI CASTG 2 cut(s) 309, 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XhoI CTCGAG 2 cut(s) 589, 634
XmaI CCCGGG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.