Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013126

Physical Location & Seq

Genomic Coordinates Reverse (-)

250288 .. 254099

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCTTATAATCATGTATATCCGAGATGTTGCTTAAACTCTTCAGACTCTTCTAGTAAGTCAAAAGAAAGTCCTTCAGGTCAATTCAAGCTTTACCAGTTCTTCGTGTTCTGTGTACCAATCTTCTTCACTTTCATCCTCCTCTTCGTCTTCTACTTGTTCTATCTTCGCCCTCGACGGGTCAATTGGTCATCTCTTAGAATGACAACCTCTCCACAGATTAACAATGACATTGCCACTGTTGAATTGGGCTTGAAAAAAGAACTGAGAGAGATGCTACCCATTATTGTATATAAGGAGAGCTTCTCCGTCAGAGATACACAATGCTCAGTATGCCTGGGCGACTATCAAGCAGAGGATAGGCTTCAACAAATACCAGCCTGTGCCCATACATTTCATATTGATTGCATTGATAGCTGGCTTTCCACCCACAGCACCTGTCCACTCTGCCGCCTATCCCTCCTTTCGTCTCATAAATCTCAAAATGAATCGCCTGATGTACCGGTGGAGTCGAGTCATGAATATTCTGTTGCAGAGAATAATTTTGTAACACCCCTTCCACAGATGCCTCAAGCGTGTGAAGAAACAGAAGCTACAGAGTCCGGGTTGAGGAATAAGGAACCTAGAACTGCCCTACACAGTTCCGAAGAAGATCCAAGAAGTTCTCAATGGGTTGATTGTAAGCGAGAATTGAGGGATGTAGGAAATGCAACTGAGTTGCATGAGCATACTCGTGGATCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

250

Amino Acids

28.49

Weight (kDa)

5.72

Isoelectric Point (pI)

64.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33480 AT4G10150 AT4G10160
fragaria_vesca	FvH4_2g00300
malus_domestica	MD05G1006000.v1.1
prunus_persica	Prupe.8G002900_v2.0.a1
pyrus_communis	pycom05g00120
rosa_chinensis	RchiOBHm_Chr6g0249581
rosa_laevigata	RLG00000015560
rosa_multiflora	Rmu_sc0006936.1_g000008 Rmu_sc0013555.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217530
rosa_rugosa	Rorug05G0493800
rosa_samantha	Rh6AG003600 Rh6BG006600 Rh6CG002700 Rh6DG002500
rosa_wichuraiana	Rw6G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	2 cut(s)	647, 745
AcuI	CTGAAG	2 cut(s)	27, 60
AfaI	GTAC	2 cut(s)	117, 501
AfiI	CCNNNNNNNGG	2 cut(s)	178, 609
AgeI	ACCGGT	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	88, 245, 256, 368
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	4 cut(s)	91, 303, 417, 593
AluI	AGCT	4 cut(s)	91, 303, 417, 593
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	647, 745
AlwNI	CAGNNNCTG	1 cut(s)	438
AsiGI	ACCGGT	1 cut(s)	502
AsuC2I	CCSGG	1 cut(s)	604
BaeGI	GKGCMC	1 cut(s)	388
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	54, 624
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	338, 604
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	2 cut(s)	338, 604
BmsI	GCATC	2 cut(s)	264, 555
BpiI	GAAGAC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	604
BsaJI	CCNNGG	1 cut(s)	337
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 609
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	135, 703
BseLI	CCNNNNNNNGG	2 cut(s)	178, 609
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	3 cut(s)	257, 342, 705
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	388
BshTI	ACCGGT	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	503, 603
BslI	CCNNNNNNNGG	2 cut(s)	178, 609
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	652, 737
BspACI	CCGC	1 cut(s)	451
BspCNI	CTCAG	3 cut(s)	258, 341, 706
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	621
BspPI	GGATC	2 cut(s)	647, 745
BsrDI	GCAATG	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	652, 737
BssSI	CACGAG	1 cut(s)	732
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	241, 641
Bst6I	CTCTTC	3 cut(s)	46, 55, 149
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	4 cut(s)	197, 266, 328, 714
BstF5I	GGATG	2 cut(s)	135, 703
BstKTI	GATC	2 cut(s)	655, 740
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	2 cut(s)	652, 737
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 414
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	336, 602
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	652, 737
BstYI	RGATCY	2 cut(s)	652, 737
BtsCI	GGATG	2 cut(s)	135, 703
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	419
CaiI	CAGNNNCTG	1 cut(s)	438
CciI	TCATGA	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	502
Csp6I	GTAC	2 cut(s)	116, 500
CspAI	ACCGGT	1 cut(s)	502
CviAII	CATG	3 cut(s)	14, 518, 722
CviJI	RGCY	8 cut(s)	91, 252, 303, 364, 380, 417, 421, 593
CviKI_1	RGCY	8 cut(s)	91, 252, 303, 364, 380, 417, 421, 593
CviQI	GTAC	2 cut(s)	116, 500
DdeI	CTNAG	4 cut(s)	197, 266, 328, 714
DpnI	GATC	2 cut(s)	654, 739
DpnII	GATC	2 cut(s)	652, 737
Eam1104I	CTCTTC	3 cut(s)	46, 55, 149
EarI	CTCTTC	3 cut(s)	46, 55, 149
Eco57I	CTGAAG	2 cut(s)	27, 60
EcoRII	CCWGG	1 cut(s)	336
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	3 cut(s)	17, 521, 725
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	3 cut(s)	13, 517, 721
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	2 cut(s)	122, 710
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	2 cut(s)	54, 624
GluI	GCNGC	1 cut(s)	451
HapII	CCGG	2 cut(s)	503, 603
Hin1II	CATG	3 cut(s)	17, 521, 725
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	5 cut(s)	47, 488, 509, 514, 599
HpaII	CCGG	2 cut(s)	503, 603
Hpy166II	GTNNAC	2 cut(s)	116, 443
Hpy188I	TCNGA	4 cut(s)	24, 46, 314, 646
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	2 cut(s)	116, 443
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	2 cut(s)	84, 566
HpyCH4III	ACNGT	2 cut(s)	241, 641
HpyCH4V	TGCA	4 cut(s)	408, 533, 710, 721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 414
HpyF3I	CTNAG	4 cut(s)	197, 266, 328, 714
Hsp92II	CATG	3 cut(s)	17, 521, 725
Kzo9I	GATC	2 cut(s)	652, 737
LweI	GCATC	2 cut(s)	264, 555
MaeI	CTAG	2 cut(s)	54, 624
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	654, 739
MboI	GATC	2 cut(s)	652, 737
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	2 cut(s)	652, 737
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	5 cut(s)	83, 184, 245, 541, 689
MlyI	GAGTC	4 cut(s)	41, 518, 523, 608
MnlI	CCTC	9 cut(s)	149, 152, 183, 220, 349, 470, 579, 603, 687
MseI	TTAA	2 cut(s)	35, 222
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	2 cut(s)	503, 603
MspR9I	CCNGG	2 cut(s)	338, 604
MunI	CAATTG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	333, 414
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	2 cut(s)	652, 737
NlaIII	CATG	3 cut(s)	17, 521, 725
NlaIV	GGNNCC	1 cut(s)	621
PagI	TCATGA	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	488
PinAI	ACCGGT	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	4 cut(s)	41, 517, 522, 607
PpsI	GAGTC	4 cut(s)	41, 517, 522, 607
PsiI	TTATAA	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	438
PsuI	RGATCY	2 cut(s)	652, 737
RsaI	GTAC	2 cut(s)	117, 501
RsaNI	GTAC	2 cut(s)	116, 500
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	35, 222
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	2 cut(s)	652, 737
SchI	GAGTC	4 cut(s)	41, 518, 523, 608
ScrFI	CCNGG	2 cut(s)	338, 604
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	8 cut(s)	82, 93, 212, 305, 419, 440, 595, 625
SfaNI	GCATC	2 cut(s)	264, 555
SfcI	CTRYAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	5 cut(s)	83, 184, 245, 541, 689
SsiI	CCGC	1 cut(s)	451
SspI	AATATT	1 cut(s)	524
SspMI	CTAG	2 cut(s)	54, 624
StyD4I	CCNGG	2 cut(s)	336, 602
TaaI	ACNGT	2 cut(s)	241, 641
TaqI	TCGA	2 cut(s)	175, 512
TasI	AATT	5 cut(s)	83, 184, 245, 541, 689
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	2 cut(s)	35, 222
Tru9I	TTAA	2 cut(s)	35, 222
TscAI	CASTG	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	124, 386, 501, 534
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	2 cut(s)	54, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.