AT4G10160
ERF Family

RING U-box superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013126
Physical Location & Seq
Forward (+)
6335919 .. 6337478
1560 bp
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UTR
Exon/CDS
Intron
AT4G10160.1

Sequence Viewer

Length: 678 bp
ATGTCTTTCATCGACCCAAGAACTTACATTCCATCGAACTCAACTGAATCCCAGATACTGAAATTTACGTTTATCGTCTGTGTGCCAATCTGTGTCATATTAATCGTCCTCCTCGTTCTTTATATCATGCGTCGAAACAGCAATACCAACGTTGATTGGTCTTCTCTTGGTGGCTTCGTGCCCACCAACAATAATCTCTCAACGGCTGAATTAGGACTGAGCAAAGACATAAGAGAGATGCTTCCCATTGTTATCTACAAGGAGAGTTTCACTGTCAACGATACACAATGTTCAGTGTGTCTTGGGGACTACCAAGCAGAAGAGAAACTCCAACAAATGCCATCATGTGGGCACACTTTCCACATGGAATGTATTGATCTATGGCTCACATCGCACACAACATGCCCTCTTTGTCGTCTCTCCCTTATCCCCAAACCGTCCGTAGACCTGTCCCATCAAAGCATAGAGATTGTATCTTCCATAGAAAACACTAACGGAGGAGAAGCTTCAACTCAACCAGATTCCCAGTCAGCAACCGAAGCAATAATTCACATCGATGATGTCGAAGAAGGTAACCGAGATAGTATAGAGGTCGTTAAGGAATCGGAAGAGAATGACAGAAACAGCGTAGGGACATCTGATGGTTGTTGTAGTTGTAGACTTGGTGAAAAAGCGTAG

Protein Analysis

225

Amino Acids

24.87

Weight (kDa)

4.55

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 96 - 139 1.1e-14 Ring finger domain
zf-RING_11 PF17123 96 - 125 9.9e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 96 - 138 4.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 97 - 136 4.7e-07 RING-type zinc-finger
zf-C3HC4 PF00097 97 - 138 3.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 105 - 139 1.3e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33480 AT4G10150 AT4G10160
fragaria_vesca FvH4_2g00300
malus_domestica MD05G1006000.v1.1
prunus_persica Prupe.8G002900_v2.0.a1
pyrus_communis pycom05g00120
rosa_chinensis RchiOBHm_Chr6g0249581
rosa_laevigata RLG00000015560
rosa_multiflora Rmu_sc0006936.1_g000008 Rmu_sc0013555.1_g000005
rosa_roxburghii Rroxscaffold_7G00217530
rosa_rugosa Rorug05G0493800
rosa_samantha Rh6AG003600 Rh6BG006600 Rh6CG002700 Rh6DG002500
rosa_wichuraiana Rw6G000400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 2 cut(s) 444, 658
AclI AACGTT 1 cut(s) 150
AcsI RAATTY 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 1 cut(s) 510
AloI GAACNNNNNNTCC 2 cut(s) 13, 45
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 422
AlwNI CAGNNNCTG 1 cut(s) 58
ApoI RAATTY 1 cut(s) 62
AseI ATTAAT 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 677
BaeGI GKGCMC 2 cut(s) 183, 354
BbsI GAAGAC 1 cut(s) 153
BccI CCATC 4 cut(s) 40, 349, 462, 635
BceAI ACGGC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 422
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 555
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 526
BseCI ATCGAT 1 cut(s) 555
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 2 cut(s) 101, 513
BseSI GKGCMC 2 cut(s) 183, 354
BshVI ATCGAT 1 cut(s) 555
BslFI GGGAC 3 cut(s) 320, 436, 646
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 3 cut(s) 320, 436, 646
Bsp1286I GDGCHC 2 cut(s) 183, 354
Bsp143I GATC 1 cut(s) 376
BspCNI CTCAG 1 cut(s) 210
BspDI ATCGAT 1 cut(s) 555
BsrI ACTGG 1 cut(s) 526
BssMI GATC 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 274, 438
Bst6I CTCTTC 2 cut(s) 315, 603
BstDEI CTNAG 1 cut(s) 218
BstEII GGTNACC 1 cut(s) 572
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 2 cut(s) 391, 539
BstNSI RCATGY 1 cut(s) 405
BstPI GGTNACC 1 cut(s) 572
BstSLI GKGCMC 2 cut(s) 183, 354
BstV2I GAAGAC 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 555
BsuTUI ATCGAT 1 cut(s) 555
BtgZI GCGATG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 270, 300
CaiI CAGNNNCTG 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 555
CseI GACGC 1 cut(s) 119
CviAII CATG 4 cut(s) 127, 345, 364, 402
CviJI RGCY 4 cut(s) 174, 206, 385, 506
CviKI_1 RGCY 4 cut(s) 174, 206, 385, 506
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 315, 603
EarI CTCTTC 2 cut(s) 315, 603
Eco91I GGTNACC 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 572
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 4 cut(s) 130, 348, 367, 405
FaqI GGGAC 3 cut(s) 320, 436, 646
FatI CATG 4 cut(s) 126, 344, 363, 401
FblI GTMKAC 2 cut(s) 444, 658
HgaI GACGC 1 cut(s) 119
Hin1II CATG 4 cut(s) 130, 348, 367, 405
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 3 cut(s) 47, 521, 602
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 3 cut(s) 277, 445, 659
Hpy188I TCNGA 2 cut(s) 607, 640
Hpy8I GTNNAC 3 cut(s) 277, 445, 659
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 563
HpyCH4III ACNGT 2 cut(s) 274, 438
HpyCH4IV ACGT 2 cut(s) 68, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 391, 539
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 2 cut(s) 68, 150
Hsp92II CATG 4 cut(s) 130, 348, 367, 405
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 4 cut(s) 65, 461, 531, 539
LweI GCATC 1 cut(s) 228
MaeII ACGT 2 cut(s) 68, 150
MaeIII GTNAC 1 cut(s) 572
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 5 cut(s) 153, 332, 468, 578, 620
MhlI GDGCHC 2 cut(s) 183, 354
MluCI AATT 3 cut(s) 62, 209, 546
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 5 cut(s) 119, 122, 417, 491, 583
MseI TTAA 2 cut(s) 101, 597
MslI CAYNNNNRTG 1 cut(s) 555
MwoI GCNNNNNNNGC 2 cut(s) 391, 539
NdeII GATC 1 cut(s) 376
NlaIII CATG 4 cut(s) 130, 348, 367, 405
NspI RCATGY 1 cut(s) 405
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 561
PfeI GAWTC 3 cut(s) 47, 521, 602
PflMI CCANNNNNTGG 1 cut(s) 347
PshBI ATTAAT 1 cut(s) 101
Psp1406I AACGTT 1 cut(s) 150
PspEI GGTNACC 1 cut(s) 572
PstNI CAGNNNCTG 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 555
SaqAI TTAA 2 cut(s) 101, 597
Sau3AI GATC 1 cut(s) 376
SduI GDGCHC 2 cut(s) 183, 354
SetI ASST 6 cut(s) 71, 153, 450, 508, 574, 594
SfaNI GCATC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 555
Sse9I AATT 3 cut(s) 62, 209, 546
TaaI ACNGT 2 cut(s) 274, 438
TaiI ACGT 2 cut(s) 71, 153
TaqI TCGA 5 cut(s) 12, 35, 133, 555, 564
TasI AATT 3 cut(s) 62, 209, 546
TfiI GAWTC 3 cut(s) 47, 521, 602
Tru1I TTAA 2 cut(s) 101, 597
Tru9I TTAA 2 cut(s) 101, 597
TscAI CASTG 2 cut(s) 277, 300
TspGWI ACGGA 2 cut(s) 430, 510
TspRI CASTG 2 cut(s) 277, 300
Van91I CCANNNNNTGG 1 cut(s) 347
VspI ATTAAT 1 cut(s) 101
XapI RAATTY 1 cut(s) 62
XceI RCATGY 1 cut(s) 405
XmiI GTMKAC 2 cut(s) 444, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.