Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013126

Physical Location & Seq

Genomic Coordinates Reverse (-)

154212 .. 157248

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00120.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTACCAATTCTTGGTGTTTTGCGTCCCCATCCTGTTCACTTTTATCCTCCTTTTCGTCTTCTACTTGTTCTATTTTCGCCCTCGACGCCTCAATTGGTCCTCCCGCGGAACGACAACATCTCTTCCGACTCCAGGGAATCACACTCACATATTTGCCACTGTTGAGTTGGGGTTGAAGAAAGAGCTCAGGGAGATGCTGCCCATTATTGTATATAAGGAGAGCTTCTCCGTCAGAGATACACAATGCTCAGTATGCCTGGGTGACTATGTAGCGGAGGATAGACTTCAACAGATACCATCCTGTGGCCATACATTTCACATTGATTGCATTGACAGCTGGCTTTCTACCCACAGCACTTGTCCACTGTGCCGCTCATCCCTCCTTTCTGCCCATAAATATCAAAATGAATCGCCTGATGTACTAGTGGAACCAAGTCATGAATCTTCTGTTGCGGTGAATAGGAGTGTAACATCTCTTCTACAGATGCCTCAGGCTTGTGAAGAAACAAAAGCTACAGAGTTTTCTGGGTTGAGGAATGGAGAACCAACAAACGCCCAAAACAGTTCCAAAGAAGATGCAAGTTCTGAGTGGGTTGATTGCAAGAGAGGATTGAGGGATGCAGGAAATGCAACTCAAGTGCATCAGCATACTGGTGGATCATCTGATGGACTTGAATTGAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

230

Amino Acids

25.78

Weight (kDa)

6.04

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33480 AT4G10150 AT4G10160
fragaria_vesca	FvH4_2g00300
malus_domestica	MD05G1006000.v1.1
prunus_persica	Prupe.8G002900_v2.0.a1
pyrus_communis	pycom05g00120
rosa_chinensis	RchiOBHm_Chr6g0249581
rosa_laevigata	RLG00000015560
rosa_multiflora	Rmu_sc0006936.1_g000008 Rmu_sc0013555.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217530
rosa_rugosa	Rorug05G0493800
rosa_samantha	Rh6AG003600 Rh6BG006600 Rh6CG002700 Rh6DG002500
rosa_wichuraiana	Rw6G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	13, 305
AccBSI	CCGCTC	1 cut(s)	375
AccII	CGCG	1 cut(s)	108
AciI	CCGC	5 cut(s)	106, 108, 275, 373, 455
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	2 cut(s)	5, 423
AfiI	CCNNNNNNNGG	3 cut(s)	13, 134, 305
AgsI	TTSAA	3 cut(s)	178, 290, 677
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	133, 258
AluBI	AGCT	4 cut(s)	187, 225, 339, 515
AluI	AGCT	4 cut(s)	187, 225, 339, 515
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	667
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	275, 469
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	189
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	3 cut(s)	38, 307, 662
BciT130I	CCWGG	2 cut(s)	135, 260
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	2 cut(s)	482, 516
BisI	GCNGC	2 cut(s)	200, 373
BlsI	GCNGC	2 cut(s)	201, 374
Bme1390I	CCNGG	2 cut(s)	135, 260
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	2 cut(s)	135, 260
BmsI	GCATC	5 cut(s)	186, 477, 568, 610, 652
BpiI	GAAGAC	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	621
BsaHI	GRCGYC	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	106, 134, 259
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 134, 305
Bse1I	ACTGG	1 cut(s)	658
Bse21I	CCTNAGG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	135, 260
BseDI	CCNNGG	3 cut(s)	106, 134, 259
BseGI	GGATG	4 cut(s)	30, 299, 377, 625
BseLI	CCNNNNNNNGG	3 cut(s)	13, 134, 305
BseMII	CTCAG	4 cut(s)	202, 264, 506, 579
BseNI	ACTGG	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	3 cut(s)	13, 134, 305
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	659
BspACI	CCGC	5 cut(s)	106, 108, 275, 373, 455
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	4 cut(s)	201, 263, 505, 580
BspFNI	CGCG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	667
BsrBI	CCGCTC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	658
BssECI	CCNNGG	3 cut(s)	106, 134, 259
BssMI	GATC	1 cut(s)	659
BssNI	GRCGYC	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	135, 260
Bst4CI	ACNGT	3 cut(s)	163, 369, 566
Bst6I	CTCTTC	2 cut(s)	129, 483
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	4 cut(s)	188, 250, 492, 588
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	4 cut(s)	30, 299, 377, 625
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	662
BstMBI	GATC	1 cut(s)	659
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 255, 336, 629
BstNI	CCWGG	2 cut(s)	135, 260
BstSCI	CCNGG	2 cut(s)	133, 258
BstSFI	CTRYAG	2 cut(s)	482, 516
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	4 cut(s)	30, 299, 377, 625
BtsIMutI	CAGTG	2 cut(s)	159, 365
Cac8I	GCNNGC	1 cut(s)	341
CciI	TCATGA	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	99
Cfr42I	CCGCGG	1 cut(s)	109
CseI	GACGC	2 cut(s)	13, 96
Csp6I	GTAC	2 cut(s)	4, 422
CspCI	CAANNNNNGTGG	2 cut(s)	341, 376
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	7 cut(s)	187, 225, 309, 339, 343, 497, 515
CviKI_1	RGCY	7 cut(s)	187, 225, 309, 339, 343, 497, 515
CviQI	GTAC	2 cut(s)	4, 422
DdeI	CTNAG	4 cut(s)	188, 250, 492, 588
DpnI	GATC	1 cut(s)	661
DpnII	GATC	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	129, 483
EarI	CTCTTC	2 cut(s)	129, 483
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	187
Eco81I	CCTNAGG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	133, 258
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	1 cut(s)	443
FaiI	YATR	9 cut(s)	152, 214, 216, 256, 270, 312, 396, 441, 651
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	1 cut(s)	439
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	200, 373
FokI	GGATG	4 cut(s)	17, 286, 364, 632
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	200, 373
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	200, 373
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	309
HgaI	GACGC	2 cut(s)	13, 96
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	443
HinfI	GANTC	4 cut(s)	130, 139, 410, 443
HphI	GGTGA	2 cut(s)	275, 469
Hpy166II	GTNNAC	2 cut(s)	39, 365
Hpy188I	TCNGA	4 cut(s)	129, 236, 589, 667
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	39, 365
Hpy99I	CGWCG	1 cut(s)	90
HpyCH4III	ACNGT	3 cut(s)	163, 369, 566
HpyCH4V	TGCA	6 cut(s)	330, 581, 603, 623, 632, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 255, 336, 629
HpyF3I	CTNAG	4 cut(s)	188, 250, 492, 588
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	443
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	659
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	5 cut(s)	186, 477, 568, 610, 652
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	263, 469
MalI	GATC	1 cut(s)	661
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	1 cut(s)	659
MboII	GAAGA	7 cut(s)	52, 116, 190, 438, 470, 515, 587
MfeI	CAATTG	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	3 cut(s)	8, 94, 677
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	152
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	2 cut(s)	108, 339
MspR9I	CCNGG	2 cut(s)	135, 260
MunI	CAATTG	1 cut(s)	94
MvaI	CCWGG	2 cut(s)	135, 260
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	4 cut(s)	87, 255, 336, 629
NdeII	GATC	1 cut(s)	659
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	263
PagI	TCATGA	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	139, 410, 443
PflMI	CCANNNNNTGG	2 cut(s)	13, 305
PkrI	GCNGC	2 cut(s)	201, 374
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	133, 258
PspGI	CCWGG	2 cut(s)	133, 258
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	99
PvuII	CAGCTG	1 cut(s)	339
RsaI	GTAC	2 cut(s)	5, 423
RsaNI	GTAC	2 cut(s)	4, 422
RseI	CAYNNNNRTG	1 cut(s)	654
SacI	GAGCTC	1 cut(s)	189
SacII	CCGCGG	1 cut(s)	109
SatI	GCNGC	2 cut(s)	200, 373
Sau3AI	GATC	1 cut(s)	659
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	135, 260
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	4 cut(s)	189, 227, 341, 517
SfaNI	GCATC	5 cut(s)	186, 477, 568, 610, 652
SfcI	CTRYAG	2 cut(s)	482, 516
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	3 cut(s)	8, 94, 677
SsiI	CCGC	5 cut(s)	106, 108, 275, 373, 455
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	133, 258
TaaI	ACNGT	3 cut(s)	163, 369, 566
TaqI	TCGA	1 cut(s)	85
TasI	AATT	3 cut(s)	8, 94, 677
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	3 cut(s)	139, 410, 443
TscAI	CASTG	2 cut(s)	166, 372
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	423, 456
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	166, 372
Van91I	CCANNNNNTGG	2 cut(s)	13, 305
VpaK11BI	GGWCC	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.