Rroxscaffold_7G00217530

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013126
Physical Location & Seq
Forward (+)
68014491 .. 68016472
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217530.1

Sequence Viewer

Length: 807 bp
ATGTCTTACAATCACGTCTATCCCAGATGTTGCACGCTCTCTCCAGAACCCAACAAGCCAAACGACAAACCTTCAGGTTCGGGTTCAGGTGAATTCAAGCTCTACCAATTTTTCGTCTTTTGTGTCCCAATCTTCTTCACTTTCATCCTCCTCTTTGTCTTCTACTTGTTCTATCTTCGCCCTCGACGTGTCAATTGGTCCTCTATTCGAATGAGGACGGCTCCACAAAATGATGACATTAATGACATTGCCACAGTTGAATTGGGCTTGCAAAAAGAACACAGAGAGATGCTACCCATTGTTGTATATAACGAAAGCTTCTCTGTCAGAGATACACAATGCGCAGTATGCCTGGGGGACTATCAAGCAGATGATAGGCTTCAACAAATACCAGCCTGTGGCCACACGTTTCACATTGCTTGCATTGATAGCTGGCTATCCATGCACACCACCTGTCCACTCTGCCGCTTATCCCTCCTTTCATCTCATAAATCCCAAAATGAATCACCTGATGTAACTCTAGAATTGAGTCATGCGTCTTCTGTTGCAGAGAATGATGCACCATCTCTGGCACCGACACCCCAAGCTTGTGAAGAAACAGAAGCTTCACAGTTCTCTGGGTTAAGGAATGGGAAACCAAGAACTGTCCAAAACAGTTCTGAAGAAGATGCAAGAGGTTATCAATGTGCAGATCACACCAGAGAATTAAGGGATGCCAGAATAGAAAATGAAGTGCATGAGCATACTAGTGGATCTTCTGGTAAGTTTGACTATCACATGTCCACTGGATATTGCTATAATTTGTGA

Protein Analysis

268

Amino Acids

30.38

Weight (kDa)

5.53

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 113 - 156 9.9e-14 Ring finger domain
zf-RING_11 PF17123 113 - 142 1.1e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 113 - 155 5.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 114 - 155 1.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 126 - 156 3.1e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33480 AT4G10150 AT4G10160
fragaria_vesca FvH4_2g00300
malus_domestica MD05G1006000.v1.1
prunus_persica Prupe.8G002900_v2.0.a1
pyrus_communis pycom05g00120
rosa_chinensis RchiOBHm_Chr6g0249581
rosa_laevigata RLG00000015560
rosa_multiflora Rmu_sc0006936.1_g000008 Rmu_sc0013555.1_g000005
rosa_roxburghii Rroxscaffold_7G00217530
rosa_rugosa Rorug05G0493800
rosa_samantha Rh6AG003600 Rh6BG006600 Rh6CG002700 Rh6DG002500
rosa_wichuraiana Rw6G000400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 571
AccB7I CCANNNNNTGG 1 cut(s) 398
AciI CCGC 1 cut(s) 466
AclWI GGATC 1 cut(s) 760
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 57, 681
AfiI CCNNNNNNNGG 1 cut(s) 398
AflIII ACRYGT 3 cut(s) 187, 405, 777
AgsI TTSAA 3 cut(s) 97, 260, 383
AhlI ACTAGT 1 cut(s) 746
AjiI CACGTC 2 cut(s) 16, 188
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 5 cut(s) 100, 318, 432, 587, 605
AluI AGCT 5 cut(s) 100, 318, 432, 587, 605
AlwI GGATC 1 cut(s) 760
AoxI GGCC 1 cut(s) 400
ApoI RAATTY 1 cut(s) 92
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 101, 498
AsuII TTCGAA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 402
BanI GGYRCC 1 cut(s) 571
BbsI GAAGAC 2 cut(s) 151, 531
BccI CCATC 1 cut(s) 571
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 353
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 2 cut(s) 521, 747
BisI GCNGC 1 cut(s) 466
BlsI GCNGC 1 cut(s) 467
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 198
BmgBI CACGTC 2 cut(s) 16, 188
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 222, 573
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 4 cut(s) 279, 547, 658, 703
BpiI GAAGAC 2 cut(s) 151, 531
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpmI CTGGAG 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 790
Bse3DI GCAATG 2 cut(s) 246, 414
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 144, 718
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 2 cut(s) 246, 414
BseNI ACTGG 1 cut(s) 790
BseRI GAGGAG 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 1 cut(s) 402
BshNI GGYRCC 1 cut(s) 571
BslFI GGGAC 2 cut(s) 110, 371
BslI CCNNNNNNNGG 1 cut(s) 398
BsmFI GGGAC 2 cut(s) 110, 371
BsnI GGCC 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 208
Bsp143I GATC 2 cut(s) 691, 752
BspACI CCGC 1 cut(s) 466
BspANI GGCC 1 cut(s) 402
BspLI GGNNCC 2 cut(s) 222, 573
BspPI GGATC 1 cut(s) 760
BspT104I TTCGAA 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 571
BsrDI GCAATG 2 cut(s) 246, 414
BsrI ACTGG 1 cut(s) 790
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 2 cut(s) 691, 752
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 4 cut(s) 256, 612, 646, 656
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 4 cut(s) 35, 269, 421, 434
BstF5I GGATG 2 cut(s) 144, 718
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 2 cut(s) 694, 755
BstMBI GATC 2 cut(s) 691, 752
BstMWI GCNNNNNNNGC 3 cut(s) 348, 429, 442
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 781
BstSCI CCNGG 1 cut(s) 351
BstV2I GAAGAC 2 cut(s) 151, 531
BstX2I RGATCY 1 cut(s) 752
BstYI RGATCY 1 cut(s) 752
BsuRI GGCC 1 cut(s) 402
BtrI CACGTC 2 cut(s) 16, 188
BtsCI GGATG 2 cut(s) 144, 718
BtsIMutI CAGTG 1 cut(s) 783
Cac8I GCNNGC 4 cut(s) 35, 269, 421, 434
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 198
CseI GACGC 1 cut(s) 525
CviAII CATG 4 cut(s) 442, 533, 737, 778
DpnI GATC 2 cut(s) 693, 754
DpnII GATC 2 cut(s) 691, 752
EaeI YGGCCR 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 198
Eco57I CTGAAG 2 cut(s) 57, 681
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 351
FaeI CATG 4 cut(s) 445, 536, 740, 781
FaqI GGGAC 2 cut(s) 110, 371
FatI CATG 4 cut(s) 441, 532, 736, 777
Fnu4HI GCNGC 1 cut(s) 466
FokI GGATG 2 cut(s) 131, 725
Fsp4HI GCNGC 1 cut(s) 466
FspBI CTAG 2 cut(s) 521, 747
FspI TGCGCA 1 cut(s) 343
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 466
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 402
HgaI GACGC 1 cut(s) 525
HhaI GCGC 1 cut(s) 344
Hin1II CATG 4 cut(s) 445, 536, 740, 781
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HindIII AAGCTT 3 cut(s) 316, 585, 603
HinfI GANTC 2 cut(s) 503, 529
HphI GGTGA 2 cut(s) 101, 498
Hpy166II GTNNAC 2 cut(s) 458, 783
Hpy188I TCNGA 2 cut(s) 329, 661
Hpy188III TCNNGA 2 cut(s) 44, 521
Hpy8I GTNNAC 2 cut(s) 458, 783
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 4 cut(s) 256, 612, 646, 656
HpyCH4IV ACGT 3 cut(s) 15, 187, 407
HpyCH4V TGCA 9 cut(s) 33, 271, 423, 445, 548, 560, 671, 689, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 429, 442
HpySE526I ACGT 3 cut(s) 15, 187, 407
Hsp92II CATG 4 cut(s) 445, 536, 740, 781
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 2 cut(s) 691, 752
LmnI GCTCC 1 cut(s) 226
LweI GCATC 4 cut(s) 279, 547, 658, 703
MaeI CTAG 2 cut(s) 521, 747
MaeII ACGT 3 cut(s) 15, 187, 407
MaeIII GTNAC 1 cut(s) 514
MalI GATC 2 cut(s) 693, 754
MboI GATC 2 cut(s) 691, 752
MboII GAAGA 9 cut(s) 124, 127, 151, 167, 531, 605, 674, 677, 747
MfeI CAATTG 1 cut(s) 193
MflI RGATCY 1 cut(s) 752
MlsI TGGCCA 1 cut(s) 402
MluCI AATT 7 cut(s) 92, 107, 193, 260, 524, 704, 799
MluNI TGGCCA 1 cut(s) 402
MlyI GAGTC 1 cut(s) 538
MnlI CCTC 7 cut(s) 158, 161, 192, 207, 211, 485, 668
Mox20I TGGCCA 1 cut(s) 402
MscI TGGCCA 1 cut(s) 402
MseI TTAA 3 cut(s) 240, 623, 707
MslI CAYNNNNRTG 1 cut(s) 747
Msp20I TGGCCA 1 cut(s) 402
MspR9I CCNGG 1 cut(s) 353
MunI CAATTG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 348, 429, 442
NdeII GATC 2 cut(s) 691, 752
NlaIII CATG 4 cut(s) 445, 536, 740, 781
NlaIV GGNNCC 2 cut(s) 222, 573
NsbI TGCGCA 1 cut(s) 343
NspI RCATGY 1 cut(s) 781
NspV TTCGAA 1 cut(s) 208
PciI ACATGT 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PfeI GAWTC 1 cut(s) 503
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 1 cut(s) 467
PleI GAGTC 1 cut(s) 537
PpsI GAGTC 1 cut(s) 537
PscI ACATGT 1 cut(s) 777
PshBI ATTAAT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 222, 573
PspPI GGNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 752
RseI CAYNNNNRTG 1 cut(s) 747
SaqAI TTAA 3 cut(s) 240, 623, 707
SatI GCNGC 1 cut(s) 466
Sau3AI GATC 2 cut(s) 691, 752
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 353
SfaNI GCATC 4 cut(s) 279, 547, 658, 703
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 747
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 7 cut(s) 92, 107, 193, 260, 524, 704, 799
SsiI CCGC 1 cut(s) 466
SspMI CTAG 2 cut(s) 521, 747
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 4 cut(s) 256, 612, 646, 656
TaiI ACGT 3 cut(s) 18, 190, 410
TaqI TCGA 2 cut(s) 184, 208
TasI AATT 7 cut(s) 92, 107, 193, 260, 524, 704, 799
TauI GCSGC 1 cut(s) 468
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 3 cut(s) 240, 623, 707
Tru9I TTAA 3 cut(s) 240, 623, 707
TscAI CASTG 1 cut(s) 790
TspDTI ATGAA 4 cut(s) 133, 471, 516, 744
TspRI CASTG 1 cut(s) 790
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 198
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 520
XceI RCATGY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XspI CTAG 2 cut(s) 521, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.