AT1G34350

Transmembrane protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015433
Physical Location & Seq
Forward (+)
12534426 .. 12536162
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34350.2

Sequence Viewer

Length: 492 bp
ATGGAAGAAATAAGATCGGCGATGGAGAAGCAAGTGGATCTCGTAGCGGATCTGGTTGAGAAACTCTCCGGAGAGCTCCGAACGGGGTTTCAACCTGCTTACGATAATTTCTTGGGGTTTTTCCACGCCATTGATTGGAAGGAACCTTGGATTATGGGTTTAATGGCGTTTCATGCTTTGTTGTTACTAGTGACTCTTCTTTCTAGAAGGCATCTCAACTTCCATATGTTCCTCTTCTTATTGGCTTTGGCTGGGGTATACTTTGCAGAGAATCTCAACCGGGAGTTGAGGAAAAACTGGAAGAGCTTCTCAACTCAAAACTACTTTGACTCGAACGGAGTCTTCCTATCGACTCTCTGGTCTGGACCACTTTTGGTCATTGCAATGATAATCCTGATAAACACACTCTTTTCGCTTTGCTACTTAATCGTAAAGTGGAAAAGAGCTGAGCTCAGGCATCGCGCAAGGCTTGCTCATACCAAGGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM18

Protein Analysis

163

Amino Acids

19.09

Weight (kDa)

8.76

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM18 PF14770 39 - 83 2.1e-12 Transmembrane protein 18
TMEM18 PF14770 104 - 181 2.3e-28 Transmembrane protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015433)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34350 AT1G34350
fragaria_vesca FvH4_2g12231
malus_domestica MD05G1040400.v1.1 MD10G1046500.v1.1
prunus_persica Prupe.8G054100_v2.0.a1
pyrus_communis pycom05g03300 pycom10g03270
rosa_chinensis RchiOBHm_Chr6g0272201
rosa_laevigata RLG00000013692
rosa_multiflora Rmu_sc0005748.1_g000009
rosa_roxburghii Rroxscaffold_7G00196500
rosa_rugosa Rorug06G0067100
rosa_samantha Rh6AG183600
rosa_wichuraiana Rw0G003850 Rw6G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 358
Acc36I ACCTGC 1 cut(s) 103
AccB7I CCANNNNNTGG 1 cut(s) 135
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 1 cut(s) 47
AclWI GGATC 2 cut(s) 45, 57
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 1 cut(s) 92
AhlI ACTAGT 1 cut(s) 187
AluBI AGCT 4 cut(s) 76, 306, 446, 451
AluI AGCT 4 cut(s) 76, 306, 446, 451
Alw21I GWGCWC 2 cut(s) 78, 453
AlwI GGATC 2 cut(s) 45, 57
Aor13HI TCCGGA 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 365
BanII GRGCYC 2 cut(s) 78, 453
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 2 cut(s) 78, 453
BccI CCATC 1 cut(s) 16
BcnI CCSGG 1 cut(s) 281
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 2 cut(s) 188, 204
BfuAI ACCTGC 1 cut(s) 103
BlpI GCTNAGC 1 cut(s) 447
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 220, 466
BpiI GAAGAC 1 cut(s) 334
BplI GAGNNNNNCTC 4 cut(s) 50, 82, 435, 467
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 146, 480
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 2 cut(s) 378, 390
BseAI TCCGGA 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 146, 480
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 2 cut(s) 378, 390
BseMII CTCAG 2 cut(s) 438, 466
BseNI ACTGG 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 462
BsiHKAI GWGCWC 2 cut(s) 78, 453
BsiSI CCGG 2 cut(s) 69, 280
BslI CCNNNNNNNGG 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 78, 453
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 3 cut(s) 14, 37, 49
Bsp1720I GCTNAGC 1 cut(s) 447
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 439, 465
BspEI TCCGGA 1 cut(s) 68
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 2 cut(s) 45, 57
BspQI GCTCTTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 378, 390
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 146, 480
BssMI GATC 3 cut(s) 14, 37, 49
BssNAI GTATAC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 146, 480
Bst1107I GTATAC 1 cut(s) 259
Bst6I CTCTTC 3 cut(s) 201, 239, 296
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 2 cut(s) 447, 452
BstFNI CGCG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 3 cut(s) 17, 40, 52
BstMBI GATC 3 cut(s) 14, 37, 49
BstMWI GCNNNNNNNGC 2 cut(s) 173, 470
BstSCI CCNGG 1 cut(s) 279
BstUI CGCG 1 cut(s) 462
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 2 cut(s) 37, 49
BstYI RGATCY 2 cut(s) 37, 49
BstZ17I GTATAC 1 cut(s) 259
BtgZI GCGATG 2 cut(s) 35, 443
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 471
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 365
CviAII CATG 1 cut(s) 173
CviJI RGCY 7 cut(s) 76, 245, 251, 306, 446, 451, 469
CviKI_1 RGCY 7 cut(s) 76, 245, 251, 306, 446, 451, 469
DdeI CTNAG 2 cut(s) 447, 452
DpnI GATC 3 cut(s) 16, 39, 51
DpnII GATC 3 cut(s) 14, 37, 49
DrdI GACNNNNNNGTC 1 cut(s) 358
DseDI GACNNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 3 cut(s) 201, 239, 296
EarI CTCTTC 3 cut(s) 201, 239, 296
Ecl136II GAGCTC 2 cut(s) 76, 451
Eco130I CCWWGG 2 cut(s) 146, 480
Eco24I GRGCYC 2 cut(s) 78, 453
Eco47I GGWCC 1 cut(s) 365
Eco53kI GAGCTC 2 cut(s) 76, 451
EcoICRI GAGCTC 2 cut(s) 76, 451
EcoT14I CCWWGG 2 cut(s) 146, 480
EcoT38I GRGCYC 2 cut(s) 78, 453
ErhI CCWWGG 2 cut(s) 146, 480
FaeI CATG 1 cut(s) 176
FaiI YATR 6 cut(s) 155, 174, 225, 227, 259, 477
FatI CATG 1 cut(s) 172
FauNDI CATATG 1 cut(s) 225
FblI GTMKAC 1 cut(s) 258
FriOI GRGCYC 2 cut(s) 78, 453
FspBI CTAG 2 cut(s) 188, 204
GlaI GCGC 1 cut(s) 463
GsaI CCCAGC 1 cut(s) 255
HapII CCGG 2 cut(s) 69, 280
HhaI GCGC 1 cut(s) 464
Hin1II CATG 1 cut(s) 176
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HinfI GANTC 5 cut(s) 193, 271, 329, 339, 352
HpaII CCGG 2 cut(s) 69, 280
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 4 cut(s) 69, 204, 363, 394
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 133, 201
HpyCH4V TGCA 2 cut(s) 266, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 470
HpyF3I CTNAG 2 cut(s) 447, 452
Hsp92II CATG 1 cut(s) 176
HspAI GCGC 1 cut(s) 462
Kpn2I TCCGGA 1 cut(s) 68
Kzo9I GATC 3 cut(s) 14, 37, 49
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 81
LweI GCATC 2 cut(s) 220, 466
MaeI CTAG 2 cut(s) 188, 204
MaeIII GTNAC 2 cut(s) 183, 190
MalI GATC 3 cut(s) 16, 39, 51
MboI GATC 3 cut(s) 14, 37, 49
MboII GAAGA 5 cut(s) 17, 188, 226, 313, 334
MflI RGATCY 2 cut(s) 37, 49
MhlI GDGCHC 2 cut(s) 78, 453
MluCI AATT 1 cut(s) 106
MlyI GAGTC 4 cut(s) 187, 323, 346, 348
MnlI CCTC 3 cut(s) 242, 282, 478
MroI TCCGGA 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 2 cut(s) 161, 425
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 2 cut(s) 69, 280
MspR9I CCNGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 173, 470
NciI CCSGG 1 cut(s) 281
NdeI CATATG 1 cut(s) 225
NdeII GATC 3 cut(s) 14, 37, 49
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 135
PleI GAGTC 4 cut(s) 187, 323, 346, 347
PpsI GAGTC 4 cut(s) 187, 323, 346, 347
Psp124BI GAGCTC 2 cut(s) 78, 453
PspFI CCCAGC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 365
PsuI RGATCY 2 cut(s) 37, 49
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 2 cut(s) 78, 453
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 161, 425
Sau3AI GATC 3 cut(s) 14, 37, 49
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 4 cut(s) 187, 323, 346, 348
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 2 cut(s) 78, 453
SetI ASST 6 cut(s) 78, 97, 148, 308, 448, 453
SfaNI GCATC 2 cut(s) 220, 466
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 1 cut(s) 106
SsiI CCGC 1 cut(s) 47
SspMI CTAG 2 cut(s) 188, 204
SstI GAGCTC 2 cut(s) 78, 453
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 2 cut(s) 146, 480
TaqI TCGA 2 cut(s) 332, 350
TasI AATT 1 cut(s) 106
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 161, 425
Tru9I TTAA 2 cut(s) 161, 425
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 351
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 2 cut(s) 188, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.