Prupe.8G054100_v2.0.a1

Transmembrane protein 18

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
6139665 .. 6142888
3224 bp
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UTR
Exon/CDS
Intron
Prupe.8G054100.1

Sequence Viewer

Length: 492 bp
ATGGAGCAGCTTCGGTCAGCCATGGAGGAGCACATGGAGCAAATGGCAGATCTCGTCCAGAAACTCTCCGCAGAGTTACGTTCTGGTCTTAAACCCGCTTTGGACAATTTCTTGGGTTTTTTCCACGCTATCAACTGGAAGGAGCCTTGGTTGATGGGTTTAATCGGCAGCCATTTTGTGTTGCTGATAGTGGCTATTACTTCCAGGAAGAATCTTAACTTCCAAATGTTTTTGTTCCTTTTGGCATTGGCTGGAGTATATCTTGCAGAGAGGCTCAATAGTTTACTGGGTGAGAACTGGAAGAGCTTTTCCACTCAGAATTATTTTGATCCAAATGGAGTTTTTCTCTCATCAGTCTGGTCTGGGCCTCTTCTCATCATTGCAATCATAATTTTGATAAACACACTCTTCTCCTTGTGTCGCCTGATTGTTAGGTGGAAAAGAGCTGAGCTAAGACATCGTGCAAGACTTTCTCAAAATAAGCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

18.81

Weight (kDa)

9.51

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015433)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34350 AT1G34350
fragaria_vesca FvH4_2g12231
malus_domestica MD05G1040400.v1.1 MD10G1046500.v1.1
prunus_persica Prupe.8G054100_v2.0.a1
pyrus_communis pycom05g03300 pycom10g03270
rosa_chinensis RchiOBHm_Chr6g0272201
rosa_laevigata RLG00000013692
rosa_multiflora Rmu_sc0005748.1_g000009
rosa_roxburghii Rroxscaffold_7G00196500
rosa_rugosa Rorug06G0067100
rosa_samantha Rh6AG183600
rosa_wichuraiana Rw0G003850 Rw6G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 69, 96
AclWI GGATC 1 cut(s) 323
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 4 cut(s) 10, 306, 446, 451
AluI AGCT 4 cut(s) 10, 306, 446, 451
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 1 cut(s) 323
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 7, 168
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 19, 180
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 205
BglII AGATCT 1 cut(s) 49
BisI GCNGC 2 cut(s) 8, 169
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 2 cut(s) 9, 170
Bme1390I CCNGG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 205
BmrI ACTGGG 1 cut(s) 296
BmuI ACTGGG 1 cut(s) 296
BplI GAGNNNNNCTC 2 cut(s) 330, 362
BpmI CTGGAG 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 21, 146
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bse1I ACTGG 3 cut(s) 140, 291, 302
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 21, 146
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 329, 438
BseNI ACTGG 3 cut(s) 140, 291, 302
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 19, 180
BshFI GGCC 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 33
BsnI GGCC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 2 cut(s) 49, 328
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 69, 96
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 328, 439
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 3 cut(s) 140, 291, 302
BssECI CCNNGG 2 cut(s) 21, 146
BssMI GATC 2 cut(s) 49, 328
BssT1I CCWWGG 2 cut(s) 21, 146
Bst2UI CCWGG 1 cut(s) 205
Bst6I CTCTTC 3 cut(s) 296, 375, 413
BstDEI CTNAG 3 cut(s) 315, 447, 452
BstDSI CCRYGG 1 cut(s) 21
BstKTI GATC 2 cut(s) 52, 331
BstMBI GATC 2 cut(s) 49, 328
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 19, 180
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 365
CviAII CATG 2 cut(s) 22, 34
DdeI CTNAG 3 cut(s) 315, 447, 452
DpnI GATC 2 cut(s) 51, 330
DpnII GATC 2 cut(s) 49, 328
Eam1104I CTCTTC 3 cut(s) 296, 375, 413
EarI CTCTTC 3 cut(s) 296, 375, 413
Eco130I CCWWGG 2 cut(s) 21, 146
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 21, 146
ErhI CCWWGG 2 cut(s) 21, 146
FaeI CATG 2 cut(s) 25, 37
FaiI YATR 4 cut(s) 23, 35, 259, 389
FatI CATG 2 cut(s) 21, 33
FauI CCCGC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 8, 169
Fsp4HI GCNGC 2 cut(s) 8, 169
GluI GCNGC 2 cut(s) 8, 169
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 367
Hin1II CATG 2 cut(s) 25, 37
HinfI GANTC 1 cut(s) 211
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 266, 383, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 3 cut(s) 315, 447, 452
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 25, 37
Kzo9I GATC 2 cut(s) 49, 328
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 4 cut(s) 4, 28, 37, 142
Lsp1109I GCAGC 2 cut(s) 19, 180
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 75
MalI GATC 2 cut(s) 51, 330
MboI GATC 2 cut(s) 49, 328
MboII GAAGA 4 cut(s) 220, 313, 362, 400
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 3 cut(s) 106, 319, 390
MnlI CCTC 3 cut(s) 19, 264, 378
MseI TTAA 3 cut(s) 90, 161, 216
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 37
NcoI CCATGG 1 cut(s) 21
NdeII GATC 2 cut(s) 49, 328
NlaIII CATG 2 cut(s) 25, 37
NlaIV GGNNCC 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 2 cut(s) 9, 170
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 365
PsuI RGATCY 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 90, 161, 216
SatI GCNGC 2 cut(s) 8, 169
Sau3AI GATC 2 cut(s) 49, 328
Sau96I GGNCC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 33
SetI ASST 6 cut(s) 12, 82, 308, 437, 448, 453
Sse9I AATT 3 cut(s) 106, 319, 390
SsiI CCGC 2 cut(s) 69, 96
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 2 cut(s) 21, 146
TaiI ACGT 1 cut(s) 82
TasI AATT 3 cut(s) 106, 319, 390
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 3 cut(s) 90, 161, 216
Tru9I TTAA 3 cut(s) 90, 161, 216
TseI GCWGC 2 cut(s) 7, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.