AT1G36320

protein At4g37920, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014976
Physical Location & Seq
Forward (+)
13671774 .. 13674205
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G36320.1

Sequence Viewer

Length: 1245 bp
ATGGTTTCAGTGTTATTCCAATCTTCATGTTCCTGTTCACTTTCTAGCTTTCGCTCTGTAAAATTCGGAGCCCGTTTAGTCTCTCCTCTGTATTTCGCCGGCAATCATGTTCATGTCACTTCCGGTAGTCTTCCAATCGGAAAAGGAAGTTTATTGAACCTCAAGAGTGAAAGACCTCAGAGATTTGTTATCTCAGCTGTTGTGGATGATAAAAGTGTTGTAGCTAAAGAGGAGAAGAAAGATGGTTCTGAAGAGGTTGTTGTAGATAACCAGAGAATGATCAAAGTTTGTGATAAGCTTATTGAGGTTTTTATGGTTGATAAGCCTACACCATCTGATTGGAGAAGATTGTTAGCTTTTAGCAAAGAATGGGATAGTATACGGCCACATTTCTATAAACGGTGTCAGGAACGAGCTGATTCTGAGGATAACCCTGAGATGAAGCATAAGGTTCATCGACTTGCAAGGAAGCTCAAGGAGGTTGATGAAGATATTCAAAGGCATAATGAGCTTCTCAATGTTATCAAGAGGACACCACCAGCTGAAATTGGTGAACTTGTTGCTAGGCGTCGTAAAGATTTCACAAACGAGTTTTTTGAGCATTTGCATACTGTTGCTGAATCCTACTATGACAATCCGGATGAGCAAAATGCTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACACTTCAACAGAAAGCATTGATGCGCTAAATGCTGCGGAAATGAAGCTTCAGGACATTATCAACTCTCCTTCGCTTGATGCTGCCTGTAGAAAGATTGATAGTTTGGCTGAGAAGAATCAACTTGATTCTGCGTTGGTTCTTATGATCACTAAAGCTTGGTCGGCTGCTAAGGAATCCAACATGATGAAAGAAGAGGTAAAAGACATATTGTATCACTTGTACGTAACAGCAAGAGGGAATCTGCAGAGGCTGATGCCGAAAGAGGTGAGAATACTTAAGTATCTACTATCAATAGAGGATCCCCAAGAACAGATAAGCGCTCTACAAGATGCTTTTACCCCTGGGGACGAGCTCGAAGGGACTGATGTAGACTACTTATACACGACGCCTGAGCATTTGCAGAGCTTGATGAAAACGGTGTTGGAAGCGTATCATTTCAGCAGAGAAGGGAGTCTAGTGAAGGAAGCAAAAGACCTTATGCATCCTGAGCTCATCGCCAAAATCGAACAACTCAAGAAGCTTGTTGAAAAGAAGTATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

47.17

Weight (kDa)

6.01

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36320
fragaria_vesca FvH4_5g38330 FvH4_5g38330 FvH4_5g38330
malus_domestica MD08G1174600.v1.1 MD15G1361200.v1.1
prunus_persica Prupe.1G508600_v2.0.a1 Prupe.1G508600_v2.0.a1
pyrus_communis pycom08g14960
rosa_chinensis RchiOBHm_Chr7g0240351
rosa_multiflora Rmu_sc0038179.1_g000001
rosa_roxburghii Rroxscaffold_3G00220200
rosa_samantha Rh7AG489300 Rh7BG462300 Rh7CG505600
rosa_wichuraiana Rw7G040940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 379, 1071
AccIII TCCGGA 1 cut(s) 637
AciI CCGC 1 cut(s) 737
AclWI GGATC 2 cut(s) 995, 1008
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 2 cut(s) 270, 734
AcyI GRCGYC 2 cut(s) 568, 1088
AfaI GTAC 2 cut(s) 690, 923
AfeI AGCGCT 1 cut(s) 1021
AflII CTTAAG 1 cut(s) 977
AgsI TTSAA 4 cut(s) 157, 497, 708, 1229
AjnI CCWGG 1 cut(s) 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 1106, 1138
Alw21I GWGCWC 2 cut(s) 1056, 1194
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 2 cut(s) 995, 1008
AlwNI CAGNNNCTG 1 cut(s) 952
Aor13HI TCCGGA 1 cut(s) 637
Aor51HI AGCGCT 1 cut(s) 1021
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 4 cut(s) 683, 734, 782, 866
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 2 cut(s) 727, 1022
AsuHPI GGTGA 2 cut(s) 563, 979
BaeI ACNNNNGTAYC 2 cut(s) 965, 998
BamHI GGATCC 1 cut(s) 1000
BanII GRGCYC 3 cut(s) 73, 1056, 1194
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 1056, 1194
BbvI GCAGC 4 cut(s) 670, 721, 769, 853
BccI CCATC 2 cut(s) 236, 340
BceAI ACGGC 1 cut(s) 398
BciT130I CCWGG 1 cut(s) 1044
BclI TGATCA 2 cut(s) 279, 846
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 3 cut(s) 45, 564, 1157
BfmI CTRYAG 3 cut(s) 678, 787, 944
BfoI RGCGCY 1 cut(s) 1023
BfrI CTTAAG 1 cut(s) 977
BisI GCNGC 4 cut(s) 684, 735, 783, 867
BlsI GCNGC 4 cut(s) 685, 736, 784, 868
Bme1390I CCNGG 1 cut(s) 1044
BmiI GGNNCC 2 cut(s) 70, 1002
BmrFI CCNGG 1 cut(s) 1044
BmsI GCATC 5 cut(s) 712, 769, 945, 1021, 1192
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 3 cut(s) 870, 1092, 1188
BpuEI CTTGAG 3 cut(s) 146, 458, 1199
BsaAI YACGTR 1 cut(s) 925
BsaHI GRCGYC 2 cut(s) 568, 1088
BsaJI CCNNGG 2 cut(s) 1042, 1043
BsaWI WCCGGW 2 cut(s) 122, 637
Bse118I RCCGGY 1 cut(s) 98
BseAI TCCGGA 1 cut(s) 637
BseBI CCWGG 1 cut(s) 1044
BseDI CCNNGG 2 cut(s) 1042, 1043
BseGI GGATG 3 cut(s) 211, 646, 1183
BseMII CTCAG 7 cut(s) 191, 207, 414, 426, 801, 1083, 1179
BseRI GAGGAG 2 cut(s) 75, 245
BseXI GCAGC 4 cut(s) 670, 721, 769, 853
BshFI GGCC 1 cut(s) 385
BsiHKAI GWGCWC 2 cut(s) 1056, 1194
BsiSI CCGG 3 cut(s) 99, 123, 638
BslFI GGGAC 2 cut(s) 1061, 1075
BsmAI GTCTC 1 cut(s) 85
BsmFI GGGAC 2 cut(s) 1061, 1075
BsnI GGCC 1 cut(s) 385
Bsp1286I GDGCHC 3 cut(s) 73, 1056, 1194
Bsp13I TCCGGA 1 cut(s) 637
Bsp1407I TGTACA 1 cut(s) 688
Bsp143I GATC 3 cut(s) 279, 846, 1000
BspACI CCGC 1 cut(s) 737
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 7 cut(s) 190, 206, 415, 427, 802, 1084, 1180
BspEI TCCGGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 70, 1002
BspMAI CTGCAG 1 cut(s) 948
BspPI GGATC 2 cut(s) 995, 1008
BspTI CTTAAG 1 cut(s) 977
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 688
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 1042, 1043
BssMI GATC 3 cut(s) 279, 846, 1000
BssNAI GTATAC 1 cut(s) 380
BssNI GRCGYC 2 cut(s) 568, 1088
Bst1107I GTATAC 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 1044
Bst4CI ACNGT 3 cut(s) 402, 613, 1120
Bst6I CTCTTC 2 cut(s) 246, 888
BstACI GRCGYC 2 cut(s) 568, 1088
BstAFI CTTAAG 1 cut(s) 977
BstAUI TGTACA 1 cut(s) 688
BstBAI YACGTR 1 cut(s) 925
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 8 cut(s) 177, 193, 423, 435, 810, 870, 1092, 1188
BstF5I GGATG 3 cut(s) 211, 646, 1183
BstH2I RGCGCY 1 cut(s) 1023
BstHHI GCGC 2 cut(s) 727, 1022
BstKTI GATC 3 cut(s) 282, 849, 1003
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 3 cut(s) 279, 846, 1000
BstMWI GCNNNNNNNGC 5 cut(s) 508, 692, 731, 863, 1189
BstNI CCWGG 1 cut(s) 1044
BstSCI CCNGG 1 cut(s) 1042
BstSFI CTRYAG 3 cut(s) 678, 787, 944
BstSNI TACGTA 1 cut(s) 925
BstV1I GCAGC 4 cut(s) 670, 721, 769, 853
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 1000
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 1000
BstZ17I GTATAC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 385
BtgZI GCGATG 1 cut(s) 1180
BtsCI GGATG 3 cut(s) 211, 646, 1183
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 100
CaiI CAGNNNCTG 1 cut(s) 952
CfoI GCGC 2 cut(s) 727, 1022
Cfr10I RCCGGY 1 cut(s) 98
CseI GACGC 3 cut(s) 557, 648, 1096
Csp6I GTAC 2 cut(s) 689, 922
CviAII CATG 4 cut(s) 27, 107, 113, 883
CviQI GTAC 2 cut(s) 689, 922
DdeI CTNAG 8 cut(s) 177, 193, 423, 435, 810, 870, 1092, 1188
DpnI GATC 3 cut(s) 281, 848, 1002
DpnII GATC 3 cut(s) 279, 846, 1000
EaeI YGGCCR 1 cut(s) 383
Eam1104I CTCTTC 2 cut(s) 246, 888
EarI CTCTTC 2 cut(s) 246, 888
Ecl136II GAGCTC 2 cut(s) 1054, 1192
Eco105I TACGTA 1 cut(s) 925
Eco24I GRGCYC 3 cut(s) 73, 1056, 1194
Eco47III AGCGCT 1 cut(s) 1021
Eco53kI GAGCTC 2 cut(s) 1054, 1192
Eco57I CTGAAG 2 cut(s) 270, 734
EcoICRI GAGCTC 2 cut(s) 1054, 1192
EcoRII CCWGG 1 cut(s) 1042
EcoT22I ATGCAT 1 cut(s) 1185
EcoT38I GRGCYC 3 cut(s) 73, 1056, 1194
FaeI CATG 4 cut(s) 30, 110, 116, 886
FaqI GGGAC 2 cut(s) 1061, 1075
FatI CATG 4 cut(s) 26, 106, 112, 882
FbaI TGATCA 2 cut(s) 279, 846
FblI GTMKAC 2 cut(s) 379, 1071
Fnu4HI GCNGC 4 cut(s) 684, 735, 783, 867
FokI GGATG 3 cut(s) 218, 653, 1170
FriOI GRGCYC 3 cut(s) 73, 1056, 1194
Fsp4HI GCNGC 4 cut(s) 684, 735, 783, 867
FspBI CTAG 3 cut(s) 45, 564, 1157
GlaI GCGC 2 cut(s) 726, 1021
GluI GCNGC 4 cut(s) 684, 735, 783, 867
HaeII RGCGCY 1 cut(s) 1023
HaeIII GGCC 1 cut(s) 385
HapII CCGG 3 cut(s) 99, 123, 638
HgaI GACGC 3 cut(s) 557, 648, 1096
HhaI GCGC 2 cut(s) 727, 1022
Hin1I GRCGYC 2 cut(s) 568, 1088
Hin1II CATG 4 cut(s) 30, 110, 116, 886
Hin6I GCGC 2 cut(s) 725, 1020
HinP1I GCGC 2 cut(s) 725, 1020
HindIII AAGCTT 5 cut(s) 296, 693, 746, 855, 1220
HinfI GANTC 7 cut(s) 419, 620, 817, 827, 875, 940, 1153
HpaII CCGG 3 cut(s) 99, 123, 638
HphI GGTGA 2 cut(s) 563, 979
Hpy166II GTNNAC 4 cut(s) 38, 380, 554, 1072
Hpy188I TCNGA 6 cut(s) 68, 140, 180, 250, 337, 424
Hpy188III TCNNGA 7 cut(s) 163, 407, 526, 638, 752, 1187, 1216
Hpy8I GTNNAC 4 cut(s) 38, 380, 554, 1072
Hpy99I CGWCG 2 cut(s) 573, 1090
HpyAV CCTTC 4 cut(s) 780, 1052, 1142, 1156
HpyCH4III ACNGT 3 cut(s) 402, 613, 1120
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 5 cut(s) 464, 607, 946, 1102, 1183
HpyF10VI GCNNNNNNNGC 5 cut(s) 508, 692, 731, 863, 1189
HpyF3I CTNAG 8 cut(s) 177, 193, 423, 435, 810, 870, 1092, 1188
HpySE526I ACGT 1 cut(s) 924
Hsp92I GRCGYC 2 cut(s) 568, 1088
Hsp92II CATG 4 cut(s) 30, 110, 116, 886
HspAI GCGC 2 cut(s) 725, 1020
Kpn2I TCCGGA 1 cut(s) 637
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Ksp22I TGATCA 2 cut(s) 279, 846
Kzo9I GATC 3 cut(s) 279, 846, 1000
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 4 cut(s) 670, 721, 769, 853
LweI GCATC 5 cut(s) 712, 769, 945, 1021, 1192
MaeI CTAG 3 cut(s) 45, 564, 1157
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 115, 660, 925
MalI GATC 3 cut(s) 281, 848, 1002
MboI GATC 3 cut(s) 279, 846, 1000
MboII GAAGA 8 cut(s) 15, 122, 247, 263, 357, 500, 826, 905
MflI RGATCY 1 cut(s) 1000
MhlI GDGCHC 3 cut(s) 73, 1056, 1194
MluCI AATT 2 cut(s) 62, 546
MlyI GAGTC 1 cut(s) 1162
MmeI TCCRAC 2 cut(s) 903, 1104
Mph1103I ATGCAT 1 cut(s) 1185
MroI TCCGGA 1 cut(s) 637
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 1 cut(s) 978
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 197, 542
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 3 cut(s) 99, 123, 638
MspR9I CCNGG 1 cut(s) 1044
MvaI CCWGG 1 cut(s) 1044
MwoI GCNNNNNNNGC 5 cut(s) 508, 692, 731, 863, 1189
NaeI GCCGGC 1 cut(s) 100
NdeII GATC 3 cut(s) 279, 846, 1000
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 4 cut(s) 30, 110, 116, 886
NlaIV GGNNCC 2 cut(s) 70, 1002
NmuCI GTSAC 2 cut(s) 115, 660
NsiI ATGCAT 1 cut(s) 1185
PasI CCCWGGG 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 1203
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 6 cut(s) 419, 620, 817, 827, 875, 940
PkrI GCNGC 4 cut(s) 685, 736, 784, 868
PleI GAGTC 1 cut(s) 1161
PpsI GAGTC 1 cut(s) 1161
Ppu21I YACGTR 1 cut(s) 925
Psp124BI GAGCTC 2 cut(s) 1056, 1194
Psp6I CCWGG 1 cut(s) 1042
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 2 cut(s) 70, 1002
PstI CTGCAG 1 cut(s) 948
PstNI CAGNNNCTG 1 cut(s) 952
PsuI RGATCY 1 cut(s) 1000
PvuII CAGCTG 2 cut(s) 197, 542
RsaI GTAC 2 cut(s) 690, 923
RsaNI GTAC 2 cut(s) 689, 922
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 2 cut(s) 1056, 1194
SaqAI TTAA 1 cut(s) 978
SatI GCNGC 4 cut(s) 684, 735, 783, 867
Sau3AI GATC 3 cut(s) 279, 846, 1000
SchI GAGTC 1 cut(s) 1162
ScrFI CCNGG 1 cut(s) 1044
SduI GDGCHC 3 cut(s) 73, 1056, 1194
SfaNI GCATC 5 cut(s) 712, 769, 945, 1021, 1192
SfcI CTRYAG 3 cut(s) 678, 787, 944
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 4 cut(s) 161, 473, 977, 1214
SmoI CTYRAG 4 cut(s) 161, 473, 977, 1214
SnaBI TACGTA 1 cut(s) 925
Sse9I AATT 2 cut(s) 62, 546
SsiI CCGC 1 cut(s) 737
SspMI CTAG 3 cut(s) 45, 564, 1157
SstI GAGCTC 2 cut(s) 1056, 1194
StyD4I CCNGG 1 cut(s) 1042
TaaI ACNGT 3 cut(s) 402, 613, 1120
TaiI ACGT 1 cut(s) 927
TaqI TCGA 3 cut(s) 457, 1056, 1206
TasI AATT 2 cut(s) 62, 546
TatI WGTACW 1 cut(s) 688
TfiI GAWTC 6 cut(s) 419, 620, 817, 827, 875, 940
Tru1I TTAA 1 cut(s) 978
Tru9I TTAA 1 cut(s) 978
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 115, 660
TseI GCWGC 4 cut(s) 683, 734, 782, 866
Tsp45I GTSAC 2 cut(s) 115, 660
TspDTI ATGAA 8 cut(s) 15, 101, 443, 455, 501, 758, 902, 1127
TspRI CASTG 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 977
XapI RAATTY 1 cut(s) 62
XmiI GTMKAC 2 cut(s) 379, 1071
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 3 cut(s) 45, 564, 1157
Zsp2I ATGCAT 1 cut(s) 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.