MD08G1174600.v1.1

protein At4g37920, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0014976
Physical Location & Seq
Reverse (-)
21210588 .. 21213938
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1174600.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGAGGTTTCCACCGCCACCCTCCAACCGTCTTGTTCTTTCCCACTCAGAGCCCCTAGACCCGCCACCAGAGAACGCGTCTCTTCTCTCTCCTCCATCAGATCCTCCCCTAAATCTATCTCCCTATCTTATAGCATCACCAAAGGTTGTGACTTAGTAGTTAGAGAACCAGTTAAGTTACGGTGGTCCTCTGTTGTTGCTGCTACGGTTGGTGATACAACTGCAGTGCCAAATAGTTGCTCTAGTGGAGAAGAGTTGCCCGTTTCTGATTCTTCTAATCCCATATCGGTGGAAGATCAGCCCAGTGGAAATGGTGAGAAAGGGGAAGAGAAAGGTGGGATTGGGGGATTGGATGACCACAAGATGACCCGAATATGTGACAAGCTTATTGAGGTTTTCTTGGTTGACAAGCCCACTCCAACTGACTGGAGAAGATTATTAGCTTTCAGTAAGGAATGGGACGATATCCGGCCTCATTTCTATACACGGTGTCAGGACCGTGCAGATGCTGAGGATGATCCTGGAATGAAGCATAAGCTACTGCGGCTTGGACGGAAATTGAAAGAGATTGATGAAGATGTGCAAGGACACAATGAACTTCTTAAAGTCGTTAGAGGGGCTCAATCAGAAATTAGTGAAATTGTTTCCAGACGCCGCAAAGATTTCACTCAAGAATTTTTTGTGCATCTCCACACTGTTGCTGAATCCTATTACAACAATCCGACAGAGCAAACTGCTTTGGCAAGTATTGGAAATATGTGCTTGGCTGCTGTGCAAGCATATGATTCTGCAACCGAAAGCATTGAAGCACTGAATGCGGCAGAGCTGAAATTTCAAGATATTATCGACTCTCCAACTGTTGATGCGGCTTGTAGGAAGATAGATCACTTGGCTGAGAAAAATCAACTCGACTCAGCATTGGTGATGATGATCACAAAAGCATGGTCAGCTGCCAAAGAGTCGAGCATGACGAAGGATGAGGTAAAGGACGTACTTTATCATTTGTACGTGACTGCAAGAGGTAATCTTCAGAGACTCATGCCAAAAGAAATTCGGATACTTAAGTATCTTCTCACAATTGAGGATCCTGAGGAGCGTCTGGCCGCCTTACACGATGCATTTACCCCAGGAGAGGAACTTGAAGGGACGGATGTAGATAACCTTTTCACGACCCCGGTGCAGCTTCACACCTGGATGAAGGCTATTGTGGACGCTTACCATTTCAGCCAGGAAGGCACTCTAATAAGGGAAGCAAGAGACCTCATGAATCCAAAGATCATTCAAAAAATGGAGGAGCTGAAGAAGTTAGTTGAAAACAAGTTCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

443

Amino Acids

49.58

Weight (kDa)

5.39

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36320
fragaria_vesca FvH4_5g38330 FvH4_5g38330 FvH4_5g38330
malus_domestica MD08G1174600.v1.1 MD15G1361200.v1.1
prunus_persica Prupe.1G508600_v2.0.a1 Prupe.1G508600_v2.0.a1
pyrus_communis pycom08g14960
rosa_chinensis RchiOBHm_Chr7g0240351
rosa_multiflora Rmu_sc0038179.1_g000001
rosa_roxburghii Rroxscaffold_3G00220200
rosa_samantha Rh7AG489300 Rh7BG462300 Rh7CG505600
rosa_wichuraiana Rw7G040940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AciI CCGC 7 cut(s) 15, 63, 544, 655, 818, 866, 1104
AclWI GGATC 4 cut(s) 96, 512, 1079, 1092
AcoI YGGCCR 1 cut(s) 1101
AcsI RAATTY 3 cut(s) 674, 830, 1050
AcuI CTGAAG 2 cut(s) 1013, 1319
AcyI GRCGYC 1 cut(s) 652
AfaI GTAC 2 cut(s) 993, 1007
AfiI CCNNNNNNNGG 1 cut(s) 1132
AflII CTTAAG 1 cut(s) 1061
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 6 cut(s) 562, 806, 836, 1142, 1283, 1313
AjnI CCWGG 4 cut(s) 520, 1126, 1190, 1227
AluBI AGCT 7 cut(s) 385, 443, 538, 826, 950, 1183, 1297
AluI AGCT 7 cut(s) 385, 443, 538, 826, 950, 1183, 1297
Alw26I GTCTC 3 cut(s) 85, 1027, 1251
AlwI GGATC 4 cut(s) 96, 512, 1079, 1092
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 2 cut(s) 470, 1101
ApeKI GCWGC 4 cut(s) 200, 767, 950, 1180
ApoI RAATTY 3 cut(s) 674, 830, 1050
ArsI GACNNNNNNTTYG 2 cut(s) 929, 961
AspS9I GGNCC 2 cut(s) 186, 496
AsuC2I CCSGG 1 cut(s) 1175
AsuHPI GGTGA 4 cut(s) 130, 224, 326, 934
AvaII GGWCC 2 cut(s) 186, 496
AxyI CCTNAGG 1 cut(s) 1089
BaeI ACNNNNGTAYC 4 cut(s) 1049, 1049, 1082, 1082
BamHI GGATCC 1 cut(s) 1084
BanII GRGCYC 2 cut(s) 55, 622
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 4 cut(s) 187, 754, 937, 1192
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 1159, 1193
BciT130I CCWGG 4 cut(s) 522, 1128, 1192, 1229
BciVI GTATCC 1 cut(s) 1050
BclI TGATCA 1 cut(s) 930
BcnI CCSGG 1 cut(s) 1175
BcoDI GTCTC 3 cut(s) 85, 1027, 1251
BfaI CTAG 2 cut(s) 57, 243
BfmI CTRYAG 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 1061
BfuI GTATCC 1 cut(s) 1050
BglI GCCNNNNNGGC 1 cut(s) 1233
BisI GCNGC 9 cut(s) 201, 545, 655, 768, 819, 867, 951, 1104, 1181
BlsI GCNGC 9 cut(s) 202, 546, 656, 769, 820, 868, 952, 1105, 1182
Bme1390I CCNGG 5 cut(s) 522, 1128, 1175, 1192, 1229
Bme18I GGWCC 2 cut(s) 186, 496
BmgT120I GGNCC 2 cut(s) 186, 496
BmiI GGNNCC 1 cut(s) 1086
BmrFI CCNGG 5 cut(s) 522, 1128, 1175, 1192, 1229
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 5 cut(s) 144, 496, 694, 853, 1105
BmuI ACTGGG 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 448
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 1175
BsaAI YACGTR 1 cut(s) 1009
BsaBI GATNNNNATC 1 cut(s) 929
BsaHI GRCGYC 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 1251
BsaJI CCNNGG 2 cut(s) 1126, 1173
Bsc4I CCNNNNNNNGG 1 cut(s) 1132
Bse1I ACTGG 3 cut(s) 170, 303, 431
Bse21I CCTNAGG 1 cut(s) 1089
Bse8I GATNNNNATC 1 cut(s) 929
BseBI CCWGG 4 cut(s) 522, 1128, 1192, 1229
BseDI CCNNGG 2 cut(s) 1126, 1173
BseGI GGATG 5 cut(s) 358, 520, 982, 1156, 1200
BseJI GATNNNNATC 1 cut(s) 929
BseLI CCNNNNNNNGG 1 cut(s) 1132
BseMII CTCAG 5 cut(s) 61, 501, 885, 927, 1080
BseNI ACTGG 3 cut(s) 170, 303, 431
BseRI GAGGAG 3 cut(s) 82, 1106, 1307
BseXI GCAGC 4 cut(s) 187, 754, 937, 1192
BsgI GTGCAG 2 cut(s) 522, 1199
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 472, 1103
BsiSI CCGG 2 cut(s) 469, 1175
BslFI GGGAC 2 cut(s) 473, 1159
BslI CCNNNNNNNGG 1 cut(s) 1132
BsmAI GTCTC 3 cut(s) 85, 1027, 1251
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 2 cut(s) 473, 1159
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 2 cut(s) 472, 1103
Bso31I GGTCTC 1 cut(s) 1251
Bsp1286I GDGCHC 2 cut(s) 55, 622
Bsp143I GATC 7 cut(s) 101, 295, 517, 883, 930, 1084, 1275
BspACI CCGC 7 cut(s) 15, 63, 544, 655, 818, 866, 1104
BspANI GGCC 2 cut(s) 472, 1103
BspCNI CTCAG 5 cut(s) 60, 502, 886, 926, 1081
BspFNI CGCG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 1263
BspLI GGNNCC 1 cut(s) 1086
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 4 cut(s) 96, 512, 1079, 1092
BspTI CTTAAG 1 cut(s) 1061
BspTNI GGTCTC 1 cut(s) 1251
BsrI ACTGG 3 cut(s) 170, 303, 431
BssECI CCNNGG 2 cut(s) 1126, 1173
BssMI GATC 7 cut(s) 101, 295, 517, 883, 930, 1084, 1275
BssNI GRCGYC 1 cut(s) 652
Bst2UI CCWGG 4 cut(s) 522, 1128, 1192, 1229
Bst4CI ACNGT 7 cut(s) 30, 183, 208, 489, 500, 697, 859
Bst6I CTCTTC 3 cut(s) 88, 246, 321
BstACI GRCGYC 1 cut(s) 652
BstAFI CTTAAG 1 cut(s) 1061
BstAPI GCANNNNNTGC 1 cut(s) 815
BstBAI YACGTR 1 cut(s) 1009
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 6 cut(s) 47, 154, 510, 894, 913, 1089
BstF5I GGATG 5 cut(s) 358, 520, 982, 1156, 1200
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 7 cut(s) 104, 298, 520, 886, 933, 1087, 1278
BstMAI GTCTC 3 cut(s) 85, 1027, 1251
BstMBI GATC 7 cut(s) 101, 295, 517, 883, 930, 1084, 1275
BstMWI GCNNNNNNNGC 5 cut(s) 544, 776, 815, 947, 1233
BstNI CCWGG 4 cut(s) 522, 1128, 1192, 1229
BstSCI CCNGG 5 cut(s) 520, 1126, 1173, 1190, 1227
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 4 cut(s) 187, 754, 937, 1192
BstX2I RGATCY 2 cut(s) 101, 1084
BstXI CCANNNNNNTGG 2 cut(s) 289, 426
BstYI RGATCY 2 cut(s) 101, 1084
Bsu36I CCTNAGG 1 cut(s) 1089
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 2 cut(s) 472, 1103
BtsCI GGATG 5 cut(s) 358, 520, 982, 1156, 1200
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 4 cut(s) 231, 310, 693, 809
Cac8I GCNNGC 1 cut(s) 777
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 1263
Cfr13I GGNCC 2 cut(s) 186, 496
CseI GACGC 4 cut(s) 67, 660, 1085, 1220
Csp6I GTAC 2 cut(s) 992, 1006
CviAII CATG 4 cut(s) 942, 967, 1039, 1264
CviQI GTAC 2 cut(s) 992, 1006
DdeI CTNAG 6 cut(s) 47, 154, 510, 894, 913, 1089
DpnI GATC 7 cut(s) 103, 297, 519, 885, 932, 1086, 1277
DpnII GATC 7 cut(s) 101, 295, 517, 883, 930, 1084, 1275
EaeI YGGCCR 1 cut(s) 1101
Eam1104I CTCTTC 3 cut(s) 88, 246, 321
EarI CTCTTC 3 cut(s) 88, 246, 321
Eco24I GRGCYC 2 cut(s) 55, 622
Eco31I GGTCTC 1 cut(s) 1251
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 186, 496
Eco57I CTGAAG 2 cut(s) 1013, 1319
Eco81I CCTNAGG 1 cut(s) 1089
EcoRII CCWGG 4 cut(s) 520, 1126, 1190, 1227
EcoRV GATATC 1 cut(s) 466
EcoT22I ATGCAT 1 cut(s) 1120
EcoT38I GRGCYC 2 cut(s) 55, 622
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 4 cut(s) 945, 970, 1042, 1267
FaqI GGGAC 2 cut(s) 473, 1159
FatI CATG 4 cut(s) 941, 966, 1038, 1263
FauI CCCGC 1 cut(s) 70
FauNDI CATATG 1 cut(s) 781
FbaI TGATCA 1 cut(s) 930
Fnu4HI GCNGC 9 cut(s) 201, 545, 655, 768, 819, 867, 951, 1104, 1181
FokI GGATG 5 cut(s) 365, 527, 989, 1163, 1207
FriOI GRGCYC 2 cut(s) 55, 622
Fsp4HI GCNGC 9 cut(s) 201, 545, 655, 768, 819, 867, 951, 1104, 1181
FspBI CTAG 2 cut(s) 57, 243
GluI GCNGC 9 cut(s) 201, 545, 655, 768, 819, 867, 951, 1104, 1181
GsuI CTGGAG 1 cut(s) 448
HaeIII GGCC 2 cut(s) 472, 1103
HapII CCGG 2 cut(s) 469, 1175
HgaI GACGC 4 cut(s) 67, 660, 1085, 1220
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 4 cut(s) 945, 970, 1042, 1267
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 8 cut(s) 269, 704, 785, 848, 911, 959, 1035, 1267
HpaII CCGG 2 cut(s) 469, 1175
HphI GGTGA 4 cut(s) 130, 224, 326, 934
Hpy166II GTNNAC 2 cut(s) 406, 1210
Hpy188I TCNGA 7 cut(s) 50, 101, 268, 628, 723, 1032, 1056
Hpy188III TCNNGA 7 cut(s) 494, 648, 671, 836, 1088, 1168, 1264
Hpy8I GTNNAC 2 cut(s) 406, 1210
HpyAV CCTTC 4 cut(s) 967, 1136, 1192, 1226
HpyCH4III ACNGT 7 cut(s) 30, 183, 208, 489, 500, 697, 859
HpyCH4IV ACGT 2 cut(s) 990, 1008
HpyCH4V TGCA 9 cut(s) 224, 503, 583, 685, 775, 791, 1016, 1118, 1180
HpyF10VI GCNNNNNNNGC 5 cut(s) 544, 776, 815, 947, 1233
HpyF3I CTNAG 6 cut(s) 47, 154, 510, 894, 913, 1089
HpySE526I ACGT 2 cut(s) 990, 1008
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 4 cut(s) 945, 970, 1042, 1267
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 7 cut(s) 101, 295, 517, 883, 930, 1084, 1275
LmnI GCTCC 2 cut(s) 1093, 1294
Lsp1109I GCAGC 4 cut(s) 187, 754, 937, 1192
LweI GCATC 5 cut(s) 144, 496, 694, 853, 1105
MaeI CTAG 2 cut(s) 57, 243
MaeII ACGT 2 cut(s) 990, 1008
MaeIII GTNAC 4 cut(s) 149, 177, 377, 1009
MalI GATC 7 cut(s) 103, 297, 519, 885, 932, 1086, 1277
MboI GATC 7 cut(s) 101, 295, 517, 883, 930, 1084, 1275
MfeI CAATTG 1 cut(s) 1077
MflI RGATCY 2 cut(s) 101, 1084
MhlI GDGCHC 2 cut(s) 55, 622
MluCI AATT 7 cut(s) 557, 630, 639, 674, 830, 1050, 1077
MluI ACGCGT 1 cut(s) 76
MlyI GAGTC 4 cut(s) 842, 905, 968, 1029
MmeI TCCRAC 4 cut(s) 49, 443, 746, 878
Mph1103I ATGCAT 1 cut(s) 1120
MseI TTAA 3 cut(s) 174, 603, 1062
MslI CAYNNNNRTG 2 cut(s) 287, 1193
MspA1I CMGCKG 1 cut(s) 950
MspCI CTTAAG 1 cut(s) 1061
MspI CCGG 2 cut(s) 469, 1175
MspR9I CCNGG 5 cut(s) 522, 1128, 1175, 1192, 1229
MunI CAATTG 1 cut(s) 1077
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 4 cut(s) 522, 1128, 1192, 1229
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 5 cut(s) 544, 776, 815, 947, 1233
NciI CCSGG 1 cut(s) 1175
NdeI CATATG 1 cut(s) 781
NdeII GATC 7 cut(s) 101, 295, 517, 883, 930, 1084, 1275
NlaIII CATG 4 cut(s) 945, 970, 1042, 1267
NlaIV GGNNCC 1 cut(s) 1086
NmuCI GTSAC 3 cut(s) 149, 377, 1009
NsiI ATGCAT 1 cut(s) 1120
PagI TCATGA 1 cut(s) 1263
PcsI WCGNNNNNNNCGW 1 cut(s) 968
PctI GAATGC 1 cut(s) 820
PfeI GAWTC 4 cut(s) 269, 704, 785, 1267
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 9 cut(s) 202, 546, 656, 769, 820, 868, 952, 1105, 1182
PleI GAGTC 4 cut(s) 842, 905, 967, 1029
PpsI GAGTC 4 cut(s) 842, 905, 967, 1029
Ppu21I YACGTR 1 cut(s) 1009
Psp6I CCWGG 4 cut(s) 520, 1126, 1190, 1227
PspGI CCWGG 4 cut(s) 520, 1126, 1190, 1227
PspN4I GGNNCC 1 cut(s) 1086
PspPI GGNCC 2 cut(s) 186, 496
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 2 cut(s) 101, 1084
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 2 cut(s) 993, 1007
RsaNI GTAC 2 cut(s) 992, 1006
RseI CAYNNNNRTG 2 cut(s) 287, 1193
SaqAI TTAA 3 cut(s) 174, 603, 1062
SatI GCNGC 9 cut(s) 201, 545, 655, 768, 819, 867, 951, 1104, 1181
Sau3AI GATC 7 cut(s) 101, 295, 517, 883, 930, 1084, 1275
Sau96I GGNCC 2 cut(s) 186, 496
SchI GAGTC 4 cut(s) 842, 905, 968, 1029
ScrFI CCNGG 5 cut(s) 522, 1128, 1175, 1192, 1229
SduI GDGCHC 2 cut(s) 55, 622
SfaNI GCATC 5 cut(s) 144, 496, 694, 853, 1105
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 2 cut(s) 186, 496
SmiMI CAYNNNNRTG 2 cut(s) 287, 1193
SmlI CTYRAG 2 cut(s) 669, 1061
SmoI CTYRAG 2 cut(s) 669, 1061
Sse9I AATT 7 cut(s) 557, 630, 639, 674, 830, 1050, 1077
SsiI CCGC 7 cut(s) 15, 63, 544, 655, 818, 866, 1104
SspMI CTAG 2 cut(s) 57, 243
StyD4I CCNGG 5 cut(s) 520, 1126, 1173, 1190, 1227
TaaI ACNGT 7 cut(s) 30, 183, 208, 489, 500, 697, 859
TaiI ACGT 2 cut(s) 993, 1011
TaqI TCGA 3 cut(s) 846, 909, 962
TasI AATT 7 cut(s) 557, 630, 639, 674, 830, 1050, 1077
TauI GCSGC 5 cut(s) 547, 657, 821, 869, 1106
TfiI GAWTC 4 cut(s) 269, 704, 785, 1267
Tru1I TTAA 3 cut(s) 174, 603, 1062
Tru9I TTAA 3 cut(s) 174, 603, 1062
TscAI CASTG 4 cut(s) 231, 310, 700, 816
TseFI GTSAC 3 cut(s) 149, 377, 1009
TseI GCWGC 4 cut(s) 200, 767, 950, 1180
Tsp45I GTSAC 3 cut(s) 149, 377, 1009
TspDTI ATGAA 5 cut(s) 542, 588, 609, 1211, 1280
TspGWI ACGGA 2 cut(s) 568, 1163
TspRI CASTG 4 cut(s) 231, 310, 700, 816
Vha464I CTTAAG 1 cut(s) 1061
VpaK11BI GGWCC 2 cut(s) 186, 496
XapI RAATTY 3 cut(s) 674, 830, 1050
XspI CTAG 2 cut(s) 57, 243
Zsp2I ATGCAT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.