FvH4_5g38330

protein At4g37920, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014976
Physical Location & Seq
Forward (+)
28347524 .. 28351061
3538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38330.t2

Sequence Viewer

Length: 1290 bp
ATGGAGGTTTCTACTCTCCAACCCTCTTGCTCTTTCCCGCTAAGAGCCCCTAAAACAATCACCAGCGACCGCAGCTCTTCTCTATCTTTCATCACTACTTCGTCTAGAAACTTCTCCCTATCCTCTAAAACCACCAAAGGTTTTCACATACTAGTTAAACCGGCAAGGTTGCGGCGGCTATCAGTTGTTTCAGCTGTTGTTGGTGATAAAACTAGAGTGCCAAATGATTGTTCTAGTGAAGAAGAGTTGTCTGGTTCTGAAGCGGGAGGAAATGGTGTAAAGGGAGAAGAGGAAGGTGGTGTTGGGTCTTTGGATGACCACAAAATGACCCGGATATGTGATAAGCTTATTGAGGTTTTCATGGTTGACAAGCCCACTACAACTGACTGGAGGAGATTATTGGCTTTCAGTAGGGAATGGGATGATATCAGGCCTCATTTCTTTAAGCGTTGTCAGGACCGAGCAGATGTTGAGGATGATCCTGGAATGAAGCATAAGATTCTTCGGCTTGGGCGGAAATTGAAAGAGGTAGATGAAGATGTGCAAAGACACAATGAACTGCTTAAAGTTGTTAGAGGGGCTCCATCTGATATTAGTGACATAGTTGCCAGACGCCGCAAAGATTTCACAAAAGAATTTTTTGTGTATCTTCACACAGTTTCTGAGTCCTATTATGAGAACTTAGAAGAGCAAAATGCTTTGGCAAGCATTGGAAATACATGCTTGGCAGCTGTACAAGCGTATGATTCTGCGACTGAAAGCATTGAAGCACTGAATGCCGCAGAGTTGAAATTTCAAGATATTATCGATTCTCCTTCTGTTGATGCTGCTTGTAGGAAGATAGACAACTTGGCTGAGAAAAATCAACTTGACTCAACATTGGTTATGATGATTACAAAAGCTTGGTCAGCTGCCAAGGAATCGAGCATGACGAAAGATGAGGTAAAAGATGTATTATATCATTTGTATGTGACTGCAAGAGGTAATCTTCAGAAGCTCATGCCAAAAGAAATTCGGATAGTTAAGTATCTGCTCACAATTGACGATCCTGAGGAGCGCCTGTTGGCCTTACAAGATGCATTTACCCCGGGAGAGGAACTTGAAGGGAAGGATGTAGATAACCTCTACACGACCCCTGAGAAGCTTCACACCTGGATAAAGGCTGTTGTGGATGCTTATCATTTGAGCAGGGAAGGTACTCTAATAAGAGAAGCAAGGGACCTGATGAATCCAAAGATCATCAAAAAACTGGAGGACCTGAAGAAGGTAGTTGAAAAAAAGTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

430

Amino Acids

48.52

Weight (kDa)

5.96

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36320
fragaria_vesca FvH4_5g38330 FvH4_5g38330 FvH4_5g38330
malus_domestica MD08G1174600.v1.1 MD15G1361200.v1.1
prunus_persica Prupe.1G508600_v2.0.a1 Prupe.1G508600_v2.0.a1
pyrus_communis pycom08g14960
rosa_chinensis RchiOBHm_Chr7g0240351
rosa_multiflora Rmu_sc0038179.1_g000001
rosa_roxburghii Rroxscaffold_3G00220200
rosa_samantha Rh7AG489300 Rh7BG462300 Rh7CG505600
rosa_wichuraiana Rw7G040940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 38, 70, 172, 175, 263, 514, 616, 780
AclWI GGATC 2 cut(s) 473, 1040
AcsI RAATTY 3 cut(s) 635, 791, 1011
AcuI CTGAAG 3 cut(s) 279, 974, 1280
AcyI GRCGYC 1 cut(s) 613
AfaI GTAC 2 cut(s) 735, 1198
AfiI CCNNNNNNNGG 2 cut(s) 1093, 1264
AgsI TTSAA 6 cut(s) 523, 767, 790, 797, 1103, 1274
AhlI ACTAGT 1 cut(s) 151
AjnI CCWGG 2 cut(s) 481, 1151
AjuI GAANNNNNNNTTGG 4 cut(s) 214, 246, 285, 317
AluBI AGCT 8 cut(s) 75, 194, 346, 731, 902, 911, 997, 1144
AluI AGCT 8 cut(s) 75, 194, 346, 731, 902, 911, 997, 1144
AlwI GGATC 2 cut(s) 473, 1040
AlwNI CAGNNNCTG 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 1087
AoxI GGCC 2 cut(s) 431, 1065
ApeKI GCWGC 4 cut(s) 72, 728, 827, 911
ApoI RAATTY 3 cut(s) 635, 791, 1011
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
AspLEI GCGC 1 cut(s) 1059
AspS9I GGNCC 3 cut(s) 457, 1219, 1255
AsuC2I CCSGG 3 cut(s) 331, 1088, 1089
AsuHPI GGTGA 2 cut(s) 52, 215
AvaI CYCGRG 1 cut(s) 1087
AvaII GGWCC 3 cut(s) 457, 1219, 1255
AxyI CCTNAGG 1 cut(s) 1050
BanII GRGCYC 2 cut(s) 49, 583
BbvI GCAGC 4 cut(s) 84, 740, 814, 898
BccI CCATC 1 cut(s) 592
BciT130I CCWGG 2 cut(s) 483, 1153
BcnI CCSGG 3 cut(s) 331, 1088, 1089
BcuI ACTAGT 1 cut(s) 151
BfaI CTAG 4 cut(s) 105, 152, 213, 234
BfoI RGCGCY 1 cut(s) 1060
BisI GCNGC 8 cut(s) 73, 173, 176, 616, 729, 780, 828, 912
BlsI GCNGC 8 cut(s) 74, 174, 177, 617, 730, 781, 829, 913
Bme1390I CCNGG 5 cut(s) 331, 483, 1088, 1089, 1153
Bme18I GGWCC 3 cut(s) 457, 1219, 1255
BmeT110I CYCGRG 1 cut(s) 1087
BmgT120I GGNCC 3 cut(s) 457, 1219, 1255
BmiI GGNNCC 2 cut(s) 582, 1220
BmrFI CCNGG 5 cut(s) 331, 483, 1088, 1089, 1153
BmsI GCATC 3 cut(s) 814, 1066, 1162
BpmI CTGGAG 2 cut(s) 409, 1271
BpuMI CCSGG 3 cut(s) 331, 1088, 1089
Bsa29I ATCGAT 1 cut(s) 807
BsaBI GATNNNNATC 1 cut(s) 1176
BsaHI GRCGYC 1 cut(s) 613
BsaJI CCNNGG 3 cut(s) 915, 1086, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 1046, 1076
Bsc4I CCNNNNNNNGG 2 cut(s) 1093, 1264
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 392, 1254
Bse21I CCTNAGG 1 cut(s) 1050
Bse8I GATNNNNATC 1 cut(s) 1176
BseBI CCWGG 2 cut(s) 483, 1153
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 3 cut(s) 915, 1086, 1087
BseGI GGATG 5 cut(s) 319, 427, 481, 1117, 1177
BseJI GATNNNNATC 1 cut(s) 1176
BseLI CCNNNNNNNGG 2 cut(s) 1093, 1264
BseMII CTCAG 4 cut(s) 654, 846, 1041, 1128
BseNI ACTGG 2 cut(s) 392, 1254
BseRI GAGGAG 2 cut(s) 406, 1067
BseXI GCAGC 4 cut(s) 84, 740, 814, 898
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 433, 1067
BshVI ATCGAT 1 cut(s) 807
BsiEI CGRYCG 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 1087
BsiSI CCGG 3 cut(s) 161, 331, 1088
BslFI GGGAC 1 cut(s) 1232
BslI CCNNNNNNNGG 2 cut(s) 1093, 1264
BsmFI GGGAC 1 cut(s) 1232
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 2 cut(s) 433, 1067
BsoBI CYCGRG 1 cut(s) 1087
Bsp1286I GDGCHC 2 cut(s) 49, 583
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 3 cut(s) 478, 1045, 1236
BspACI CCGC 8 cut(s) 38, 70, 172, 175, 263, 514, 616, 780
BspANI GGCC 2 cut(s) 433, 1067
BspCNI CTCAG 4 cut(s) 655, 847, 1042, 1129
BspDI ATCGAT 1 cut(s) 807
BspLI GGNNCC 2 cut(s) 582, 1220
BspPI GGATC 2 cut(s) 473, 1040
BspQI GCTCTTC 2 cut(s) 82, 681
BsrFI RCCGGY 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 2 cut(s) 392, 1254
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 915, 1086, 1087
BssMI GATC 3 cut(s) 478, 1045, 1236
BssNI GRCGYC 1 cut(s) 613
BssT1I CCWWGG 1 cut(s) 915
Bst2UI CCWGG 2 cut(s) 483, 1153
Bst4CI ACNGT 1 cut(s) 658
Bst6I CTCTTC 4 cut(s) 82, 237, 282, 681
BstACI GRCGYC 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 733
BstC8I GCNNGC 1 cut(s) 706
BstDEI CTNAG 6 cut(s) 41, 663, 682, 855, 1050, 1137
BstENI CCTNNNNNAGG 1 cut(s) 1262
BstF5I GGATG 5 cut(s) 319, 427, 481, 1117, 1177
BstH2I RGCGCY 1 cut(s) 1060
BstHHI GCGC 1 cut(s) 1059
BstKTI GATC 3 cut(s) 481, 1048, 1239
BstMBI GATC 3 cut(s) 478, 1045, 1236
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 72, 737, 776, 908
BstNI CCWGG 2 cut(s) 483, 1153
BstNSI RCATGY 1 cut(s) 723
BstSCI CCNGG 5 cut(s) 329, 481, 1086, 1087, 1151
BstV1I GCAGC 4 cut(s) 84, 740, 814, 898
Bsu15I ATCGAT 1 cut(s) 807
Bsu36I CCTNAGG 1 cut(s) 1050
BsuRI GGCC 2 cut(s) 433, 1067
BsuTUI ATCGAT 1 cut(s) 807
BtsCI GGATG 5 cut(s) 319, 427, 481, 1117, 1177
BtsIMutI CAGTG 1 cut(s) 770
Cac8I GCNNGC 1 cut(s) 706
CaiI CAGNNNCTG 1 cut(s) 662
CfoI GCGC 1 cut(s) 1059
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 457, 1219, 1255
Cfr9I CCCGGG 1 cut(s) 1087
ClaI ATCGAT 1 cut(s) 807
CseI GACGC 1 cut(s) 621
Csp6I GTAC 2 cut(s) 734, 1197
CviAII CATG 4 cut(s) 361, 720, 928, 1000
CviQI GTAC 2 cut(s) 734, 1197
DdeI CTNAG 6 cut(s) 41, 663, 682, 855, 1050, 1137
DpnI GATC 3 cut(s) 480, 1047, 1238
DpnII GATC 3 cut(s) 478, 1045, 1236
Eam1104I CTCTTC 4 cut(s) 82, 237, 282, 681
EarI CTCTTC 4 cut(s) 82, 237, 282, 681
EciI GGCGGA 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 915
Eco147I AGGCCT 1 cut(s) 433
Eco24I GRGCYC 2 cut(s) 49, 583
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 3 cut(s) 457, 1219, 1255
Eco57I CTGAAG 3 cut(s) 279, 974, 1280
Eco81I CCTNAGG 1 cut(s) 1050
Eco88I CYCGRG 1 cut(s) 1087
EcoNI CCTNNNNNAGG 1 cut(s) 1262
EcoO109I RGGNCCY 2 cut(s) 1219, 1255
EcoRII CCWGG 2 cut(s) 481, 1151
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 915
EcoT22I ATGCAT 1 cut(s) 1081
EcoT38I GRGCYC 2 cut(s) 49, 583
ErhI CCWWGG 1 cut(s) 915
FaeI CATG 4 cut(s) 364, 723, 931, 1003
FaqI GGGAC 1 cut(s) 1232
FatI CATG 4 cut(s) 360, 719, 927, 999
FauI CCCGC 2 cut(s) 45, 256
Fnu4HI GCNGC 8 cut(s) 73, 173, 176, 616, 729, 780, 828, 912
FokI GGATG 5 cut(s) 326, 434, 488, 1124, 1184
FriOI GRGCYC 2 cut(s) 49, 583
Fsp4HI GCNGC 8 cut(s) 73, 173, 176, 616, 729, 780, 828, 912
FspBI CTAG 4 cut(s) 105, 152, 213, 234
GlaI GCGC 1 cut(s) 1058
GluI GCNGC 8 cut(s) 73, 173, 176, 616, 729, 780, 828, 912
GsuI CTGGAG 2 cut(s) 409, 1271
HaeII RGCGCY 1 cut(s) 1060
HaeIII GGCC 2 cut(s) 433, 1067
HapII CCGG 3 cut(s) 161, 331, 1088
HgaI GACGC 1 cut(s) 621
HhaI GCGC 1 cut(s) 1059
Hin1I GRCGYC 1 cut(s) 613
Hin1II CATG 4 cut(s) 364, 723, 931, 1003
Hin6I GCGC 1 cut(s) 1057
HinP1I GCGC 1 cut(s) 1057
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 3 cut(s) 344, 900, 1142
HinfI GANTC 7 cut(s) 499, 665, 746, 809, 872, 920, 1228
HpaII CCGG 3 cut(s) 161, 331, 1088
HphI GGTGA 2 cut(s) 52, 215
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 5 cut(s) 259, 589, 664, 993, 1017
Hpy188III TCNNGA 4 cut(s) 105, 455, 797, 1049
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 6 cut(s) 287, 825, 1097, 1102, 1187, 1258
HpyCH4III ACNGT 1 cut(s) 658
HpyCH4V TGCA 3 cut(s) 544, 977, 1079
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 737, 776, 908
HpyF3I CTNAG 6 cut(s) 41, 663, 682, 855, 1050, 1137
Hsp92I GRCGYC 1 cut(s) 613
Hsp92II CATG 4 cut(s) 364, 723, 931, 1003
HspAI GCGC 1 cut(s) 1057
Kzo9I GATC 3 cut(s) 478, 1045, 1236
LguI GCTCTTC 2 cut(s) 82, 681
LmnI GCTCC 2 cut(s) 586, 1054
Lsp1109I GCAGC 4 cut(s) 84, 740, 814, 898
LweI GCATC 3 cut(s) 814, 1066, 1162
MaeI CTAG 4 cut(s) 105, 152, 213, 234
MaeIII GTNAC 2 cut(s) 596, 970
MalI GATC 3 cut(s) 480, 1047, 1238
MboI GATC 3 cut(s) 478, 1045, 1236
MfeI CAATTG 1 cut(s) 1038
MhlI GDGCHC 2 cut(s) 49, 583
MluCI AATT 5 cut(s) 518, 635, 791, 1011, 1038
MlyI GAGTC 2 cut(s) 674, 866
MmeI TCCRAC 1 cut(s) 43
Mph1103I ATGCAT 1 cut(s) 1081
MseI TTAA 4 cut(s) 156, 444, 564, 1023
MslI CAYNNNNRTG 1 cut(s) 966
MspA1I CMGCKG 3 cut(s) 194, 731, 911
MspI CCGG 3 cut(s) 161, 331, 1088
MspR9I CCNGG 5 cut(s) 331, 483, 1088, 1089, 1153
MunI CAATTG 1 cut(s) 1038
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 2 cut(s) 483, 1153
MwoI GCNNNNNNNGC 4 cut(s) 72, 737, 776, 908
NciI CCSGG 3 cut(s) 331, 1088, 1089
NdeII GATC 3 cut(s) 478, 1045, 1236
NlaIII CATG 4 cut(s) 364, 723, 931, 1003
NlaIV GGNNCC 2 cut(s) 582, 1220
NmuCI GTSAC 2 cut(s) 596, 970
NsiI ATGCAT 1 cut(s) 1081
NspI RCATGY 1 cut(s) 723
PceI AGGCCT 1 cut(s) 433
PciSI GCTCTTC 2 cut(s) 82, 681
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PctI GAATGC 1 cut(s) 781
PfeI GAWTC 5 cut(s) 499, 746, 809, 920, 1228
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 8 cut(s) 74, 174, 177, 617, 730, 781, 829, 913
PleI GAGTC 2 cut(s) 673, 866
PpsI GAGTC 2 cut(s) 673, 866
PpuMI RGGWCCY 2 cut(s) 1219, 1255
Psp5II RGGWCCY 2 cut(s) 1219, 1255
Psp6I CCWGG 2 cut(s) 481, 1151
PspGI CCWGG 2 cut(s) 481, 1151
PspN4I GGNNCC 2 cut(s) 582, 1220
PspPI GGNCC 3 cut(s) 457, 1219, 1255
PspPPI RGGWCCY 2 cut(s) 1219, 1255
PstNI CAGNNNCTG 1 cut(s) 662
PvuII CAGCTG 3 cut(s) 194, 731, 911
RsaI GTAC 2 cut(s) 735, 1198
RsaNI GTAC 2 cut(s) 734, 1197
RseI CAYNNNNRTG 1 cut(s) 966
SapI GCTCTTC 2 cut(s) 82, 681
SaqAI TTAA 4 cut(s) 156, 444, 564, 1023
SatI GCNGC 8 cut(s) 73, 173, 176, 616, 729, 780, 828, 912
Sau3AI GATC 3 cut(s) 478, 1045, 1236
Sau96I GGNCC 3 cut(s) 457, 1219, 1255
SchI GAGTC 2 cut(s) 674, 866
ScrFI CCNGG 5 cut(s) 331, 483, 1088, 1089, 1153
SduI GDGCHC 2 cut(s) 49, 583
SfaNI GCATC 3 cut(s) 814, 1066, 1162
SinI GGWCC 3 cut(s) 457, 1219, 1255
SmaI CCCGGG 1 cut(s) 1089
SmiMI CAYNNNNRTG 1 cut(s) 966
SpeI ACTAGT 1 cut(s) 151
Sse9I AATT 5 cut(s) 518, 635, 791, 1011, 1038
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 8 cut(s) 38, 70, 172, 175, 263, 514, 616, 780
SspMI CTAG 4 cut(s) 105, 152, 213, 234
StuI AGGCCT 1 cut(s) 433
StyD4I CCNGG 5 cut(s) 329, 481, 1086, 1087, 1151
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 1 cut(s) 658
TaqI TCGA 2 cut(s) 807, 923
TaqII GACCGA 1 cut(s) 474
TasI AATT 5 cut(s) 518, 635, 791, 1011, 1038
TatI WGTACW 1 cut(s) 733
TauI GCSGC 4 cut(s) 175, 178, 618, 782
TfiI GAWTC 5 cut(s) 499, 746, 809, 920, 1228
Tru1I TTAA 4 cut(s) 156, 444, 564, 1023
Tru9I TTAA 4 cut(s) 156, 444, 564, 1023
TscAI CASTG 1 cut(s) 777
TseFI GTSAC 2 cut(s) 596, 970
TseI GCWGC 4 cut(s) 72, 728, 827, 911
Tsp45I GTSAC 2 cut(s) 596, 970
TspDTI ATGAA 6 cut(s) 79, 349, 503, 549, 570, 1241
TspMI CCCGGG 1 cut(s) 1087
TspRI CASTG 1 cut(s) 777
VpaK11BI GGWCC 3 cut(s) 457, 1219, 1255
XagI CCTNNNNNAGG 1 cut(s) 1262
XapI RAATTY 3 cut(s) 635, 791, 1011
XbaI TCTAGA 1 cut(s) 104
XceI RCATGY 1 cut(s) 723
XmaI CCCGGG 1 cut(s) 1087
XspI CTAG 4 cut(s) 105, 152, 213, 234
Zsp2I ATGCAT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.