MD15G1361200.v1.1

protein At4g37920, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014976
Physical Location & Seq
Reverse (-)
43466299 .. 43469721
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1361200.v1.1.491

Sequence Viewer

Length: 813 bp
ATGATCCGAGTATGTGACAACCTTATTGAGGTTTTTCTGGTTGACAAGCCCACTCCAACTGACTGGAGAAGATTATTAGCTTTCAGCAAGGAATGGGACGATATCCAACCTCATTTCTATAAGCAGTGTCAGGACCGTGCAGATACTGAGGATGATCCTGGAATGAAGCATGAGCTAGTACGGCTTGGACGGAAATTGAAAGAGGGATGGTTGATGAAGATGTGCAAAGACACAATGAATTTCTTTAAGTCGTTAGAGGGGCTCAATCAGAAATTAGTGAAATACTTTCCAGGCGTCGCAAAGATTTCACTCAAGAATTTTTTGTGCATCTCCACACTGTTGCCGAATCCTATTACGACAATCCAACAGAGCAAACTGCATATGATTCTGCAAAGCATTGAAGCACTGAATGCTGCAGAGTTGAAATTTCAAGATATTATCAACTCTCCTACTGTTGATGCCGCTTGTAGGAAGATCGATCACTTGGCTGAGAAAAATCAACTCGACTCAGCATTGGTGATGATGATCACAAAAGCTTGGTCAGCTGCCAAAGAGTTGAGCATGACGAAAGATGAGGTAAAGGACGTACTTTATCATATGTACGTCACCGCAAGAGGTAATCTTCAGAGATTCATGCCAAAAGAAATTTGGATACTTAAGTGTCTTCTCACAATTGAGGATCCTGAGGAGCTTCTGGCTGCCTTACATGATCTATCTACCCCAGGAGAGGAACTTGAAGGGACGGATGTTGATAACCTTTTCACAACCCCGTTGCAGCTGCACACCTGGATGAAGGCTATTGTGGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.05

Weight (kDa)

5.69

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36320
fragaria_vesca FvH4_5g38330 FvH4_5g38330 FvH4_5g38330
malus_domestica MD08G1174600.v1.1 MD15G1361200.v1.1
prunus_persica Prupe.1G508600_v2.0.a1 Prupe.1G508600_v2.0.a1
pyrus_communis pycom08g14960
rosa_chinensis RchiOBHm_Chr7g0240351
rosa_multiflora Rmu_sc0038179.1_g000001
rosa_roxburghii Rroxscaffold_3G00220200
rosa_samantha Rh7AG489300 Rh7BG462300 Rh7CG505600
rosa_wichuraiana Rw7G040940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 462, 609
AclWI GGATC 3 cut(s) 149, 674, 687
AcsI RAATTY 4 cut(s) 238, 316, 425, 645
AcuI CTGAAG 1 cut(s) 608
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 3 cut(s) 180, 588, 602
AfiI CCNNNNNNNGG 3 cut(s) 28, 468, 727
AflII CTTAAG 1 cut(s) 656
AgsI TTSAA 5 cut(s) 199, 401, 424, 431, 737
AjnI CCWGG 4 cut(s) 157, 289, 721, 785
AluBI AGCT 6 cut(s) 80, 175, 536, 545, 691, 778
AluI AGCT 6 cut(s) 80, 175, 536, 545, 691, 778
AlwI GGATC 3 cut(s) 149, 674, 687
AlwNI CAGNNNCTG 1 cut(s) 146
ApeKI GCWGC 5 cut(s) 413, 545, 698, 775, 778
ApoI RAATTY 4 cut(s) 238, 316, 425, 645
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 529, 598
AvaII GGWCC 1 cut(s) 133
AxyI CCTNAGG 1 cut(s) 684
BaeI ACNNNNGTAYC 2 cut(s) 644, 677
BamHI GGATCC 1 cut(s) 679
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 656
BbvI GCAGC 5 cut(s) 400, 532, 685, 765, 787
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 4 cut(s) 159, 291, 723, 787
BciVI GTATCC 1 cut(s) 645
BclI TGATCA 1 cut(s) 525
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 414
BfrI CTTAAG 1 cut(s) 656
BfuI GTATCC 1 cut(s) 645
BisI GCNGC 6 cut(s) 414, 462, 546, 699, 776, 779
BlsI GCNGC 6 cut(s) 415, 463, 547, 700, 777, 780
Bme1390I CCNGG 4 cut(s) 159, 291, 723, 787
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 681
BmrFI CCNGG 4 cut(s) 159, 291, 723, 787
BmsI GCATC 3 cut(s) 336, 448, 796
BpiI GAAGAC 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 721
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 468, 727
Bse1I ACTGG 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 684
Bse8I GATNNNNATC 1 cut(s) 524
BseBI CCWGG 4 cut(s) 159, 291, 723, 787
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 5 cut(s) 157, 212, 751, 795, 811
BseJI GATNNNNATC 1 cut(s) 524
BseLI CCNNNNNNNGG 3 cut(s) 28, 468, 727
BseMII CTCAG 4 cut(s) 138, 480, 522, 675
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 5 cut(s) 400, 532, 685, 765, 787
BsgI GTGCAG 2 cut(s) 159, 764
BshVI ATCGAT 1 cut(s) 477
BslFI GGGAC 2 cut(s) 110, 754
BslI CCNNNNNNNGG 3 cut(s) 28, 468, 727
BsmFI GGGAC 2 cut(s) 110, 754
BsmI GAATGC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 7 cut(s) 3, 154, 474, 478, 525, 679, 709
BspACI CCGC 2 cut(s) 462, 609
BspCNI CTCAG 4 cut(s) 139, 481, 521, 676
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 418
BspPI GGATC 3 cut(s) 149, 674, 687
BspTI CTTAAG 1 cut(s) 656
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 7 cut(s) 3, 154, 474, 478, 525, 679, 709
BssNI GRCGYC 1 cut(s) 294
Bst2UI CCWGG 4 cut(s) 159, 291, 723, 787
Bst4CI ACNGT 3 cut(s) 137, 339, 454
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 410
BstDEI CTNAG 4 cut(s) 147, 489, 508, 684
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 5 cut(s) 157, 212, 751, 795, 811
BstKTI GATC 7 cut(s) 6, 157, 477, 481, 528, 682, 712
BstMBI GATC 7 cut(s) 3, 154, 474, 478, 525, 679, 709
BstMWI GCNNNNNNNGC 3 cut(s) 181, 410, 542
BstNI CCWGG 4 cut(s) 159, 291, 723, 787
BstSCI CCNGG 4 cut(s) 157, 289, 721, 785
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 5 cut(s) 400, 532, 685, 765, 787
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 1 cut(s) 679
BstXI CCANNNNNNTGG 1 cut(s) 63
BstYI RGATCY 1 cut(s) 679
Bsu15I ATCGAT 1 cut(s) 477
Bsu36I CCTNAGG 1 cut(s) 684
BsuI GTATCC 1 cut(s) 645
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 5 cut(s) 157, 212, 751, 795, 811
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 3 cut(s) 131, 335, 404
CaiI CAGNNNCTG 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 477
CseI GACGC 1 cut(s) 283
Csp6I GTAC 3 cut(s) 179, 587, 601
CviAII CATG 4 cut(s) 170, 562, 634, 707
CviQI GTAC 3 cut(s) 179, 587, 601
DdeI CTNAG 4 cut(s) 147, 489, 508, 684
DpnI GATC 7 cut(s) 5, 156, 476, 480, 527, 681, 711
DpnII GATC 7 cut(s) 3, 154, 474, 478, 525, 679, 709
Eco24I GRGCYC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 684
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoRII CCWGG 4 cut(s) 157, 289, 721, 785
EcoRV GATATC 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 4 cut(s) 173, 565, 637, 710
FaqI GGGAC 2 cut(s) 110, 754
FatI CATG 4 cut(s) 169, 561, 633, 706
FauNDI CATATG 2 cut(s) 381, 597
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 6 cut(s) 414, 462, 546, 699, 776, 779
FokI GGATG 4 cut(s) 164, 219, 758, 802
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 6 cut(s) 414, 462, 546, 699, 776, 779
FspBI CTAG 1 cut(s) 176
GluI GCNGC 6 cut(s) 414, 462, 546, 699, 776, 779
GsuI CTGGAG 1 cut(s) 85
HgaI GACGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 4 cut(s) 173, 565, 637, 710
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 4 cut(s) 346, 385, 506, 630
HphI GGTGA 2 cut(s) 529, 598
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 8, 270, 627
Hpy188III TCNNGA 4 cut(s) 131, 313, 431, 683
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 731, 787
HpyCH4III ACNGT 3 cut(s) 137, 339, 454
HpyCH4IV ACGT 2 cut(s) 585, 603
HpyCH4V TGCA 8 cut(s) 140, 225, 327, 379, 391, 416, 775, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 410, 542
HpyF3I CTNAG 4 cut(s) 147, 489, 508, 684
HpySE526I ACGT 2 cut(s) 585, 603
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 4 cut(s) 173, 565, 637, 710
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 7 cut(s) 3, 154, 474, 478, 525, 679, 709
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 5 cut(s) 400, 532, 685, 765, 787
LweI GCATC 3 cut(s) 336, 448, 796
MaeI CTAG 1 cut(s) 176
MaeII ACGT 2 cut(s) 585, 603
MaeIII GTNAC 2 cut(s) 14, 604
MalI GATC 7 cut(s) 5, 156, 476, 480, 527, 681, 711
MboI GATC 7 cut(s) 3, 154, 474, 478, 525, 679, 709
MboII GAAGA 5 cut(s) 81, 229, 484, 614, 656
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 7 cut(s) 194, 238, 272, 316, 425, 645, 672
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 3 cut(s) 80, 130, 388
MseI TTAA 3 cut(s) 246, 657, 811
MslI CAYNNNNRTG 1 cut(s) 788
MspA1I CMGCKG 2 cut(s) 545, 778
MspCI CTTAAG 1 cut(s) 656
MspR9I CCNGG 4 cut(s) 159, 291, 723, 787
MunI CAATTG 1 cut(s) 672
Mva1269I GAATGC 1 cut(s) 415
MvaI CCWGG 4 cut(s) 159, 291, 723, 787
MwoI GCNNNNNNNGC 3 cut(s) 181, 410, 542
NdeI CATATG 2 cut(s) 381, 597
NdeII GATC 7 cut(s) 3, 154, 474, 478, 525, 679, 709
NlaIII CATG 4 cut(s) 173, 565, 637, 710
NlaIV GGNNCC 1 cut(s) 681
NmuCI GTSAC 2 cut(s) 14, 604
PctI GAATGC 1 cut(s) 415
PfeI GAWTC 3 cut(s) 346, 385, 630
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 6 cut(s) 415, 463, 547, 700, 777, 780
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
Psp6I CCWGG 4 cut(s) 157, 289, 721, 785
PspGI CCWGG 4 cut(s) 157, 289, 721, 785
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 146
PsuI RGATCY 1 cut(s) 679
PvuII CAGCTG 2 cut(s) 545, 778
RsaI GTAC 3 cut(s) 180, 588, 602
RsaNI GTAC 3 cut(s) 179, 587, 601
RseI CAYNNNNRTG 1 cut(s) 788
SaqAI TTAA 3 cut(s) 246, 657, 811
SatI GCNGC 6 cut(s) 414, 462, 546, 699, 776, 779
Sau3AI GATC 7 cut(s) 3, 154, 474, 478, 525, 679, 709
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 4 cut(s) 159, 291, 723, 787
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 3 cut(s) 336, 448, 796
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 2 cut(s) 311, 656
SmoI CTYRAG 2 cut(s) 311, 656
Sse9I AATT 7 cut(s) 194, 238, 272, 316, 425, 645, 672
SsiI CCGC 2 cut(s) 462, 609
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 4 cut(s) 157, 289, 721, 785
TaaI ACNGT 3 cut(s) 137, 339, 454
TaiI ACGT 2 cut(s) 588, 606
TaqI TCGA 2 cut(s) 477, 504
TasI AATT 7 cut(s) 194, 238, 272, 316, 425, 645, 672
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 3 cut(s) 346, 385, 630
Tru1I TTAA 3 cut(s) 246, 657, 811
Tru9I TTAA 3 cut(s) 246, 657, 811
TscAI CASTG 3 cut(s) 131, 342, 411
TseFI GTSAC 2 cut(s) 14, 604
TseI GCWGC 5 cut(s) 413, 545, 698, 775, 778
Tsp45I GTSAC 2 cut(s) 14, 604
TspDTI ATGAA 5 cut(s) 179, 230, 251, 622, 806
TspGWI ACGGA 2 cut(s) 205, 758
TspRI CASTG 3 cut(s) 131, 342, 411
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 4 cut(s) 238, 316, 425, 645
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.