Prupe.1G508600_v2.0.a1

protein At4g37920, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014976
Physical Location & Seq
Reverse (-)
41938145 .. 41942161
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G508600.2

Sequence Viewer

Length: 1317 bp
ATGGAGGTTTCTACTGCCACTCTCCAACCCTCTTGTTCTTTCCCACTAAGAGCCCCTAAAACCGCTACCAGAGACCGCGCTTCTTCTCTCTCTTTCGTCAGAATCTCGTCTAGAAGTATTTCCCTATCTTCCAAAATCACCAATGGTTGTCTCTTACCAGTTAAACAACCAGTCAGACCTGTTGCTGCTGCTACTGTTGGTGATACAACTGCAGTTCCAAATGATTGTTCTAGTGCAGAAGAATTGTCCATTTCTGATTCTTCTAACGCCACATTGGTTGAAGATGAATCCAGAGGAAGTGGTGAAAAGGGGGAAGAGAAAGGTGGTGTGGGGGGCTTGGATGACCACAAAATGACCCAAGTATGTGACAAGCTTATTGAGGTTTTCTTGGTTGACAAGCCCACTCCAACTGACTGGAGAAGATTATTAGCTTTCAGTAAGGAATGGGATGATATCCGGCCTCATTTCTATAAGCGCTGTCAGGACCGGGCAGATGCTGAGGATGATCCTGGAATGAAGCATAAACTACTACGGCTTGGGCGGAAATTGAAAGAGATTGATGAAGATGTGCAAAGACACAATGAACTTCTTAAAGTCGTTAGAGGGGCTCCATCAGAAATTAGTGAAATAGTTTCCAGACGTCGCAAAGATTTTACACAAGAATTTTTTGTGCATGTTCACACTGTTGCTGAATCCTATTACGACAATCCAACAGAGCAAAATGGTTTGGCAAGTATTGGAAATACGTGCTTGGCTGCTGTACAAGCATATGATTCTGCAACTGAAAGCATTGAAGCACTGAATGCTGCAGAGTTGAAATTTCAAGATATTATCAACTCTCCTTCTGTTGATGCTGCTTGTAGGAAGATAGATCACTTGGCTGAGAAAAGTCAACTCGACTCAACATTGGTGATGATGATTACAAAAGCTTGGTCAGCTGCCAAGGAGTCGAGCATGACAAAAGATGAGGTGAAAGATGTATTATATCATTTGTATGTGACTGCAAGAGGTAATCTCCAGAAGCTCATGCCAAAAGAAATTCGGATAATTAAGTATCTTCTCACCATTGAGGATCCTGAGGAGCGTCTGTCTGCATTACATGATGCATTTACCCCAGGAGAGGAACTTGAAGGGAAAGATGTAGATAACCTATTCACGACTCCAGAGAAGCTCCACACCTGGATAAAGGCTGTTGTGGATGCTTACCATTTCAGCCAGGAAGGCACTCTAATTAGGGAAGCAAGAGACCTCATGAATCCAAAGATCATTCAAAAACTGGAGGAGCTGAAGAAGTTAGTCAAAAACAAATTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

49.03

Weight (kDa)

5.69

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36320
fragaria_vesca FvH4_5g38330 FvH4_5g38330 FvH4_5g38330
malus_domestica MD08G1174600.v1.1 MD15G1361200.v1.1
prunus_persica Prupe.1G508600_v2.0.a1 Prupe.1G508600_v2.0.a1
pyrus_communis pycom08g14960
rosa_chinensis RchiOBHm_Chr7g0240351
rosa_multiflora Rmu_sc0038179.1_g000001
rosa_roxburghii Rroxscaffold_3G00220200
rosa_samantha Rh7AG489300 Rh7BG462300 Rh7CG505600
rosa_wichuraiana Rw7G040940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 643
AccII CGCG 1 cut(s) 78
AciI CCGC 3 cut(s) 63, 76, 541
AclWI GGATC 3 cut(s) 500, 1067, 1080
AcsI RAATTY 4 cut(s) 662, 818, 1038, 1307
AcuI CTGAAG 1 cut(s) 1307
AcyI GRCGYC 1 cut(s) 640
AfaI GTAC 1 cut(s) 762
AfeI AGCGCT 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 1120
AgsI TTSAA 7 cut(s) 281, 550, 794, 817, 824, 1130, 1271
AjnI CCWGG 4 cut(s) 508, 1114, 1178, 1215
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
AluBI AGCT 7 cut(s) 373, 431, 929, 938, 1024, 1171, 1285
AluI AGCT 7 cut(s) 373, 431, 929, 938, 1024, 1171, 1285
Alw26I GTCTC 3 cut(s) 66, 155, 1239
AlwI GGATC 3 cut(s) 500, 1067, 1080
AlwNI CAGNNNCTG 1 cut(s) 497
Aor51HI AGCGCT 1 cut(s) 476
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 6 cut(s) 185, 188, 755, 806, 854, 938
ApoI RAATTY 4 cut(s) 662, 818, 1038, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 917, 949
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 2 cut(s) 80, 477
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 6 cut(s) 130, 212, 314, 922, 982, 1054
AvaII GGWCC 1 cut(s) 484
AxyI CCTNAGG 1 cut(s) 1077
BamHI GGATCC 1 cut(s) 1072
BanII GRGCYC 2 cut(s) 55, 610
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 6 cut(s) 172, 175, 742, 793, 841, 925
BccI CCATC 1 cut(s) 619
BceAI ACGGC 1 cut(s) 548
BciT130I CCWGG 4 cut(s) 510, 1116, 1180, 1217
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 3 cut(s) 66, 155, 1239
BfaI CTAG 2 cut(s) 111, 231
BfmI CTRYAG 2 cut(s) 210, 807
BfoI RGCGCY 1 cut(s) 478
BglI GCCNNNNNGGC 1 cut(s) 1221
BisI GCNGC 6 cut(s) 186, 189, 756, 807, 855, 939
BlsI GCNGC 6 cut(s) 187, 190, 757, 808, 856, 940
Bme1390I CCNGG 5 cut(s) 488, 510, 1116, 1180, 1217
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 2 cut(s) 609, 1074
BmrFI CCNGG 5 cut(s) 488, 510, 1116, 1180, 1217
BmsI GCATC 4 cut(s) 484, 841, 1093, 1189
BplI GAGNNNNNCTC 2 cut(s) 999, 1031
BpmI CTGGAG 4 cut(s) 436, 1001, 1146, 1298
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 747
BsaHI GRCGYC 1 cut(s) 640
BsaI GGTCTC 2 cut(s) 66, 1239
BsaJI CCNNGG 2 cut(s) 942, 1114
BsaXI ACNNNNNCTCC 2 cut(s) 1073, 1103
Bsc4I CCNNNNNNNGG 1 cut(s) 1120
Bse1I ACTGG 4 cut(s) 158, 170, 419, 1281
Bse21I CCTNAGG 1 cut(s) 1077
BseBI CCWGG 4 cut(s) 510, 1116, 1180, 1217
BseDI CCNNGG 2 cut(s) 942, 1114
BseGI GGATG 4 cut(s) 346, 454, 508, 1204
BseLI CCNNNNNNNGG 1 cut(s) 1120
BseMII CTCAG 3 cut(s) 489, 873, 1068
BseNI ACTGG 4 cut(s) 158, 170, 419, 1281
BseRI GAGGAG 2 cut(s) 1094, 1295
BseXI GCAGC 6 cut(s) 172, 175, 742, 793, 841, 925
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 460
BsiSI CCGG 2 cut(s) 457, 487
BslI CCNNNNNNNGG 1 cut(s) 1120
BsmAI GTCTC 3 cut(s) 66, 155, 1239
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 1 cut(s) 460
Bso31I GGTCTC 2 cut(s) 66, 1239
Bsp1286I GDGCHC 2 cut(s) 55, 610
Bsp1407I TGTACA 1 cut(s) 760
Bsp143I GATC 4 cut(s) 505, 871, 1072, 1263
BspACI CCGC 3 cut(s) 63, 76, 541
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 3 cut(s) 490, 874, 1069
BspFNI CGCG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 1251
BspLI GGNNCC 2 cut(s) 609, 1074
BspMAI CTGCAG 2 cut(s) 214, 811
BspPI GGATC 3 cut(s) 500, 1067, 1080
BspTNI GGTCTC 2 cut(s) 66, 1239
BsrGI TGTACA 1 cut(s) 760
BsrI ACTGG 4 cut(s) 158, 170, 419, 1281
BssECI CCNNGG 2 cut(s) 942, 1114
BssMI GATC 4 cut(s) 505, 871, 1072, 1263
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 942
Bst2UI CCWGG 4 cut(s) 510, 1116, 1180, 1217
Bst4CI ACNGT 2 cut(s) 196, 685
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 640
BstAPI GCANNNNNTGC 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 760
BstBAI YACGTR 1 cut(s) 747
BstDEI CTNAG 4 cut(s) 47, 498, 882, 1077
BstF5I GGATG 4 cut(s) 346, 454, 508, 1204
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 2 cut(s) 80, 477
BstKTI GATC 4 cut(s) 508, 874, 1075, 1266
BstMAI GTCTC 3 cut(s) 66, 155, 1239
BstMBI GATC 4 cut(s) 505, 871, 1072, 1263
BstMWI GCNNNNNNNGC 4 cut(s) 764, 803, 935, 1221
BstNI CCWGG 4 cut(s) 510, 1116, 1180, 1217
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 5 cut(s) 486, 508, 1114, 1178, 1215
BstSFI CTRYAG 2 cut(s) 210, 807
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 6 cut(s) 172, 175, 742, 793, 841, 925
BstX2I RGATCY 1 cut(s) 1072
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 1072
Bsu36I CCTNAGG 1 cut(s) 1077
BsuRI GGCC 1 cut(s) 460
BtsCI GGATG 4 cut(s) 346, 454, 508, 1204
BtsIMutI CAGTG 2 cut(s) 681, 797
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 1251
CfoI GCGC 2 cut(s) 80, 477
Cfr13I GGNCC 1 cut(s) 484
CseI GACGC 1 cut(s) 1073
Csp6I GTAC 1 cut(s) 761
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 5 cut(s) 674, 955, 1027, 1100, 1252
CviQI GTAC 1 cut(s) 761
DdeI CTNAG 4 cut(s) 47, 498, 882, 1077
DpnI GATC 4 cut(s) 507, 873, 1074, 1265
DpnII GATC 4 cut(s) 505, 871, 1072, 1263
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 942
Eco24I GRGCYC 2 cut(s) 55, 610
Eco31I GGTCTC 2 cut(s) 66, 1239
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 484
Eco47III AGCGCT 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 1307
Eco81I CCTNAGG 1 cut(s) 1077
EcoRII CCWGG 4 cut(s) 508, 1114, 1178, 1215
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 942
EcoT22I ATGCAT 1 cut(s) 1108
EcoT38I GRGCYC 2 cut(s) 55, 610
ErhI CCWWGG 1 cut(s) 942
FaeI CATG 5 cut(s) 677, 958, 1030, 1103, 1255
FatI CATG 5 cut(s) 673, 954, 1026, 1099, 1251
FauNDI CATATG 1 cut(s) 769
Fnu4HI GCNGC 6 cut(s) 186, 189, 756, 807, 855, 939
FokI GGATG 4 cut(s) 353, 461, 515, 1211
FriOI GRGCYC 2 cut(s) 55, 610
Fsp4HI GCNGC 6 cut(s) 186, 189, 756, 807, 855, 939
FspBI CTAG 2 cut(s) 111, 231
GlaI GCGC 2 cut(s) 79, 476
GluI GCNGC 6 cut(s) 186, 189, 756, 807, 855, 939
GsuI CTGGAG 4 cut(s) 436, 1001, 1146, 1298
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 1 cut(s) 460
HapII CCGG 2 cut(s) 457, 487
HgaI GACGC 1 cut(s) 1073
HhaI GCGC 2 cut(s) 80, 477
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 5 cut(s) 677, 958, 1030, 1103, 1255
Hin6I GCGC 2 cut(s) 78, 475
HinP1I GCGC 2 cut(s) 78, 475
HincII GTYRAC 2 cut(s) 394, 893
HindII GTYRAC 2 cut(s) 394, 893
HindIII AAGCTT 2 cut(s) 371, 927
HinfI GANTC 9 cut(s) 102, 257, 287, 692, 773, 899, 947, 1159, 1255
HpaII CCGG 2 cut(s) 457, 487
HphI GGTGA 6 cut(s) 130, 212, 314, 922, 982, 1054
Hpy166II GTNNAC 3 cut(s) 394, 679, 893
Hpy188I TCNGA 5 cut(s) 101, 176, 256, 616, 1044
Hpy8I GTNNAC 3 cut(s) 394, 679, 893
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 3 cut(s) 852, 1124, 1214
HpyCH4III ACNGT 2 cut(s) 196, 685
HpyCH4IV ACGT 2 cut(s) 640, 746
HpyCH4V TGCA 9 cut(s) 212, 236, 571, 673, 779, 809, 1004, 1094, 1106
HpyF10VI GCNNNNNNNGC 4 cut(s) 764, 803, 935, 1221
HpyF3I CTNAG 4 cut(s) 47, 498, 882, 1077
HpySE526I ACGT 2 cut(s) 640, 746
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 5 cut(s) 677, 958, 1030, 1103, 1255
HspAI GCGC 2 cut(s) 78, 475
Kzo9I GATC 4 cut(s) 505, 871, 1072, 1263
LmnI GCTCC 4 cut(s) 613, 1081, 1176, 1282
Lsp1109I GCAGC 6 cut(s) 172, 175, 742, 793, 841, 925
LweI GCATC 4 cut(s) 484, 841, 1093, 1189
MaeI CTAG 2 cut(s) 111, 231
MaeII ACGT 2 cut(s) 640, 746
MaeIII GTNAC 2 cut(s) 365, 997
MalI GATC 4 cut(s) 507, 873, 1074, 1265
MboI GATC 4 cut(s) 505, 871, 1072, 1263
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 2 cut(s) 55, 610
MluCI AATT 9 cut(s) 242, 545, 618, 662, 818, 1038, 1047, 1230, 1307
MlyI GAGTC 3 cut(s) 893, 956, 1153
MmeI TCCRAC 3 cut(s) 49, 431, 734
Mph1103I ATGCAT 1 cut(s) 1108
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 3 cut(s) 162, 591, 1050
MslI CAYNNNNRTG 1 cut(s) 993
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 2 cut(s) 457, 487
MspR9I CCNGG 5 cut(s) 488, 510, 1116, 1180, 1217
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 4 cut(s) 510, 1116, 1180, 1217
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 4 cut(s) 764, 803, 935, 1221
NciI CCSGG 1 cut(s) 488
NdeI CATATG 1 cut(s) 769
NdeII GATC 4 cut(s) 505, 871, 1072, 1263
NlaIII CATG 5 cut(s) 677, 958, 1030, 1103, 1255
NlaIV GGNNCC 2 cut(s) 609, 1074
NmuCI GTSAC 2 cut(s) 365, 997
NsiI ATGCAT 1 cut(s) 1108
NspI RCATGY 1 cut(s) 677
PagI TCATGA 1 cut(s) 1251
PctI GAATGC 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 6 cut(s) 102, 257, 287, 692, 773, 1255
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 6 cut(s) 187, 190, 757, 808, 856, 940
PleI GAGTC 3 cut(s) 893, 955, 1153
PpsI GAGTC 3 cut(s) 893, 955, 1153
Ppu21I YACGTR 1 cut(s) 747
Psp6I CCWGG 4 cut(s) 508, 1114, 1178, 1215
PspGI CCWGG 4 cut(s) 508, 1114, 1178, 1215
PspN4I GGNNCC 2 cut(s) 609, 1074
PspPI GGNCC 1 cut(s) 484
PstI CTGCAG 2 cut(s) 214, 811
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 1072
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
RseI CAYNNNNRTG 1 cut(s) 993
SaqAI TTAA 3 cut(s) 162, 591, 1050
SatI GCNGC 6 cut(s) 186, 189, 756, 807, 855, 939
Sau3AI GATC 4 cut(s) 505, 871, 1072, 1263
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 3 cut(s) 893, 956, 1153
ScrFI CCNGG 5 cut(s) 488, 510, 1116, 1180, 1217
SduI GDGCHC 2 cut(s) 55, 610
SfaNI GCATC 4 cut(s) 484, 841, 1093, 1189
SfcI CTRYAG 2 cut(s) 210, 807
SinI GGWCC 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 993
Sse9I AATT 9 cut(s) 242, 545, 618, 662, 818, 1038, 1047, 1230, 1307
SsiI CCGC 3 cut(s) 63, 76, 541
SspMI CTAG 2 cut(s) 111, 231
StyD4I CCNGG 5 cut(s) 486, 508, 1114, 1178, 1215
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 2 cut(s) 196, 685
TaiI ACGT 2 cut(s) 643, 749
TaqI TCGA 2 cut(s) 897, 950
TasI AATT 9 cut(s) 242, 545, 618, 662, 818, 1038, 1047, 1230, 1307
TatI WGTACW 1 cut(s) 760
TfiI GAWTC 6 cut(s) 102, 257, 287, 692, 773, 1255
Tru1I TTAA 3 cut(s) 162, 591, 1050
Tru9I TTAA 3 cut(s) 162, 591, 1050
TscAI CASTG 2 cut(s) 688, 804
TseFI GTSAC 2 cut(s) 365, 997
TseI GCWGC 6 cut(s) 185, 188, 755, 806, 854, 938
Tsp45I GTSAC 2 cut(s) 365, 997
TspDTI ATGAA 5 cut(s) 300, 530, 576, 597, 1268
TspRI CASTG 2 cut(s) 688, 804
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 4 cut(s) 662, 818, 1038, 1307
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 2 cut(s) 111, 231
ZraI GACGTC 1 cut(s) 641
Zsp2I ATGCAT 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.