Rmu_sc0038179.1_g000001

protein At4g37920, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038179.1
OG0014976
Physical Location & Seq
Forward (+)
1 .. 1903
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038179.1_g000001.1.cds

Sequence Viewer

Length: 767 bp
cacagattgatgaagatgttcaaagacacaatgaactgcttaaagttgttagaggggctccatcagatattagtgacatagttgccagacgtcgcaaagatttcacaaaagaattttttgtgcatcttcacacggtttctgagtcctattatgagaatctagaagagcaaaatgctttggcaagcattggaaatacatgcttggcagctgtacaagcatatgattctgcaactgaaagcattgaagcactgaatgctgcagagttgaaatttcaagatattatcgattctccttctgttgatgctgcttgtaggaagatagaccacttggctgagaaaaatcaactcgactcagcattggttatgatgattacaaaagcttggtcagctgctaaagaatcgagcatgacgaaagatgaggtaaaagatgtattatatcacttgtatgtaactgcaagaggtaatcttcagaagctcatgccaaaagaaattcggatagttaagtatctgctcacaattgacgatcctgaggagcggctgtctgccttacaagatgcattcaccccgggagaggaacttgaagggaaggatgtagataacctctacacgaccccggagaagcttcacacctggataaaggctgtcgtggatgcttatcatttgagcagggaaggtactctaataagggaagcaagggacctgatgaatccaaagatcataaaaaaactggaggacctgaagaaggtagttgaaaacaagtttttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.89

Weight (kDa)

5.2

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36320
fragaria_vesca FvH4_5g38330 FvH4_5g38330 FvH4_5g38330
malus_domestica MD08G1174600.v1.1 MD15G1361200.v1.1
prunus_persica Prupe.1G508600_v2.0.a1 Prupe.1G508600_v2.0.a1
pyrus_communis pycom08g14960
rosa_chinensis RchiOBHm_Chr7g0240351
rosa_multiflora Rmu_sc0038179.1_g000001
rosa_roxburghii Rroxscaffold_3G00220200
rosa_samantha Rh7AG489300 Rh7BG462300 Rh7CG505600
rosa_wichuraiana Rw7G040940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccBSI CCGCTC 1 cut(s) 534
AciI CCGC 1 cut(s) 534
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 3 cut(s) 112, 268, 488
AcuI CTGAAG 2 cut(s) 451, 757
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 212, 675
AfiI CCNNNNNNNGG 2 cut(s) 570, 741
AgsI TTSAA 6 cut(s) 22, 244, 267, 274, 580, 751
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 5 cut(s) 208, 379, 388, 474, 621
AluI AGCT 5 cut(s) 208, 379, 388, 474, 621
AlwI GGATC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 564
ApeKI GCWGC 4 cut(s) 205, 256, 304, 388
ApoI RAATTY 3 cut(s) 112, 268, 488
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 696, 732
AsuC2I CCSGG 3 cut(s) 565, 566, 613
AsuHPI GGTGA 1 cut(s) 552
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 2 cut(s) 696, 732
AxyI CCTNAGG 1 cut(s) 527
BanII GRGCYC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 217, 243, 291, 375
BccI CCATC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 630
BcnI CCSGG 3 cut(s) 565, 566, 613
BfaI CTAG 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 257
BisI GCNGC 5 cut(s) 206, 257, 305, 389, 535
BlsI GCNGC 5 cut(s) 207, 258, 306, 390, 536
Bme1390I CCNGG 4 cut(s) 565, 566, 613, 630
Bme18I GGWCC 2 cut(s) 696, 732
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 2 cut(s) 696, 732
BmiI GGNNCC 2 cut(s) 59, 697
BmrFI CCNGG 4 cut(s) 565, 566, 613, 630
BmsI GCATC 4 cut(s) 132, 291, 543, 639
BpmI CTGGAG 1 cut(s) 748
BpuMI CCSGG 3 cut(s) 565, 566, 613
Bsa29I ATCGAT 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 653
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 563, 564, 611
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 741
Bse1I ACTGG 1 cut(s) 731
Bse21I CCTNAGG 1 cut(s) 527
Bse8I GATNNNNATC 1 cut(s) 653
BseBI CCWGG 1 cut(s) 630
BseCI ATCGAT 1 cut(s) 284
BseDI CCNNGG 3 cut(s) 563, 564, 611
BseGI GGATG 2 cut(s) 594, 654
BseJI GATNNNNATC 1 cut(s) 653
BseLI CCNNNNNNNGG 2 cut(s) 570, 741
BseMII CTCAG 4 cut(s) 131, 323, 365, 518
BseNI ACTGG 1 cut(s) 731
BseRI GAGGAG 1 cut(s) 544
BseXI GCAGC 4 cut(s) 217, 243, 291, 375
BshVI ATCGAT 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 2 cut(s) 565, 613
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 2 cut(s) 570, 741
BsmFI GGGAC 1 cut(s) 709
BsmI GAATGC 2 cut(s) 258, 556
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 210
Bsp143I GATC 2 cut(s) 522, 713
BspACI CCGC 1 cut(s) 534
BspCNI CTCAG 4 cut(s) 132, 324, 364, 519
BspDI ATCGAT 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 59, 697
BspMAI CTGCAG 1 cut(s) 261
BspPI GGATC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 210
BsrI ACTGG 1 cut(s) 731
BssECI CCNNGG 3 cut(s) 563, 564, 611
BssMI GATC 2 cut(s) 522, 713
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 4 cut(s) 140, 332, 351, 527
BstENI CCTNNNNNAGG 1 cut(s) 739
BstF5I GGATG 2 cut(s) 594, 654
BstKTI GATC 2 cut(s) 525, 716
BstMBI GATC 2 cut(s) 522, 713
BstMWI GCNNNNNNNGC 3 cut(s) 214, 253, 385
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 4 cut(s) 563, 564, 611, 628
BstSFI CTRYAG 1 cut(s) 257
BstV1I GCAGC 4 cut(s) 217, 243, 291, 375
Bsu15I ATCGAT 1 cut(s) 284
Bsu36I CCTNAGG 1 cut(s) 527
BsuTUI ATCGAT 1 cut(s) 284
BtsCI GGATG 2 cut(s) 594, 654
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 696, 732
Cfr9I CCCGGG 1 cut(s) 564
ClaI ATCGAT 1 cut(s) 284
Csp6I GTAC 2 cut(s) 211, 674
CviAII CATG 3 cut(s) 197, 405, 477
CviJI RGCY 9 cut(s) 58, 208, 331, 379, 388, 474, 537, 621, 640
CviKI_1 RGCY 9 cut(s) 58, 208, 331, 379, 388, 474, 537, 621, 640
CviQI GTAC 2 cut(s) 211, 674
DdeI CTNAG 4 cut(s) 140, 332, 351, 527
DpnI GATC 2 cut(s) 524, 715
DpnII GATC 2 cut(s) 522, 713
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 696, 732
Eco57I CTGAAG 2 cut(s) 451, 757
Eco81I CCTNAGG 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 564
EcoNI CCTNNNNNAGG 1 cut(s) 739
EcoO109I RGGNCCY 2 cut(s) 696, 732
EcoRII CCWGG 1 cut(s) 628
EcoT22I ATGCAT 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 3 cut(s) 200, 408, 480
FaqI GGGAC 1 cut(s) 709
FatI CATG 3 cut(s) 196, 404, 476
FauNDI CATATG 1 cut(s) 219
Fnu4HI GCNGC 5 cut(s) 206, 257, 305, 389, 535
FokI GGATG 2 cut(s) 601, 661
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 5 cut(s) 206, 257, 305, 389, 535
FspBI CTAG 1 cut(s) 160
GluI GCNGC 5 cut(s) 206, 257, 305, 389, 535
GsuI CTGGAG 1 cut(s) 748
HapII CCGG 2 cut(s) 565, 613
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 3 cut(s) 200, 408, 480
HindIII AAGCTT 2 cut(s) 377, 619
HinfI GANTC 7 cut(s) 142, 156, 223, 286, 349, 397, 705
HpaII CCGG 2 cut(s) 565, 613
HphI GGTGA 1 cut(s) 552
Hpy188I TCNGA 4 cut(s) 66, 141, 470, 494
Hpy188III TCNNGA 3 cut(s) 160, 274, 526
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 5 cut(s) 302, 574, 579, 664, 735
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 5 cut(s) 123, 229, 259, 454, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 253, 385
HpyF3I CTNAG 4 cut(s) 140, 332, 351, 527
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 3 cut(s) 200, 408, 480
Kzo9I GATC 2 cut(s) 522, 713
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 63, 531
Lsp1109I GCAGC 4 cut(s) 217, 243, 291, 375
LweI GCATC 4 cut(s) 132, 291, 543, 639
MaeI CTAG 1 cut(s) 160
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 73, 447
MalI GATC 2 cut(s) 524, 715
MbiI CCGCTC 1 cut(s) 534
MboI GATC 2 cut(s) 522, 713
MboII GAAGA 6 cut(s) 25, 118, 175, 327, 457, 750
MfeI CAATTG 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 4 cut(s) 112, 268, 488, 515
MlyI GAGTC 2 cut(s) 151, 343
MnlI CCTC 7 cut(s) 46, 411, 451, 522, 564, 610, 723
Mph1103I ATGCAT 1 cut(s) 558
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 41, 500
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 2 cut(s) 208, 388
MspI CCGG 2 cut(s) 565, 613
MspR9I CCNGG 4 cut(s) 565, 566, 613, 630
MunI CAATTG 1 cut(s) 515
Mva1269I GAATGC 2 cut(s) 258, 556
MvaI CCWGG 1 cut(s) 630
MwoI GCNNNNNNNGC 3 cut(s) 214, 253, 385
NciI CCSGG 3 cut(s) 565, 566, 613
NdeI CATATG 1 cut(s) 219
NdeII GATC 2 cut(s) 522, 713
NlaIII CATG 3 cut(s) 200, 408, 480
NlaIV GGNNCC 2 cut(s) 59, 697
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PctI GAATGC 2 cut(s) 258, 556
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 5 cut(s) 156, 223, 286, 397, 705
PkrI GCNGC 5 cut(s) 207, 258, 306, 390, 536
PleI GAGTC 2 cut(s) 150, 343
PpsI GAGTC 2 cut(s) 150, 343
PpuMI RGGWCCY 2 cut(s) 696, 732
Psp5II RGGWCCY 2 cut(s) 696, 732
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 2 cut(s) 59, 697
PspPI GGNCC 2 cut(s) 696, 732
PspPPI RGGWCCY 2 cut(s) 696, 732
PstI CTGCAG 1 cut(s) 261
PvuII CAGCTG 2 cut(s) 208, 388
RsaI GTAC 2 cut(s) 212, 675
RsaNI GTAC 2 cut(s) 211, 674
RseI CAYNNNNRTG 1 cut(s) 443
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 41, 500
SatI GCNGC 5 cut(s) 206, 257, 305, 389, 535
Sau3AI GATC 2 cut(s) 522, 713
Sau96I GGNCC 2 cut(s) 696, 732
SchI GAGTC 2 cut(s) 151, 343
ScrFI CCNGG 4 cut(s) 565, 566, 613, 630
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 4 cut(s) 132, 291, 543, 639
SfcI CTRYAG 1 cut(s) 257
SinI GGWCC 2 cut(s) 696, 732
SmaI CCCGGG 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 443
Sse9I AATT 4 cut(s) 112, 268, 488, 515
SsiI CCGC 1 cut(s) 534
SspMI CTAG 1 cut(s) 160
StyD4I CCNGG 4 cut(s) 563, 564, 611, 628
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 284, 347, 400
TasI AATT 4 cut(s) 112, 268, 488, 515
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 537
TfiI GAWTC 5 cut(s) 156, 223, 286, 397, 705
Tru1I TTAA 2 cut(s) 41, 500
Tru9I TTAA 2 cut(s) 41, 500
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 4 cut(s) 205, 256, 304, 388
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 26, 47, 718
TspMI CCCGGG 1 cut(s) 564
TspRI CASTG 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 696, 732
XagI CCTNNNNNAGG 1 cut(s) 739
XapI RAATTY 3 cut(s) 112, 268, 488
XbaI TCTAGA 1 cut(s) 159
XceI RCATGY 1 cut(s) 200
XmaI CCCGGG 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 160
ZraI GACGTC 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.