AT1G36980

Transmembrane protein 50 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015086
Physical Location & Seq
Forward (+)
14024634 .. 14027040
2407 bp
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UTR
Exon/CDS
Intron
AT1G36980.1

Sequence Viewer

Length: 408 bp
ATGGATTTGGCAGAACTGTGGGCGATTTTCGGACCCGGATTCTCCGGCGCCGTTTTCGGAACCGGGTGGTGGTTTTGGGTCGACGCCGTCGTTTGCAGTTCCATCCAAGTTCCCTTCGTCCATTACCTTCCCGGCATATTCGCTTCTCTCGGAGCTTTGATGTTCAATTGCGTCAGAAAAGAAGACATTGATTACTCTCCTTACGACGAAGGCGAGTGGAGATTGAAGCTGTGGCTTTTCATAGCGTATGTCGTAGCATTTGTTTCCTTAGCTGCTTCTGTTGGCTTGCTGATTCAAGATTCGGTTGTGAAGACTGGGCCTTCAACTTGGACTGGTGTGGCTGGTGTCTTTCAATGTGTATTTGTATTGATAAGTGGGCTAATGTATTGGACATCGCACTCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0220

Protein Analysis

135

Amino Acids

14.96

Weight (kDa)

4.58

Isoelectric Point (pI)

20.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0220 PF05255 14 - 133 2.4e-24 Uncharacterised protein family (UPF0220)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36980 AT1G36980
fragaria_vesca FvH4_5g38950
malus_domestica MD15G1359200.v1.1
prunus_persica Prupe.1G506000_v2.0.a1 Prupe.1G506000_v2.0.a1
pyrus_communis pycom15g32150
rosa_chinensis RchiOBHm_Chr7g0240921
rosa_multiflora Rmu_sc0004821.1_g000025
rosa_roxburghii Rroxscaffold_3G00219420
rosa_rugosa Rorug07G0340100 Rorug07G0340200
rosa_samantha Rh7BG466300 Rh7CG512800 Rh7DG479600
rosa_wichuraiana Rw7G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 81
AcyI GRCGYC 2 cut(s) 48, 84
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 5 cut(s) 166, 226, 296, 324, 353
AluBI AGCT 3 cut(s) 155, 229, 272
AluI AGCT 3 cut(s) 155, 229, 272
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 32, 317
AsuC2I CCSGG 3 cut(s) 36, 64, 132
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 189, 317
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 110
BceAI ACGGC 2 cut(s) 35, 71
BcnI CCSGG 3 cut(s) 36, 64, 132
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 3 cut(s) 36, 64, 132
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 32, 317
BmiI GGNNCC 3 cut(s) 34, 49, 61
BmrFI CCNGG 3 cut(s) 36, 64, 132
BmrI ACTGGG 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 324
BpiI GAAGAC 2 cut(s) 189, 317
Bpu10I CCTNAGC 1 cut(s) 268
BpuMI CCSGG 3 cut(s) 36, 64, 132
BsaHI GRCGYC 2 cut(s) 48, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 319, 337
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 319, 337
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 47
BsiSI CCGG 4 cut(s) 36, 45, 63, 132
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 1 cut(s) 319
BspANI GGCC 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 34, 49, 61
BspT107I GGYRCC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 319, 337
BssNI GRCGYC 2 cut(s) 48, 84
Bst4CI ACNGT 1 cut(s) 18
BstACI GRCGYC 2 cut(s) 48, 84
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 268, 400
BstF5I GGATG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 34, 62, 130
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 2 cut(s) 189, 317
BsuRI GGCC 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 32, 317
CseI GACGC 2 cut(s) 92, 160
CviJI RGCY 8 cut(s) 155, 229, 235, 272, 285, 319, 341, 379
CviKI_1 RGCY 8 cut(s) 155, 229, 235, 272, 285, 319, 341, 379
DdeI CTNAG 2 cut(s) 268, 400
DinI GGCGCC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaiI YATR 3 cut(s) 137, 242, 249
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 273
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 273
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 1 cut(s) 319
HapII CCGG 4 cut(s) 36, 45, 63, 132
HgaI GACGC 2 cut(s) 92, 160
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 2 cut(s) 48, 84
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 3 cut(s) 39, 292, 299
HpaII CCGG 4 cut(s) 36, 45, 63, 132
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 5 cut(s) 32, 59, 152, 176, 403
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 3 cut(s) 86, 92, 209
HpyAV CCTTC 4 cut(s) 124, 137, 203, 330
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 268, 400
Hsp92I GRCGYC 2 cut(s) 48, 84
HspAI GCGC 1 cut(s) 48
KasI GGCGCC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 49, 58, 76, 145, 300, 318, 327
Lsp1109I GCAGC 1 cut(s) 259
MboII GAAGA 2 cut(s) 194, 322
MfeI CAATTG 1 cut(s) 166
MluCI AATT 1 cut(s) 166
Mly113I GGCGCC 1 cut(s) 48
MspI CCGG 4 cut(s) 36, 45, 63, 132
MspR9I CCNGG 3 cut(s) 36, 64, 132
MunI CAATTG 1 cut(s) 166
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 3 cut(s) 36, 64, 132
NlaIV GGNNCC 3 cut(s) 34, 49, 61
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 210
PfeI GAWTC 3 cut(s) 39, 292, 299
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 274
PluTI GGCGCC 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 34, 49, 61
PspPI GGNCC 2 cut(s) 32, 317
PsyI GACNNNGTC 1 cut(s) 86
SalI GTCGAC 1 cut(s) 80
SatI GCNGC 1 cut(s) 273
Sau96I GGNCC 2 cut(s) 32, 317
ScrFI CCNGG 3 cut(s) 36, 64, 132
SetI ASST 4 cut(s) 129, 157, 231, 274
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 1 cut(s) 32
Sse9I AATT 1 cut(s) 166
SspDI GGCGCC 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 34, 62, 130
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 166
TfiI GAWTC 3 cut(s) 39, 292, 299
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.