RchiOBHm_Chr7g0240921

Transmembrane protein 50 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015086
Physical Location & Seq
Forward (+)
66881104 .. 66883148
2045 bp
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UTR
Exon/CDS
Intron
PRQ21592

Sequence Viewer

Length: 408 bp
ATGGATATGCCGGAGCTTTGGGCAATCTTCGGGCCGGGCTTCGCCGGCGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTCGACGCCGTCGTTTGCAGCTCCGTCACGGTCTCATTCGTTCACTACCTCCCAGGTATTTTTGCTTCTTTGGCGGCTTTGATGTTCAATTGTGTGAAGAAGGACGACATTGATTACTCTCCTTACGAAGAGGGCGAGTGGAGGTTGAAGCTTTGGCTGTTCATTGCTTATGTTGTTTCCTTTGTATCGTTGGCGGCATCAGTGGGTTTGCTAATACAAGATTCACTTGAGACGACTGGCCCTTCAGTGTGGACAGGAACTGCTGGTGTATTGCAAGCCGTTTTCGTGTTGGTCAGTGGACTTATATATTGGACTGCTCACTCGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0220

Protein Analysis

135

Amino Acids

14.81

Weight (kDa)

4.33

Isoelectric Point (pI)

23.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0220 PF05255 14 - 133 2.2e-22 Uncharacterised protein family (UPF0220)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36980 AT1G36980
fragaria_vesca FvH4_5g38950
malus_domestica MD15G1359200.v1.1
prunus_persica Prupe.1G506000_v2.0.a1 Prupe.1G506000_v2.0.a1
pyrus_communis pycom15g32150
rosa_chinensis RchiOBHm_Chr7g0240921
rosa_multiflora Rmu_sc0004821.1_g000025
rosa_roxburghii Rroxscaffold_3G00219420
rosa_rugosa Rorug07G0340100 Rorug07G0340200
rosa_samantha Rh7BG466300 Rh7CG512800 Rh7DG479600
rosa_wichuraiana Rw7G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 152, 272
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 2 cut(s) 60, 84
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 166, 226
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 3 cut(s) 16, 99, 229
AluI AGCT 3 cut(s) 16, 99, 229
Alw26I GTCTC 2 cut(s) 115, 302
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 2 cut(s) 32, 316
ApeKI GCWGC 1 cut(s) 96
AspLEI GCGC 2 cut(s) 50, 62
AspS9I GGNCC 2 cut(s) 32, 317
AsuC2I CCSGG 2 cut(s) 36, 64
BanI GGYRCC 1 cut(s) 59
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbvI GCAGC 1 cut(s) 108
BceAI ACGGC 2 cut(s) 71, 341
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 2 cut(s) 36, 64
BcoDI GTCTC 2 cut(s) 115, 302
BfoI RGCGCY 2 cut(s) 51, 63
BisI GCNGC 3 cut(s) 97, 153, 273
BlsI GCNGC 3 cut(s) 98, 154, 274
Bme1390I CCNGG 3 cut(s) 36, 64, 132
BmgT120I GGNCC 2 cut(s) 32, 317
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 3 cut(s) 36, 64, 132
BmsI GCATC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 36, 64
BsaHI GRCGYC 2 cut(s) 60, 84
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 108
BshFI GGCC 2 cut(s) 34, 318
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 4 cut(s) 11, 35, 45, 63
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 115, 302
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 2 cut(s) 34, 318
Bso31I GGTCTC 1 cut(s) 115
BspACI CCGC 2 cut(s) 152, 272
BspANI GGCC 2 cut(s) 34, 318
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 130
BssNI GRCGYC 2 cut(s) 60, 84
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 2 cut(s) 60, 84
BstC8I GCNNGC 2 cut(s) 46, 354
BstH2I RGCGCY 2 cut(s) 51, 63
BstHHI GCGC 2 cut(s) 50, 62
BstMAI GTCTC 2 cut(s) 115, 302
BstMWI GCNNNNNNNGC 2 cut(s) 45, 149
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 3 cut(s) 34, 62, 130
BstV1I GCAGC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 34, 318
BtsIMutI CAGTG 3 cut(s) 285, 330, 379
Cac8I GCNNGC 2 cut(s) 46, 354
CaiI CAGNNNCTG 1 cut(s) 338
CfoI GCGC 2 cut(s) 50, 62
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 32, 317
CseI GACGC 1 cut(s) 92
CviJI RGCY 9 cut(s) 16, 34, 39, 99, 155, 229, 235, 318, 356
CviKI_1 RGCY 9 cut(s) 16, 34, 39, 99, 155, 229, 235, 318, 356
DinI GGCGCC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 130
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 302
FaiI YATR 4 cut(s) 8, 249, 383, 385
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 97, 153, 273
Fsp4HI GCNGC 3 cut(s) 97, 153, 273
GlaI GCGC 2 cut(s) 49, 61
GluI GCNGC 3 cut(s) 97, 153, 273
HaeII RGCGCY 2 cut(s) 51, 63
HaeIII GGCC 2 cut(s) 34, 318
HapII CCGG 4 cut(s) 11, 35, 45, 63
HgaI GACGC 1 cut(s) 92
HhaI GCGC 2 cut(s) 50, 62
Hin1I GRCGYC 2 cut(s) 60, 84
Hin6I GCGC 2 cut(s) 48, 60
HinP1I GCGC 2 cut(s) 48, 60
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 299
HpaII CCGG 4 cut(s) 11, 35, 45, 63
Hpy166II GTNNAC 4 cut(s) 82, 121, 330, 377
Hpy8I GTNNAC 4 cut(s) 82, 121, 330, 377
Hpy99I CGWCG 2 cut(s) 86, 92
HpyAV CCTTC 2 cut(s) 172, 330
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 96, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 149
Hsp92I GRCGYC 2 cut(s) 60, 84
HspAI GCGC 2 cut(s) 48, 60
KasI GGCGCC 1 cut(s) 59
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 13, 104
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 103
MboII GAAGA 3 cut(s) 19, 187, 218
MfeI CAATTG 1 cut(s) 166
MluCI AATT 1 cut(s) 166
Mly113I GGCGCC 1 cut(s) 60
MnlI CCTC 3 cut(s) 137, 202, 213
MreI CGCCGGCG 1 cut(s) 44
MroNI GCCGGC 1 cut(s) 44
MspI CCGG 4 cut(s) 11, 35, 45, 63
MspR9I CCNGG 3 cut(s) 36, 64, 132
MunI CAATTG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 45, 149
NaeI GCCGGC 1 cut(s) 46
NarI GGCGCC 1 cut(s) 60
NciI CCSGG 2 cut(s) 36, 64
NgoMIV GCCGGC 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 210
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 299
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 3 cut(s) 98, 154, 274
PluTI GGCGCC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 32, 317
PstNI CAGNNNCTG 1 cut(s) 338
PsyI GACNNNGTC 1 cut(s) 86
SalI GTCGAC 1 cut(s) 80
SatI GCNGC 3 cut(s) 97, 153, 273
Sau96I GGNCC 2 cut(s) 32, 317
ScrFI CCNGG 3 cut(s) 36, 64, 132
SetI ASST 6 cut(s) 18, 101, 129, 136, 224, 231
SfaNI GCATC 1 cut(s) 284
SfoI GGCGCC 1 cut(s) 61
SgrAI CRCCGGYG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 166
SsiI CCGC 2 cut(s) 152, 272
SspDI GGCGCC 1 cut(s) 59
StyD4I CCNGG 3 cut(s) 34, 62, 130
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 166
TauI GCSGC 2 cut(s) 155, 275
TfiI GAWTC 1 cut(s) 299
TscAI CASTG 3 cut(s) 285, 330, 379
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 285, 330, 379
Tth111I GACNNNGTC 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.