Rmu_sc0004821.1_g000025

Transmembrane protein 50 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004821.1
OG0015086
Physical Location & Seq
Forward (+)
122663 .. 123937
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004821.1_g000025.1.cds

Sequence Viewer

Length: 402 bp
atgccggagctttgggcaatcttcgggccaggcttcgccggcgctgtgttcggagccgggtggtggttctgggtcgacgccgtcgtttgcagctccgtcacggtctcattcgttcactacctcccaggtatttttgcttctttggcggccttgatgttcaattgtgtgaagaaggacgacattgattactctccttacgaagagggcgagtggaggttgaagctttggctgttcattgcttatgttgtttcctttgtatcgttggcggcatcagtgggtttgctaatacaagattcacttgagacgactggcccttcagtgtggacaggaactgctggtgtattgcaagccgttttcgtgttggtcagtggacttatatattggactgctcactcgcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0220

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

4.45

Isoelectric Point (pI)

23.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36980 AT1G36980
fragaria_vesca FvH4_5g38950
malus_domestica MD15G1359200.v1.1
prunus_persica Prupe.1G506000_v2.0.a1 Prupe.1G506000_v2.0.a1
pyrus_communis pycom15g32150
rosa_chinensis RchiOBHm_Chr7g0240921
rosa_multiflora Rmu_sc0004821.1_g000025
rosa_roxburghii Rroxscaffold_3G00219420
rosa_rugosa Rorug07G0340100 Rorug07G0340200
rosa_samantha Rh7BG466300 Rh7CG512800 Rh7DG479600
rosa_wichuraiana Rw7G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AciI CCGC 2 cut(s) 146, 266
AcuI CTGAAG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 2 cut(s) 160, 220
AjnI CCWGG 2 cut(s) 28, 124
AluBI AGCT 3 cut(s) 10, 93, 223
AluI AGCT 3 cut(s) 10, 93, 223
Alw26I GTCTC 2 cut(s) 109, 296
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 3 cut(s) 26, 147, 310
ApeKI GCWGC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 26, 311
AsuC2I CCSGG 1 cut(s) 58
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 2 cut(s) 65, 335
BciT130I CCWGG 2 cut(s) 30, 126
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 109, 296
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 3 cut(s) 91, 147, 267
BlsI GCNGC 3 cut(s) 92, 148, 268
Bme1390I CCNGG 3 cut(s) 30, 58, 126
BmgT120I GGNCC 2 cut(s) 26, 311
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 3 cut(s) 30, 58, 126
BmsI GCATC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 30, 126
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 3 cut(s) 28, 149, 312
BsiSI CCGG 3 cut(s) 5, 39, 57
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 109, 296
BsmBI CGTCTC 1 cut(s) 296
BsnI GGCC 3 cut(s) 28, 149, 312
Bso31I GGTCTC 1 cut(s) 109
BspACI CCGC 2 cut(s) 146, 266
BspANI GGCC 3 cut(s) 28, 149, 312
BspLI GGNNCC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 30, 126
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 40, 348
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstMAI GTCTC 2 cut(s) 109, 296
BstMWI GCNNNNNNNGC 2 cut(s) 39, 143
BstNI CCWGG 2 cut(s) 30, 126
BstSCI CCNGG 3 cut(s) 28, 56, 124
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 28, 149, 312
BtsIMutI CAGTG 3 cut(s) 279, 324, 373
Cac8I GCNNGC 2 cut(s) 40, 348
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 26, 311
CseI GACGC 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 28, 124
Esp3I CGTCTC 1 cut(s) 296
FaiI YATR 3 cut(s) 243, 377, 379
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 91, 147, 267
Fsp4HI GCNGC 3 cut(s) 91, 147, 267
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 91, 147, 267
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 28, 149, 312
HapII CCGG 3 cut(s) 5, 39, 57
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 293
HpaII CCGG 3 cut(s) 5, 39, 57
Hpy166II GTNNAC 4 cut(s) 76, 115, 324, 371
Hpy188I TCNGA 1 cut(s) 53
Hpy8I GTNNAC 4 cut(s) 76, 115, 324, 371
Hpy99I CGWCG 2 cut(s) 80, 86
HpyAV CCTTC 2 cut(s) 166, 324
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 90, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 143
Hsp92I GRCGYC 1 cut(s) 78
HspAI GCGC 1 cut(s) 42
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
LmnI GCTCC 3 cut(s) 7, 53, 98
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 3 cut(s) 13, 181, 212
MfeI CAATTG 1 cut(s) 160
MluCI AATT 1 cut(s) 160
MnlI CCTC 3 cut(s) 131, 196, 207
MreI CGCCGGCG 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 38
MspI CCGG 3 cut(s) 5, 39, 57
MspR9I CCNGG 3 cut(s) 30, 58, 126
MunI CAATTG 1 cut(s) 160
MvaI CCWGG 2 cut(s) 30, 126
MwoI GCNNNNNNNGC 2 cut(s) 39, 143
NaeI GCCGGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 58
NgoMIV GCCGGC 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 204
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 293
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 92, 148, 268
Psp6I CCWGG 2 cut(s) 28, 124
PspGI CCWGG 2 cut(s) 28, 124
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 26, 311
PstNI CAGNNNCTG 1 cut(s) 332
PsyI GACNNNGTC 1 cut(s) 80
SalI GTCGAC 1 cut(s) 74
SatI GCNGC 3 cut(s) 91, 147, 267
Sau96I GGNCC 2 cut(s) 26, 311
ScrFI CCNGG 3 cut(s) 30, 58, 126
SetI ASST 6 cut(s) 12, 95, 123, 130, 218, 225
SfaNI GCATC 1 cut(s) 278
SgrAI CRCCGGYG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 160
SsiI CCGC 2 cut(s) 146, 266
StyD4I CCNGG 3 cut(s) 28, 56, 124
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 160
TauI GCSGC 2 cut(s) 149, 269
TfiI GAWTC 1 cut(s) 293
TscAI CASTG 3 cut(s) 279, 324, 373
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 3 cut(s) 279, 324, 373
Tth111I GACNNNGTC 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.