Rorug07G0340100

Transmembrane protein 50 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015086
Physical Location & Seq
Forward (+)
37435369 .. 37439352
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0340100.1

Sequence Viewer

Length: 639 bp
ATGATGATGATGAGGAGTGCGAGCTTGATCCTCCTATTCCTGTTTCTGTTTCTGTTGCTACGGCCGGGTCAAGCAATTTGGCTGACTCTACCCTCCAGCGGCACCAAGTGCGTCTCCGAGGAAATCCAGAACAACGTCGTCGTTTTGGCCGATTACGTCGTTATTTCCGACGACCACTCCCTCTCCCCCACCATCTCCGCCAAGGTGACATCACCTTATGGCAACAATCTTCACCTCAGGGAGAATGCAACACATGGTCAGTTTGCCTTCACCACTCATGAGGCTGGTAACTACCTGGCATGTTTTTGGATTGATGGTCATAATCCAGGAGGCGGTGCCGTAAGTGTCAATCTTGACTGGAAAACTGGGATTGGAGCTAAGGATTGGGAATCAGTAGCGAGAAAAGAGAAGATTGAGGGTCTTGAGCTTGAGCTGCGGAAACTTGAAGGAGCAGTGGAAGCCATCCATGAAAATCTACTCTTTCTCAAGAGCAGAGAAGCGGAGATGAGGAGTGTCAGTGAAAAGACAAACACCAGGGTGGCGTGGTTTAGCATAATGTCATTGGGCGTTTGCATTGCAGTGTCAACTCTTCAGTTATGGCACTTGAAGCAATTTTTCCAAAAGAAGAAGCTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0220

Protein Analysis

212

Amino Acids

23.72

Weight (kDa)

7.06

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP24_GP25L PF01105 25 - 207 2e-49 emp24/gp25L/p24 family/GOLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36980 AT1G36980
fragaria_vesca FvH4_5g38950
malus_domestica MD15G1359200.v1.1
prunus_persica Prupe.1G506000_v2.0.a1 Prupe.1G506000_v2.0.a1
pyrus_communis pycom15g32150
rosa_chinensis RchiOBHm_Chr7g0240921
rosa_multiflora Rmu_sc0004821.1_g000025
rosa_roxburghii Rroxscaffold_3G00219420
rosa_rugosa Rorug07G0340100 Rorug07G0340200
rosa_samantha Rh7BG466300 Rh7CG512800 Rh7DG479600
rosa_wichuraiana Rw7G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 101, 335
AciI CCGC 5 cut(s) 99, 198, 333, 436, 500
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 2 cut(s) 62, 147
AcuI CTGAAG 1 cut(s) 575
AdeI CACNNNGTG 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 98, 332
AgsI TTSAA 2 cut(s) 446, 607
AjnI CCWGG 3 cut(s) 294, 325, 533
AleI CACNNNNGTG 1 cut(s) 536
AluBI AGCT 5 cut(s) 24, 377, 427, 433, 631
AluI AGCT 5 cut(s) 24, 377, 427, 433, 631
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 22
AoxI GGCC 2 cut(s) 62, 147
ApeKI GCWGC 1 cut(s) 433
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 4 cut(s) 204, 217, 224, 262
AxyI CCTNAGG 1 cut(s) 236
BanI GGYRCC 2 cut(s) 101, 335
BbvI GCAGC 1 cut(s) 420
BccI CCATC 3 cut(s) 200, 308, 470
BceAI ACGGC 2 cut(s) 77, 323
BciT130I CCWGG 3 cut(s) 296, 327, 535
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 118
BisI GCNGC 2 cut(s) 100, 434
BlsI GCNGC 2 cut(s) 101, 435
Bme1390I CCNGG 4 cut(s) 66, 296, 327, 535
BmiI GGNNCC 2 cut(s) 103, 337
BmrFI CCNGG 4 cut(s) 66, 296, 327, 535
BmrI ACTGGG 1 cut(s) 375
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 378
BpuEI CTTGAG 3 cut(s) 443, 449, 470
BpuMI CCSGG 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 117, 201, 534
BsaXI ACNNNNNCTCC 6 cut(s) 161, 167, 191, 197, 502, 532
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 332
Bse1I ACTGG 2 cut(s) 362, 370
Bse21I CCTNAGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 3 cut(s) 296, 327, 535
BseDI CCNNGG 3 cut(s) 117, 201, 534
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 98, 332
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 2 cut(s) 362, 370
BseRI GAGGAG 2 cut(s) 28, 523
BseX3I CGGCCG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 420
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 64, 149
BshNI GGYRCC 2 cut(s) 101, 335
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 98, 332
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 2 cut(s) 64, 149
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 5 cut(s) 99, 198, 333, 436, 500
BspANI GGCC 2 cut(s) 64, 149
BspCNI CTCAG 1 cut(s) 249
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 103, 337
BspPI GGATC 1 cut(s) 22
BspT107I GGYRCC 2 cut(s) 101, 335
BsrDI GCAATG 1 cut(s) 573
BsrI ACTGG 2 cut(s) 362, 370
BssECI CCNNGG 3 cut(s) 117, 201, 534
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 3 cut(s) 296, 327, 535
Bst6I CTCTTC 1 cut(s) 594
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 236, 378
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 27
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 4 cut(s) 108, 433, 458, 607
BstNI CCWGG 3 cut(s) 296, 327, 535
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 4 cut(s) 64, 294, 325, 533
BstV1I GCAGC 1 cut(s) 420
BstZI CGGCCG 1 cut(s) 62
Bsu36I CCTNAGG 1 cut(s) 236
BsuRI GGCC 2 cut(s) 64, 149
BtsCI GGATG 1 cut(s) 462
BtsI GCAGTG 2 cut(s) 459, 585
BtsIMutI CAGTG 3 cut(s) 459, 523, 585
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 277
CseI GACGC 1 cut(s) 100
CviAII CATG 4 cut(s) 254, 278, 300, 467
DdeI CTNAG 2 cut(s) 236, 378
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
DraIII CACNNNGTG 1 cut(s) 108
EaeI YGGCCR 2 cut(s) 62, 147
EagI CGGCCG 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
EciI GGCGGA 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 201
Eco52I CGGCCG 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 294, 325, 533
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 4 cut(s) 257, 281, 303, 470
FaiI YATR 8 cut(s) 219, 255, 279, 301, 321, 468, 554, 598
FatI CATG 4 cut(s) 253, 277, 299, 466
Fnu4HI GCNGC 2 cut(s) 100, 434
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 100, 434
GluI GCNGC 2 cut(s) 100, 434
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 2 cut(s) 64, 149
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 100
Hin1II CATG 4 cut(s) 257, 281, 303, 470
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 2 cut(s) 85, 389
HpaII CCGG 1 cut(s) 65
HphI GGTGA 4 cut(s) 204, 217, 224, 262
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 2 cut(s) 118, 169
Hpy188III TCNNGA 5 cut(s) 127, 278, 353, 422, 487
Hpy8I GTNNAC 1 cut(s) 585
Hpy99I CGWCG 4 cut(s) 140, 143, 161, 173
HpyAV CCTTC 2 cut(s) 277, 440
HpyCH4IV ACGT 2 cut(s) 135, 156
HpyCH4V TGCA 3 cut(s) 248, 573, 578
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 433, 458, 607
HpyF3I CTNAG 2 cut(s) 236, 378
HpySE526I ACGT 2 cut(s) 135, 156
Hsp92II CATG 4 cut(s) 257, 281, 303, 470
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 374, 449
Lsp1109I GCAGC 1 cut(s) 420
MaeII ACGT 2 cut(s) 135, 156
MaeIII GTNAC 2 cut(s) 205, 287
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 4 cut(s) 221, 421, 581, 637
MluCI AATT 2 cut(s) 75, 611
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 192
MslI CAYNNNNRTG 2 cut(s) 536, 578
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 4 cut(s) 66, 296, 327, 535
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 3 cut(s) 296, 327, 535
MwoI GCNNNNNNNGC 4 cut(s) 108, 433, 458, 607
NciI CCSGG 1 cut(s) 66
NdeII GATC 1 cut(s) 27
NlaIII CATG 4 cut(s) 257, 281, 303, 470
NlaIV GGNNCC 2 cut(s) 103, 337
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 303
OliI CACNNNNGTG 1 cut(s) 536
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 165
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 2 cut(s) 101, 435
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp6I CCWGG 3 cut(s) 294, 325, 533
PspGI CCWGG 3 cut(s) 294, 325, 533
PspN4I GGNNCC 2 cut(s) 103, 337
RseI CAYNNNNRTG 2 cut(s) 536, 578
SatI GCNGC 2 cut(s) 100, 434
Sau3AI GATC 1 cut(s) 27
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 4 cut(s) 66, 296, 327, 535
SmiMI CAYNNNNRTG 2 cut(s) 536, 578
SmlI CTYRAG 3 cut(s) 422, 428, 485
SmoI CTYRAG 3 cut(s) 422, 428, 485
Sse9I AATT 2 cut(s) 75, 611
SsiI CCGC 5 cut(s) 99, 198, 333, 436, 500
StyD4I CCNGG 4 cut(s) 64, 294, 325, 533
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 2 cut(s) 138, 159
TasI AATT 2 cut(s) 75, 611
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 1 cut(s) 389
TscAI CASTG 3 cut(s) 459, 523, 585
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 483
TspRI CASTG 3 cut(s) 459, 523, 585
XceI RCATGY 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.