Prupe.1G506000_v2.0.a1

Transmembrane protein 50 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015086
Physical Location & Seq
Reverse (-)
41795281 .. 41797241
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G506000.2

Sequence Viewer

Length: 408 bp
ATGGATGTGTCGGAGCTTTGGGCGATCTTCGGGCCAGGCGTAGCCGGAGCCGTGTTCGGAGCCGGTTGGTGGTTCTGGGTCGACGCCGTCGTTTGCAGCTCCGTCAAGGTCTCCTTCGTCCACTACCTCCCTGGCATATTTGCATCTTTGGCGGCGTTGATGTTCAATTGCGTTAAAAAGGAAGACATTGATTACTCTCCGTACGAAGAGAGCGAGTGGAGGTTGAAGCTTTGGCTGTTCATTGCCTATGTTGTAGCCTTTGTATCTCTAGCGGCATCGGTGGGTTTGCTAATACAGGATTCACTTGTGACAACTGGTCCTCCAGTGTGGACAGGAGTTGCTGGTGTCTTGCAATCAGTTTTTGTGTTGATCAGTGGGCTAATTTATTGGACTGCTCACCCGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0220

Protein Analysis

136

Amino Acids

14.79

Weight (kDa)

4.61

Isoelectric Point (pI)

29.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36980 AT1G36980
fragaria_vesca FvH4_5g38950
malus_domestica MD15G1359200.v1.1
prunus_persica Prupe.1G506000_v2.0.a1 Prupe.1G506000_v2.0.a1
pyrus_communis pycom15g32150
rosa_chinensis RchiOBHm_Chr7g0240921
rosa_multiflora Rmu_sc0004821.1_g000025
rosa_roxburghii Rroxscaffold_3G00219420
rosa_rugosa Rorug07G0340100 Rorug07G0340200
rosa_samantha Rh7BG466300 Rh7CG512800 Rh7DG479600
rosa_wichuraiana Rw7G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 152, 272
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 166, 226
AhdI GACNNNNNGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 34, 130
AluBI AGCT 3 cut(s) 16, 99, 229
AluI AGCT 3 cut(s) 16, 99, 229
Alw26I GTCTC 1 cut(s) 115
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 32, 317
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 389
AvaII GGWCC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 108
BceAI ACGGC 2 cut(s) 35, 71
BciT130I CCWGG 2 cut(s) 36, 132
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 269
BisI GCNGC 3 cut(s) 97, 153, 273
BlsI GCNGC 3 cut(s) 98, 154, 274
Bme1390I CCNGG 3 cut(s) 36, 132, 401
Bme18I GGWCC 1 cut(s) 317
BmeRI GACNNNNNGTC 1 cut(s) 315
BmgT120I GGNCC 2 cut(s) 32, 317
BmiI GGNNCC 2 cut(s) 49, 61
BmrFI CCNGG 3 cut(s) 36, 132, 401
BmsI GCATC 2 cut(s) 152, 284
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 319, 323
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 36, 132
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 319, 323
BseXI GCAGC 1 cut(s) 108
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 3 cut(s) 45, 63, 401
BsiWI CGTACG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 24, 369
BspACI CCGC 2 cut(s) 152, 272
BspANI GGCC 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 49, 61
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 2 cut(s) 319, 323
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 24, 369
BssNI GRCGYC 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 36, 132
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 84
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 27, 372
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 24, 369
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 2 cut(s) 36, 132
BstSCI CCNGG 3 cut(s) 34, 130, 399
BstV1I GCAGC 1 cut(s) 108
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 330, 379
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 32, 317
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 202
CviQI GTAC 1 cut(s) 202
DpnI GATC 2 cut(s) 26, 371
DpnII GATC 2 cut(s) 24, 369
DriI GACNNNNNGTC 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 201
Eam1105I GACNNNNNGTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 34, 130
FaiI YATR 2 cut(s) 137, 249
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FbaI TGATCA 1 cut(s) 369
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 97, 153, 273
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 97, 153, 273
FspBI CTAG 1 cut(s) 269
GluI GCNGC 3 cut(s) 97, 153, 273
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 34
HapII CCGG 3 cut(s) 45, 63, 401
HgaI GACGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 84
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 299
HpaII CCGG 3 cut(s) 45, 63, 401
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 3 cut(s) 82, 121, 330
Hpy188I TCNGA 2 cut(s) 13, 59
Hpy8I GTNNAC 3 cut(s) 82, 121, 330
Hpy99I CGWCG 2 cut(s) 86, 92
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 96, 143, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 2 cut(s) 24, 369
LmnI GCTCC 4 cut(s) 13, 47, 59, 104
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 2 cut(s) 152, 284
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 26, 371
MboI GATC 2 cut(s) 24, 369
MboII GAAGA 3 cut(s) 19, 194, 218
MfeI CAATTG 1 cut(s) 166
MluCI AATT 2 cut(s) 166, 381
MnlI CCTC 3 cut(s) 137, 213, 330
MseI TTAA 1 cut(s) 174
MspI CCGG 3 cut(s) 45, 63, 401
MspR9I CCNGG 3 cut(s) 36, 132, 401
MunI CAATTG 1 cut(s) 166
MvaI CCWGG 2 cut(s) 36, 132
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 401
NdeII GATC 2 cut(s) 24, 369
NlaIV GGNNCC 2 cut(s) 49, 61
NmuCI GTSAC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 87, 210
PfeI GAWTC 1 cut(s) 299
Pfl23II CGTACG 1 cut(s) 201
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 3 cut(s) 98, 154, 274
Psp6I CCWGG 2 cut(s) 34, 130
PspGI CCWGG 2 cut(s) 34, 130
PspLI CGTACG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 49, 61
PspPI GGNCC 2 cut(s) 32, 317
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 3 cut(s) 97, 153, 273
Sau3AI GATC 2 cut(s) 24, 369
Sau96I GGNCC 2 cut(s) 32, 317
ScrFI CCNGG 3 cut(s) 36, 132, 401
SetI ASST 6 cut(s) 18, 101, 111, 129, 224, 231
SfaNI GCATC 2 cut(s) 152, 284
SinI GGWCC 1 cut(s) 317
Sse9I AATT 2 cut(s) 166, 381
SsiI CCGC 2 cut(s) 152, 272
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 3 cut(s) 34, 130, 399
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 166, 381
TauI GCSGC 2 cut(s) 155, 275
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 330, 379
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 229
TspGWI ACGGA 2 cut(s) 91, 189
TspRI CASTG 2 cut(s) 330, 379
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.