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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G36990 AT4G08510 AT4G08510 |
| fragaria_vesca | FvH4_5g38960 FvH4_5g38960 FvH4_5g38960 FvH4_5g38960 |
| malus_domestica | MD08G1173100.v1.1 MD15G1358400.v1.1 |
| prunus_persica | Prupe.1G505900_v2.0.a1 |
| pyrus_communis | pycom15g32070 pycom15g32080 |
| rosa_chinensis | RchiOBHm_Chr7g0240931 |
| rosa_laevigata | RLG00000000613 |
| rosa_multiflora | Rmu_sc0001324.1_g000003 Rmu_sc0031641.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00219410 |
| rosa_rugosa | Rorug07G0340300 |
| rosa_samantha | Rh7AG494800 Rh7BG466400 Rh7CG512900 Rh7DG479700 |
| rosa_wichuraiana | Rw7G041850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 695 |
| AccII | CGCG | 1 cut(s) | 776 |
| AccIII | TCCGGA | 3 cut(s) | 28, 385, 1699 |
| AciI | CCGC | 4 cut(s) | 295, 776, 1041, 1323 |
| AcoI | YGGCCR | 1 cut(s) | 1297 |
| AcsI | RAATTY | 1 cut(s) | 955 |
| AcuI | CTGAAG | 4 cut(s) | 600, 834, 915, 1385 |
| AcyI | GRCGYC | 2 cut(s) | 692, 1509 |
| AfaI | GTAC | 4 cut(s) | 609, 736, 1246, 1676 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 524, 572, 857 |
| AgeI | ACCGGT | 1 cut(s) | 919 |
| AhlI | ACTAGT | 1 cut(s) | 1547 |
| AjnI | CCWGG | 2 cut(s) | 622, 1530 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1088, 1120 |
| Alw21I | GWGCWC | 2 cut(s) | 1266, 1363 |
| Alw26I | GTCTC | 6 cut(s) | 297, 391, 447, 619, 756, 1699 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 113 |
| Ama87I | CYCGRG | 3 cut(s) | 444, 881, 1182 |
| Aor13HI | TCCGGA | 3 cut(s) | 28, 385, 1699 |
| AoxI | GGCC | 3 cut(s) | 790, 1297, 1688 |
| ApeKI | GCWGC | 3 cut(s) | 297, 1187, 1325 |
| ApoI | RAATTY | 1 cut(s) | 955 |
| AsiGI | ACCGGT | 1 cut(s) | 919 |
| AspLEI | GCGC | 1 cut(s) | 776 |
| AspS9I | GGNCC | 4 cut(s) | 292, 337, 515, 791 |
| AsuHPI | GGTGA | 4 cut(s) | 23, 1010, 1387, 1640 |
| AsuII | TTCGAA | 1 cut(s) | 991 |
| AvaI | CYCGRG | 3 cut(s) | 444, 881, 1182 |
| AvaII | GGWCC | 3 cut(s) | 292, 337, 515 |
| BalI | TGGCCA | 1 cut(s) | 1299 |
| BamHI | GGATCC | 3 cut(s) | 328, 382, 388 |
| BanII | GRGCYC | 2 cut(s) | 227, 1266 |
| BbsI | GAAGAC | 1 cut(s) | 875 |
| Bbv12I | GWGCWC | 2 cut(s) | 1266, 1363 |
| BbvCI | CCTCAGC | 1 cut(s) | 1685 |
| BbvI | GCAGC | 3 cut(s) | 309, 1174, 1312 |
| BceAI | ACGGC | 2 cut(s) | 893, 1675 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 971, 1005 |
| BciT130I | CCWGG | 2 cut(s) | 624, 1532 |
| BcoDI | GTCTC | 6 cut(s) | 297, 391, 447, 619, 756, 1699 |
| BcuI | ACTAGT | 1 cut(s) | 1547 |
| BfaI | CTAG | 8 cut(s) | 150, 228, 519, 1074, 1122, 1194, 1476, 1548 |
| BisI | GCNGC | 3 cut(s) | 298, 1188, 1326 |
| BlsI | GCNGC | 3 cut(s) | 299, 1189, 1327 |
| Bme1390I | CCNGG | 2 cut(s) | 624, 1532 |
| Bme18I | GGWCC | 3 cut(s) | 292, 337, 515 |
| BmeT110I | CYCGRG | 3 cut(s) | 444, 881, 1182 |
| BmgT120I | GGNCC | 4 cut(s) | 292, 337, 515, 791 |
| BmiI | GGNNCC | 7 cut(s) | 330, 338, 384, 390, 711, 831, 1273 |
| BmrFI | CCNGG | 2 cut(s) | 624, 1532 |
| BmrI | ACTGGG | 2 cut(s) | 555, 747 |
| BmsI | GCATC | 3 cut(s) | 125, 1391, 1401 |
| BmuI | ACTGGG | 2 cut(s) | 555, 747 |
| BpiI | GAAGAC | 1 cut(s) | 875 |
| BpmI | CTGGAG | 2 cut(s) | 816, 1557 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1685 |
| Bpu14I | TTCGAA | 1 cut(s) | 991 |
| BpuEI | CTTGAG | 4 cut(s) | 967, 1003, 1250, 1314 |
| Bsa29I | ATCGAT | 1 cut(s) | 196 |
| BsaBI | GATNNNNATC | 1 cut(s) | 387 |
| BsaHI | GRCGYC | 2 cut(s) | 692, 1509 |
| BsaJI | CCNNGG | 2 cut(s) | 332, 856 |
| BsaWI | WCCGGW | 4 cut(s) | 28, 385, 919, 1699 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 145, 175, 1555, 1585 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 524, 572, 857 |
| Bse118I | RCCGGY | 2 cut(s) | 919, 1117 |
| Bse1I | ACTGG | 9 cut(s) | 379, 550, 653, 742, 793, 1000, 1063, 1275, 1422 |
| Bse8I | GATNNNNATC | 1 cut(s) | 387 |
| BseAI | TCCGGA | 3 cut(s) | 28, 385, 1699 |
| BseBI | CCWGG | 2 cut(s) | 624, 1532 |
| BseCI | ATCGAT | 1 cut(s) | 196 |
| BseDI | CCNNGG | 2 cut(s) | 332, 856 |
| BseGI | GGATG | 2 cut(s) | 92, 1741 |
| BseJI | GATNNNNATC | 1 cut(s) | 387 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 524, 572, 857 |
| BseMII | CTCAG | 4 cut(s) | 678, 1083, 1349, 1676 |
| BseNI | ACTGG | 9 cut(s) | 379, 550, 653, 742, 793, 1000, 1063, 1275, 1422 |
| BseRI | GAGGAG | 2 cut(s) | 1661, 1664 |
| BseXI | GCAGC | 3 cut(s) | 309, 1174, 1312 |
| BseYI | CCCAGC | 1 cut(s) | 1611 |
| BsgI | GTGCAG | 1 cut(s) | 845 |
| Bsh1236I | CGCG | 1 cut(s) | 776 |
| BshFI | GGCC | 3 cut(s) | 792, 1299, 1690 |
| BshTI | ACCGGT | 1 cut(s) | 919 |
| BshVI | ATCGAT | 1 cut(s) | 196 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1266, 1363 |
| BsiHKCI | CYCGRG | 3 cut(s) | 444, 881, 1182 |
| BsiSI | CCGG | 5 cut(s) | 29, 386, 920, 1118, 1700 |
| BslFI | GGGAC | 1 cut(s) | 350 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 524, 572, 857 |
| BsmAI | GTCTC | 6 cut(s) | 297, 391, 447, 619, 756, 1699 |
| BsmBI | CGTCTC | 2 cut(s) | 391, 756 |
| BsmFI | GGGAC | 1 cut(s) | 350 |
| BsnI | GGCC | 3 cut(s) | 792, 1299, 1690 |
| BsoBI | CYCGRG | 3 cut(s) | 444, 881, 1182 |
| Bsp119I | TTCGAA | 1 cut(s) | 991 |
| Bsp1286I | GDGCHC | 3 cut(s) | 227, 1266, 1363 |
| Bsp13I | TCCGGA | 3 cut(s) | 28, 385, 1699 |
| Bsp19I | CCATGG | 1 cut(s) | 332 |
| BspACI | CCGC | 4 cut(s) | 295, 776, 1041, 1323 |
| BspANI | GGCC | 3 cut(s) | 792, 1299, 1690 |
| BspCNI | CTCAG | 4 cut(s) | 677, 1084, 1348, 1677 |
| BspDI | ATCGAT | 1 cut(s) | 196 |
| BspEI | TCCGGA | 3 cut(s) | 28, 385, 1699 |
| BspFNI | CGCG | 1 cut(s) | 776 |
| BspLI | GGNNCC | 7 cut(s) | 330, 338, 384, 390, 711, 831, 1273 |
| BspQI | GCTCTTC | 1 cut(s) | 1420 |
| BspT104I | TTCGAA | 1 cut(s) | 991 |
| BsrFI | RCCGGY | 2 cut(s) | 919, 1117 |
| BsrI | ACTGG | 9 cut(s) | 379, 550, 653, 742, 793, 1000, 1063, 1275, 1422 |
| BssAI | RCCGGY | 2 cut(s) | 919, 1117 |
| BssECI | CCNNGG | 2 cut(s) | 332, 856 |
| BssNI | GRCGYC | 2 cut(s) | 692, 1509 |
| BssT1I | CCWWGG | 2 cut(s) | 332, 856 |
| Bst2UI | CCWGG | 2 cut(s) | 624, 1532 |
| Bst4CI | ACNGT | 5 cut(s) | 457, 1358, 1526, 1593, 1674 |
| Bst6I | CTCTTC | 5 cut(s) | 103, 576, 1420, 1435, 1578 |
| BstACI | GRCGYC | 2 cut(s) | 692, 1509 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 248 |
| BstBI | TTCGAA | 1 cut(s) | 991 |
| BstC8I | GCNNGC | 4 cut(s) | 54, 828, 1041, 1199 |
| BstDEI | CTNAG | 6 cut(s) | 359, 664, 1092, 1335, 1598, 1685 |
| BstDSI | CCRYGG | 1 cut(s) | 332 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 855 |
| BstF5I | GGATG | 2 cut(s) | 92, 1741 |
| BstFNI | CGCG | 1 cut(s) | 776 |
| BstHHI | GCGC | 1 cut(s) | 776 |
| BstMAI | GTCTC | 6 cut(s) | 297, 391, 447, 619, 756, 1699 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 248, 595, 773, 907, 1331 |
| BstNI | CCWGG | 2 cut(s) | 624, 1532 |
| BstNSI | RCATGY | 2 cut(s) | 56, 251 |
| BstSCI | CCNGG | 2 cut(s) | 622, 1530 |
| BstUI | CGCG | 1 cut(s) | 776 |
| BstV1I | GCAGC | 3 cut(s) | 309, 1174, 1312 |
| BstV2I | GAAGAC | 1 cut(s) | 875 |
| BstX2I | RGATCY | 5 cut(s) | 328, 382, 388, 860, 1465 |
| BstYI | RGATCY | 5 cut(s) | 328, 382, 388, 860, 1465 |
| Bsu15I | ATCGAT | 1 cut(s) | 196 |
| BsuRI | GGCC | 3 cut(s) | 792, 1299, 1690 |
| BsuTUI | ATCGAT | 1 cut(s) | 196 |
| BtgI | CCRYGG | 1 cut(s) | 332 |
| BtsCI | GGATG | 2 cut(s) | 92, 1741 |
| BtsIMutI | CAGTG | 6 cut(s) | 462, 1144, 1282, 1363, 1429, 1531 |
| Cac8I | GCNNGC | 4 cut(s) | 54, 828, 1041, 1199 |
| CaiI | CAGNNNCTG | 1 cut(s) | 113 |
| CfoI | GCGC | 1 cut(s) | 776 |
| Cfr10I | RCCGGY | 2 cut(s) | 919, 1117 |
| Cfr13I | GGNCC | 4 cut(s) | 292, 337, 515, 791 |
| ClaI | ATCGAT | 1 cut(s) | 196 |
| CseI | GACGC | 1 cut(s) | 1498 |
| Csp6I | GTAC | 4 cut(s) | 608, 735, 1245, 1675 |
| CspAI | ACCGGT | 1 cut(s) | 919 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 966, 1001 |
| CviAII | CATG | 7 cut(s) | 53, 248, 333, 808, 1288, 1714, 1721 |
| CviQI | GTAC | 4 cut(s) | 608, 735, 1245, 1675 |
| DdeI | CTNAG | 6 cut(s) | 359, 664, 1092, 1335, 1598, 1685 |
| EaeI | YGGCCR | 1 cut(s) | 1297 |
| Eam1104I | CTCTTC | 5 cut(s) | 103, 576, 1420, 1435, 1578 |
| EarI | CTCTTC | 5 cut(s) | 103, 576, 1420, 1435, 1578 |
| Ecl136II | GAGCTC | 1 cut(s) | 1264 |
| Eco130I | CCWWGG | 2 cut(s) | 332, 856 |
| Eco24I | GRGCYC | 2 cut(s) | 227, 1266 |
| Eco32I | GATATC | 1 cut(s) | 1293 |
| Eco47I | GGWCC | 3 cut(s) | 292, 337, 515 |
| Eco53kI | GAGCTC | 1 cut(s) | 1264 |
| Eco57I | CTGAAG | 4 cut(s) | 600, 834, 915, 1385 |
| Eco88I | CYCGRG | 3 cut(s) | 444, 881, 1182 |
| EcoICRI | GAGCTC | 1 cut(s) | 1264 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 855 |
| EcoO109I | RGGNCCY | 1 cut(s) | 337 |
| EcoRI | GAATTC | 1 cut(s) | 955 |
| EcoRII | CCWGG | 2 cut(s) | 622, 1530 |
| EcoRV | GATATC | 1 cut(s) | 1293 |
| EcoT14I | CCWWGG | 2 cut(s) | 332, 856 |
| EcoT22I | ATGCAT | 1 cut(s) | 253 |
| EcoT38I | GRGCYC | 2 cut(s) | 227, 1266 |
| ErhI | CCWWGG | 2 cut(s) | 332, 856 |
| Esp3I | CGTCTC | 2 cut(s) | 391, 756 |
| FaeI | CATG | 7 cut(s) | 56, 251, 336, 811, 1291, 1717, 1724 |
| FaqI | GGGAC | 1 cut(s) | 350 |
| FatI | CATG | 7 cut(s) | 52, 247, 332, 807, 1287, 1713, 1720 |
| FauI | CCCGC | 2 cut(s) | 769, 1048 |
| Fnu4HI | GCNGC | 3 cut(s) | 298, 1188, 1326 |
| FokI | GGATG | 1 cut(s) | 79 |
| FriOI | GRGCYC | 2 cut(s) | 227, 1266 |
| Fsp4HI | GCNGC | 3 cut(s) | 298, 1188, 1326 |
| FspBI | CTAG | 8 cut(s) | 150, 228, 519, 1074, 1122, 1194, 1476, 1548 |
| GlaI | GCGC | 1 cut(s) | 775 |
| GluI | GCNGC | 3 cut(s) | 298, 1188, 1326 |
| GsaI | CCCAGC | 1 cut(s) | 1615 |
| GsuI | CTGGAG | 2 cut(s) | 816, 1557 |
| HaeIII | GGCC | 3 cut(s) | 792, 1299, 1690 |
| HapII | CCGG | 5 cut(s) | 29, 386, 920, 1118, 1700 |
| HgaI | GACGC | 1 cut(s) | 1498 |
| HhaI | GCGC | 1 cut(s) | 776 |
| Hin1I | GRCGYC | 2 cut(s) | 692, 1509 |
| Hin1II | CATG | 7 cut(s) | 56, 251, 336, 811, 1291, 1717, 1724 |
| Hin6I | GCGC | 1 cut(s) | 774 |
| HinP1I | GCGC | 1 cut(s) | 774 |
| HinfI | GANTC | 7 cut(s) | 110, 170, 277, 612, 949, 1151, 1658 |
| HpaII | CCGG | 5 cut(s) | 29, 386, 920, 1118, 1700 |
| HphI | GGTGA | 4 cut(s) | 23, 1010, 1387, 1640 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 1493 |
| Hpy188I | TCNGA | 7 cut(s) | 109, 540, 645, 954, 964, 1338, 1365 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 1493 |
| Hpy99I | CGWCG | 1 cut(s) | 1514 |
| HpyAV | CCTTC | 7 cut(s) | 576, 677, 721, 939, 1291, 1329, 1494 |
| HpyCH4III | ACNGT | 5 cut(s) | 457, 1358, 1526, 1593, 1674 |
| HpyCH4IV | ACGT | 3 cut(s) | 165, 692, 749 |
| HpyCH4V | TGCA | 6 cut(s) | 116, 242, 251, 826, 1349, 1382 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 248, 595, 773, 907, 1331 |
| HpyF3I | CTNAG | 6 cut(s) | 359, 664, 1092, 1335, 1598, 1685 |
| HpySE526I | ACGT | 3 cut(s) | 165, 692, 749 |
| Hsp92I | GRCGYC | 2 cut(s) | 692, 1509 |
| Hsp92II | CATG | 7 cut(s) | 56, 251, 336, 811, 1291, 1717, 1724 |
| HspAI | GCGC | 1 cut(s) | 774 |
| Kpn2I | TCCGGA | 3 cut(s) | 28, 385, 1699 |
| LguI | GCTCTTC | 1 cut(s) | 1420 |
| LmnI | GCTCC | 9 cut(s) | 31, 153, 575, 835, 1018, 1237, 1261, 1271, 1681 |
| Lsp1109I | GCAGC | 3 cut(s) | 309, 1174, 1312 |
| LweI | GCATC | 3 cut(s) | 125, 1391, 1401 |
| MaeI | CTAG | 8 cut(s) | 150, 228, 519, 1074, 1122, 1194, 1476, 1548 |
| MaeII | ACGT | 3 cut(s) | 165, 692, 749 |
| MaeIII | GTNAC | 6 cut(s) | 161, 415, 488, 659, 1478, 1516 |
| MfeI | CAATTG | 1 cut(s) | 911 |
| MflI | RGATCY | 5 cut(s) | 328, 382, 388, 860, 1465 |
| MhlI | GDGCHC | 3 cut(s) | 227, 1266, 1363 |
| MlsI | TGGCCA | 1 cut(s) | 1299 |
| MluCI | AATT | 4 cut(s) | 174, 211, 911, 955 |
| MluNI | TGGCCA | 1 cut(s) | 1299 |
| MlyI | GAGTC | 3 cut(s) | 286, 621, 958 |
| MmeI | TCCRAC | 1 cut(s) | 668 |
| Mox20I | TGGCCA | 1 cut(s) | 1299 |
| Mph1103I | ATGCAT | 1 cut(s) | 253 |
| MroI | TCCGGA | 3 cut(s) | 28, 385, 1699 |
| MscI | TGGCCA | 1 cut(s) | 1299 |
| MseI | TTAA | 7 cut(s) | 270, 452, 746, 785, 804, 1146, 1744 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1548 |
| Msp20I | TGGCCA | 1 cut(s) | 1299 |
| MspA1I | CMGCKG | 3 cut(s) | 1043, 1201, 1325 |
| MspI | CCGG | 5 cut(s) | 29, 386, 920, 1118, 1700 |
| MspR9I | CCNGG | 2 cut(s) | 624, 1532 |
| MunI | CAATTG | 1 cut(s) | 911 |
| MvaI | CCWGG | 2 cut(s) | 624, 1532 |
| MvnI | CGCG | 1 cut(s) | 776 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 248, 595, 773, 907, 1331 |
| NcoI | CCATGG | 1 cut(s) | 332 |
| NlaIII | CATG | 7 cut(s) | 56, 251, 336, 811, 1291, 1717, 1724 |
| NlaIV | GGNNCC | 7 cut(s) | 330, 338, 384, 390, 711, 831, 1273 |
| NmeAIII | GCCGAG | 1 cut(s) | 1587 |
| NmuCI | GTSAC | 3 cut(s) | 161, 1478, 1516 |
| NsiI | ATGCAT | 1 cut(s) | 253 |
| NspI | RCATGY | 2 cut(s) | 56, 251 |
| NspV | TTCGAA | 1 cut(s) | 991 |
| PaeI | GCATGC | 1 cut(s) | 56 |
| PaeR7I | CTCGAG | 3 cut(s) | 444, 881, 1182 |
| PciSI | GCTCTTC | 1 cut(s) | 1420 |
| PfeI | GAWTC | 4 cut(s) | 110, 170, 1151, 1658 |
| PflFI | GACNNNGTC | 1 cut(s) | 1526 |
| PinAI | ACCGGT | 1 cut(s) | 919 |
| PkrI | GCNGC | 3 cut(s) | 299, 1189, 1327 |
| PleI | GAGTC | 3 cut(s) | 285, 620, 957 |
| PpsI | GAGTC | 3 cut(s) | 285, 620, 957 |
| PpuMI | RGGWCCY | 1 cut(s) | 337 |
| Psp124BI | GAGCTC | 1 cut(s) | 1266 |
| Psp5II | RGGWCCY | 1 cut(s) | 337 |
| Psp6I | CCWGG | 2 cut(s) | 622, 1530 |
| PspFI | CCCAGC | 1 cut(s) | 1611 |
| PspGI | CCWGG | 2 cut(s) | 622, 1530 |
| PspN4I | GGNNCC | 7 cut(s) | 330, 338, 384, 390, 711, 831, 1273 |
| PspPI | GGNCC | 4 cut(s) | 292, 337, 515, 791 |
| PspPPI | RGGWCCY | 1 cut(s) | 337 |
| PspXI | VCTCGAGB | 2 cut(s) | 881, 1182 |
| PstNI | CAGNNNCTG | 1 cut(s) | 113 |
| PsuI | RGATCY | 5 cut(s) | 328, 382, 388, 860, 1465 |
| PsyI | GACNNNGTC | 1 cut(s) | 1526 |
| PvuII | CAGCTG | 1 cut(s) | 1201 |
| RsaI | GTAC | 4 cut(s) | 609, 736, 1246, 1676 |
| RsaNI | GTAC | 4 cut(s) | 608, 735, 1245, 1675 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1548 |
| SacI | GAGCTC | 1 cut(s) | 1266 |
| SapI | GCTCTTC | 1 cut(s) | 1420 |
| SaqAI | TTAA | 7 cut(s) | 270, 452, 746, 785, 804, 1146, 1744 |
| SatI | GCNGC | 3 cut(s) | 298, 1188, 1326 |
| Sau96I | GGNCC | 4 cut(s) | 292, 337, 515, 791 |
| SchI | GAGTC | 3 cut(s) | 286, 621, 958 |
| ScrFI | CCNGG | 2 cut(s) | 624, 1532 |
| SduI | GDGCHC | 3 cut(s) | 227, 1266, 1363 |
| SfaNI | GCATC | 3 cut(s) | 125, 1391, 1401 |
| Sfr274I | CTCGAG | 3 cut(s) | 444, 881, 1182 |
| SfuI | TTCGAA | 1 cut(s) | 991 |
| SinI | GGWCC | 3 cut(s) | 292, 337, 515 |
| SlaI | CTCGAG | 3 cut(s) | 444, 881, 1182 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1548 |
| SmlI | CTYRAG | 7 cut(s) | 444, 881, 946, 1018, 1182, 1265, 1329 |
| SmoI | CTYRAG | 7 cut(s) | 444, 881, 946, 1018, 1182, 1265, 1329 |
| SpeI | ACTAGT | 1 cut(s) | 1547 |
| SphI | GCATGC | 1 cut(s) | 56 |
| Sse9I | AATT | 4 cut(s) | 174, 211, 911, 955 |
| SsiI | CCGC | 4 cut(s) | 295, 776, 1041, 1323 |
| SspMI | CTAG | 8 cut(s) | 150, 228, 519, 1074, 1122, 1194, 1476, 1548 |
| SstI | GAGCTC | 1 cut(s) | 1266 |
| StyD4I | CCNGG | 2 cut(s) | 622, 1530 |
| StyI | CCWWGG | 2 cut(s) | 332, 856 |
| TaaI | ACNGT | 5 cut(s) | 457, 1358, 1526, 1593, 1674 |
| TaiI | ACGT | 3 cut(s) | 168, 695, 752 |
| TaqI | TCGA | 8 cut(s) | 196, 445, 723, 882, 991, 1183, 1308, 1512 |
| TasI | AATT | 4 cut(s) | 174, 211, 911, 955 |
| TatI | WGTACW | 3 cut(s) | 734, 1244, 1674 |
| TfiI | GAWTC | 4 cut(s) | 110, 170, 1151, 1658 |
| Tru1I | TTAA | 7 cut(s) | 270, 452, 746, 785, 804, 1146, 1744 |
| Tru9I | TTAA | 7 cut(s) | 270, 452, 746, 785, 804, 1146, 1744 |
| TscAI | CASTG | 6 cut(s) | 462, 1144, 1282, 1363, 1429, 1531 |
| TseFI | GTSAC | 3 cut(s) | 161, 1478, 1516 |
| TseI | GCWGC | 3 cut(s) | 297, 1187, 1325 |
| Tsp45I | GTSAC | 3 cut(s) | 161, 1478, 1516 |
| TspDTI | ATGAA | 2 cut(s) | 167, 1737 |
| TspGWI | ACGGA | 1 cut(s) | 510 |
| TspRI | CASTG | 6 cut(s) | 462, 1144, 1282, 1363, 1429, 1531 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1526 |
| VpaK11BI | GGWCC | 3 cut(s) | 292, 337, 515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 855 |
| XapI | RAATTY | 1 cut(s) | 955 |
| XceI | RCATGY | 2 cut(s) | 56, 251 |
| XhoI | CTCGAG | 3 cut(s) | 444, 881, 1182 |
| XspI | CTAG | 8 cut(s) | 150, 228, 519, 1074, 1122, 1194, 1476, 1548 |
| ZraI | GACGTC | 1 cut(s) | 693 |
| Zsp2I | ATGCAT | 1 cut(s) | 253 |