RLG00000000613

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
2611992 .. 2615194
3203 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000613

Sequence Viewer

Length: 1830 bp
ATGGAAAGAAGTGAACCCACATTAGTTCCAGAATGGCTGAGAAGTACAGGCAGTGTTACTGGGGGTGGCAGTTCAACCCACCATTTTGCATCATCTTCAGATGTTCCGTCCTCGGCTCATCACATGAGAAATAGACCTTCAAAGAGCATAACTGAATTTGATACCCCTCGTTCTCCTTATTTGGACCGCTCTTCCTCCTCTAATTCCCGGAGGAGTTCTAGCAATGGTTCAGCAAAGCATGCTTACAGTAGTTTTAACAGAAGCCACCGTGACAAGGACCGCGAAAAGGAAAAAGAAAGATTAAATTTTGGTGAACCTTGGGACCGTGACTGTTCTGACCCTCTGGGAAGCTTGTATACCAGTAAGGACCATTTGCGACGTTCCCAGTCTTCGCTTTCCAGGAATAAGAGTGAAGTGTTGCCCCGAAGAGCTGCTATTGATTCAAAAAGTTGTAGCAACAGCAGTCATAATAATGGCAATGGTCTGATTTCTGGGGTTGGAGTTGGTATTCAGAATACTGTGTTTGATAAGGATTTTCCCTCACTTGGAACTGAAGAAAGGCAAGGTGTGTCTGATATTGGCAGAGTCCCATCTCCGGGATTTACCTCAGCTGTTCAGAGCCTGCCTGTTGGCAATTCAGCTTTAATGGGGGGAGAGCAATTTAAATCAGCTTTGGCAGAGGTGCCTAATGCTATAATTGGAAGCAGTAGCTCAGGATCATTTTCGGTTCAACCAACTGTTACTGCTACTTCAGTGTCGGGGGCTTCCATTGCAACGGCTGGTCTTAACATGGCTGAAGCATTGGCGCAAGCTCCAGCAAGAGCTCGCACTGCTCCTCAGTTATCTATCAAGACACAACGGCTTGAGGAATTGGCTCTCAAGCAGTCGAGGCAATTAATACCAGTGACACCTTCAATGCCAAAATCTTCAGCTCTTAATTCTTCTGACAAGTTAAAGCCCAAAACAGCAGTCAGAGCTGGTGAGATGAATGCACCTGTCAAGGGTGGGCAGCAGCAGCCCTCTCAGTCACACCATGCCAATCAATCTCTTCATGGGGGGCCTGTCAAGTCTGATGCTCCAAAGACATCTCATGGGAAGTTCCTTGTTCTCAAACCAGTATGGGAAAATGGTATCTCTTCTTCTCCAAAGGATGTCACTAGCCCCACAAGTAATGCAAGCAGCAGAGCAGCAAATAGCCCACTTGCTGTTGCTCCTCCAGTTGTGTCCGCTTCTTCAAGGAGCCCTAACAATCCAAAGCTTTCGGCGGTGGAAAGAAAGGTAGCTGCCTTGGATCTGAAATCTGGAGCCACTTTGGAAAAGAGACCTTCTTTGTCTCAAGTCCAAAGCCGGAATGATTTCTTTAATCTCCTAAAGAAGAAAACCTCAGTGAACAGTTCAAATACTCTCCCAGATTCAGGCCCTAATATTTCATCTCCCACCATGGAGAAATCTGGTGACATAACTAGGGAAGTATTCAGTGATCCTGCGAGCCCTCACATTGAAAATGGTGGTGAGGTGACTGGCAATAGTGATAGCTCTGAAGAGGTTCAGAGATTTTCTGGTACTGGCCCAAGTGCAGCAGTTTATCCAGATGAGGAAGAGGCTCGTTTCCTTCGTTCTCTTGGATGGGAGGAAAATTCTGGTGATGATGGCGGTCTAACAGAAGAAGAGATCAATGCCTTTTATGACCAGTATATGAAATCAAGACCATCTCTCAAACTGAATCGAGGCATGCAGCCGAAGCCTTCAATGCTGCCTGAATCTCATGCAATTAATTTGGATGGGGCAACTACTGAACTGAGCTCATCTGACTCTGGGTCTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

610

Amino Acids

64.69

Weight (kDa)

8.79

Isoelectric Point (pI)

63.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AccBSI CCGCTC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 356
AccII CGCG 1 cut(s) 282
AciI CCGC 5 cut(s) 187, 280, 1227, 1265, 1653
AclWI GGATC 3 cut(s) 724, 1299, 1475
AcsI RAATTY 3 cut(s) 155, 304, 1636
AcuI CTGAAG 6 cut(s) 81, 573, 735, 816, 912, 1560
AfaI GTAC 2 cut(s) 46, 1564
AfiI CCNNNNNNNGG 7 cut(s) 274, 286, 545, 595, 596, 1001, 1415
AgsI TTSAA 9 cut(s) 75, 141, 444, 731, 915, 1236, 1398, 1502, 1749
AhdI GACNNNNNGTC 1 cut(s) 1816
AjnI CCWGG 1 cut(s) 398
Alw21I GWGCWC 2 cut(s) 826, 1805
Alw26I GTCTC 2 cut(s) 1315, 1338
AlwI GGATC 3 cut(s) 724, 1299, 1475
AlwNI CAGNNNCTG 1 cut(s) 622
AoxI GGCC 3 cut(s) 1058, 1417, 1567
ApoI RAATTY 3 cut(s) 155, 304, 1636
ArsI GACNNNNNNTTYG 2 cut(s) 954, 986
AseI ATTAAT 2 cut(s) 896, 1773
Asp700I GAANNNNTTC 2 cut(s) 1355, 1545
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 7 cut(s) 184, 277, 322, 367, 1058, 1418, 1568
AsuC2I CCSGG 2 cut(s) 208, 597
AsuHPI GGTGA 6 cut(s) 323, 992, 1466, 1523, 1528, 1655
AvaII GGWCC 4 cut(s) 184, 277, 322, 367
BanI GGYRCC 1 cut(s) 682
BanII GRGCYC 4 cut(s) 826, 1244, 1493, 1805
BarI GAAGNNNNNNTAC 4 cut(s) 340, 372, 1123, 1155
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 826, 1805
BbvCI CCTCAGC 1 cut(s) 607
BccI CCATC 5 cut(s) 598, 1620, 1643, 1717, 1775
BceAI ACGGC 2 cut(s) 792, 875
BciT130I CCWGG 1 cut(s) 400
BcnI CCSGG 2 cut(s) 208, 597
BcoDI GTCTC 2 cut(s) 1315, 1338
BfaI CTAG 3 cut(s) 219, 1158, 1464
Bme1390I CCNGG 3 cut(s) 208, 400, 597
Bme18I GGWCC 4 cut(s) 184, 277, 322, 367
BmeRI GACNNNNNGTC 1 cut(s) 1816
BmgT120I GGNCC 7 cut(s) 184, 277, 322, 367, 1058, 1418, 1568
BmiI GGNNCC 5 cut(s) 323, 684, 1059, 1241, 1306
BmrFI CCNGG 3 cut(s) 208, 400, 597
BmrI ACTGGG 2 cut(s) 69, 379
BmsI GCATC 2 cut(s) 98, 1063
BmuI ACTGGG 2 cut(s) 69, 379
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 3 cut(s) 798, 1200, 1323
Bpu10I CCTNAGC 2 cut(s) 607, 712
BpuEI CTTGAG 3 cut(s) 863, 884, 1320
BpuMI CCSGG 2 cut(s) 208, 597
BsaI GGTCTC 1 cut(s) 1315
BsaJI CCNNGG 4 cut(s) 111, 317, 1287, 1440
Bsc4I CCNNNNNNNGG 7 cut(s) 274, 286, 545, 595, 596, 1001, 1415
Bse1I ACTGG 9 cut(s) 64, 360, 385, 902, 1115, 1217, 1525, 1570, 1690
Bse3DI GCAATG 3 cut(s) 229, 484, 768
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 4 cut(s) 111, 317, 1287, 1440
BseGI GGATG 3 cut(s) 1156, 1631, 1786
BseLI CCNNNNNNNGG 7 cut(s) 274, 286, 545, 595, 596, 1001, 1415
BseMI GCAATG 3 cut(s) 229, 484, 768
BseMII CTCAG 7 cut(s) 29, 621, 726, 851, 1037, 1398, 1790
BseNI ACTGG 9 cut(s) 64, 360, 385, 902, 1115, 1217, 1525, 1570, 1690
BseRI GAGGAG 4 cut(s) 187, 226, 825, 1203
BsgI GTGCAG 1 cut(s) 1596
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 1060, 1419, 1569
BshNI GGYRCC 1 cut(s) 682
BsiHKAI GWGCWC 2 cut(s) 826, 1805
BsiSI CCGG 3 cut(s) 208, 596, 1348
BslFI GGGAC 2 cut(s) 335, 572
BslI CCNNNNNNNGG 7 cut(s) 274, 286, 545, 595, 596, 1001, 1415
BsmAI GTCTC 2 cut(s) 1315, 1338
BsmFI GGGAC 2 cut(s) 335, 572
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 3 cut(s) 1060, 1419, 1569
Bso31I GGTCTC 1 cut(s) 1315
Bsp1286I GDGCHC 4 cut(s) 826, 1244, 1493, 1805
Bsp143I GATC 4 cut(s) 716, 1291, 1480, 1671
Bsp19I CCATGG 1 cut(s) 1440
BspACI CCGC 5 cut(s) 187, 280, 1227, 1265, 1653
BspANI GGCC 3 cut(s) 1060, 1419, 1569
BspCNI CTCAG 7 cut(s) 30, 620, 725, 850, 1036, 1397, 1791
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 5 cut(s) 323, 684, 1059, 1241, 1306
BspPI GGATC 3 cut(s) 724, 1299, 1475
BspQI GCTCTTC 2 cut(s) 196, 421
BspT107I GGYRCC 1 cut(s) 682
BspTNI GGTCTC 1 cut(s) 1315
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 3 cut(s) 229, 484, 768
BsrI ACTGG 9 cut(s) 64, 360, 385, 902, 1115, 1217, 1525, 1570, 1690
BssECI CCNNGG 4 cut(s) 111, 317, 1287, 1440
BssMI GATC 4 cut(s) 716, 1291, 1480, 1671
BssNAI GTATAC 1 cut(s) 357
BssT1I CCWWGG 3 cut(s) 317, 1287, 1440
Bst1107I GTATAC 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 7 cut(s) 248, 269, 326, 332, 520, 739, 1394
Bst6I CTCTTC 7 cut(s) 196, 421, 1053, 1141, 1536, 1593, 1662
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 7 cut(s) 240, 623, 810, 826, 1177, 1489, 1733
BstDEI CTNAG 7 cut(s) 38, 607, 712, 837, 1023, 1384, 1799
BstDSI CCRYGG 1 cut(s) 1440
BstF5I GGATG 3 cut(s) 1156, 1631, 1786
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 4 cut(s) 719, 1294, 1483, 1674
BstMAI GTCTC 2 cut(s) 1315, 1338
BstMBI GATC 4 cut(s) 716, 1291, 1480, 1671
BstMWI GCNNNNNNNGC 8 cut(s) 239, 770, 830, 889, 974, 1015, 1741, 1750
BstNI CCWGG 1 cut(s) 400
BstNSI RCATGY 2 cut(s) 242, 1735
BstSCI CCNGG 3 cut(s) 206, 398, 595
BstUI CGCG 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 1291
BstYI RGATCY 1 cut(s) 1291
BstZ17I GTATAC 1 cut(s) 357
BsuRI GGCC 3 cut(s) 1060, 1419, 1569
BtgI CCRYGG 1 cut(s) 1440
BtsCI GGATG 3 cut(s) 1156, 1631, 1786
BtsI GCAGTG 2 cut(s) 58, 828
BtsIMutI CAGTG 6 cut(s) 58, 759, 828, 909, 1392, 1483
Cac8I GCNNGC 7 cut(s) 240, 623, 810, 826, 1177, 1489, 1733
CaiI CAGNNNCTG 1 cut(s) 622
CfoI GCGC 1 cut(s) 808
Cfr13I GGNCC 7 cut(s) 184, 277, 322, 367, 1058, 1418, 1568
Csp6I GTAC 2 cut(s) 45, 1563
CviAII CATG 9 cut(s) 124, 239, 790, 1034, 1052, 1091, 1441, 1732, 1766
CviQI GTAC 2 cut(s) 45, 1563
DdeI CTNAG 7 cut(s) 38, 607, 712, 837, 1023, 1384, 1799
DpnI GATC 4 cut(s) 718, 1293, 1482, 1673
DpnII GATC 4 cut(s) 716, 1291, 1480, 1671
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 1816
Eam1104I CTCTTC 7 cut(s) 196, 421, 1053, 1141, 1536, 1593, 1662
Eam1105I GACNNNNNGTC 1 cut(s) 1816
EarI CTCTTC 7 cut(s) 196, 421, 1053, 1141, 1536, 1593, 1662
Ecl136II GAGCTC 2 cut(s) 824, 1803
Eco130I CCWWGG 3 cut(s) 317, 1287, 1440
Eco24I GRGCYC 4 cut(s) 826, 1244, 1493, 1805
Eco31I GGTCTC 1 cut(s) 1315
Eco47I GGWCC 4 cut(s) 184, 277, 322, 367
Eco53kI GAGCTC 2 cut(s) 824, 1803
Eco57I CTGAAG 6 cut(s) 81, 573, 735, 816, 912, 1560
EcoICRI GAGCTC 2 cut(s) 824, 1803
EcoO109I RGGNCCY 2 cut(s) 1058, 1418
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 3 cut(s) 317, 1287, 1440
EcoT38I GRGCYC 4 cut(s) 826, 1244, 1493, 1805
ErhI CCWWGG 3 cut(s) 317, 1287, 1440
FaeI CATG 9 cut(s) 127, 242, 793, 1037, 1055, 1094, 1444, 1735, 1769
FaqI GGGAC 2 cut(s) 335, 572
FatI CATG 9 cut(s) 123, 238, 789, 1033, 1051, 1090, 1440, 1731, 1765
FblI GTMKAC 1 cut(s) 356
FokI GGATG 3 cut(s) 1163, 1638, 1793
FriOI GRGCYC 4 cut(s) 826, 1244, 1493, 1805
FspBI CTAG 3 cut(s) 219, 1158, 1464
GlaI GCGC 1 cut(s) 807
GsuI CTGGAG 3 cut(s) 798, 1200, 1323
HaeIII GGCC 3 cut(s) 1060, 1419, 1569
HapII CCGG 3 cut(s) 208, 596, 1348
HhaI GCGC 1 cut(s) 808
Hin1II CATG 9 cut(s) 127, 242, 793, 1037, 1055, 1094, 1444, 1735, 1769
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HindIII AAGCTT 3 cut(s) 349, 1256, 1824
HinfI GANTC 6 cut(s) 440, 585, 1412, 1723, 1760, 1811
HpaII CCGG 3 cut(s) 208, 596, 1348
HphI GGTGA 6 cut(s) 323, 992, 1466, 1523, 1528, 1655
Hpy166II GTNNAC 4 cut(s) 14, 314, 357, 1390
Hpy188III TCNNGA 6 cut(s) 29, 714, 850, 1302, 1589, 1704
Hpy8I GTNNAC 4 cut(s) 14, 314, 357, 1390
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 5 cut(s) 147, 921, 1335, 1622, 1755
HpyCH4III ACNGT 7 cut(s) 248, 269, 326, 332, 520, 739, 1394
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 7 cut(s) 89, 773, 992, 1175, 1577, 1735, 1769
HpyF10VI GCNNNNNNNGC 8 cut(s) 239, 770, 830, 889, 974, 1015, 1741, 1750
HpyF3I CTNAG 7 cut(s) 38, 607, 712, 837, 1023, 1384, 1799
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 9 cut(s) 127, 242, 793, 1037, 1055, 1094, 1444, 1735, 1769
HspAI GCGC 1 cut(s) 806
Kzo9I GATC 4 cut(s) 716, 1291, 1480, 1671
LguI GCTCTTC 2 cut(s) 196, 421
LmnI GCTCC 6 cut(s) 817, 838, 1081, 1216, 1239, 1304
LweI GCATC 2 cut(s) 98, 1063
MaeI CTAG 3 cut(s) 219, 1158, 1464
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 9 cut(s) 55, 269, 326, 739, 904, 1026, 1153, 1454, 1516
MalI GATC 4 cut(s) 718, 1293, 1482, 1673
MbiI CCGCTC 1 cut(s) 189
MboI GATC 4 cut(s) 716, 1291, 1480, 1671
MflI RGATCY 1 cut(s) 1291
MhlI GDGCHC 4 cut(s) 826, 1244, 1493, 1805
MlyI GAGTC 2 cut(s) 594, 1805
MmeI TCCRAC 1 cut(s) 478
MroXI GAANNNNTTC 2 cut(s) 1355, 1545
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 3 cut(s) 208, 596, 1348
MspR9I CCNGG 3 cut(s) 208, 400, 597
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 1 cut(s) 400
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 8 cut(s) 239, 770, 830, 889, 974, 1015, 1741, 1750
NciI CCSGG 2 cut(s) 208, 597
NcoI CCATGG 1 cut(s) 1440
NdeII GATC 4 cut(s) 716, 1291, 1480, 1671
NlaIII CATG 9 cut(s) 127, 242, 793, 1037, 1055, 1094, 1444, 1735, 1769
NlaIV GGNNCC 5 cut(s) 323, 684, 1059, 1241, 1306
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 7 cut(s) 269, 326, 904, 1026, 1153, 1454, 1516
NspI RCATGY 2 cut(s) 242, 1735
PaeI GCATGC 2 cut(s) 242, 1735
PciSI GCTCTTC 2 cut(s) 196, 421
PcsI WCGNNNNNNNCGW 1 cut(s) 1612
PctI GAATGC 1 cut(s) 994
PdmI GAANNNNTTC 2 cut(s) 1355, 1545
PfeI GAWTC 4 cut(s) 440, 1412, 1723, 1760
PfoI TCCNGGA 3 cut(s) 206, 398, 595
PleI GAGTC 2 cut(s) 593, 1805
PpsI GAGTC 2 cut(s) 593, 1805
PshBI ATTAAT 2 cut(s) 896, 1773
Psp124BI GAGCTC 2 cut(s) 826, 1805
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspN4I GGNNCC 5 cut(s) 323, 684, 1059, 1241, 1306
PspPI GGNCC 7 cut(s) 184, 277, 322, 367, 1058, 1418, 1568
PstNI CAGNNNCTG 1 cut(s) 622
PsuI RGATCY 1 cut(s) 1291
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 2 cut(s) 46, 1564
RsaNI GTAC 2 cut(s) 45, 1563
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 2 cut(s) 826, 1805
SapI GCTCTTC 2 cut(s) 196, 421
Sau3AI GATC 4 cut(s) 716, 1291, 1480, 1671
Sau96I GGNCC 7 cut(s) 184, 277, 322, 367, 1058, 1418, 1568
SchI GAGTC 2 cut(s) 594, 1805
ScrFI CCNGG 3 cut(s) 208, 400, 597
SduI GDGCHC 4 cut(s) 826, 1244, 1493, 1805
SfaNI GCATC 2 cut(s) 98, 1063
SinI GGWCC 4 cut(s) 184, 277, 322, 367
SmiI ATTTAAAT 1 cut(s) 664
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 3 cut(s) 863, 878, 1335
SmoI CTYRAG 3 cut(s) 863, 878, 1335
SphI GCATGC 2 cut(s) 242, 1735
SsiI CCGC 5 cut(s) 187, 280, 1227, 1265, 1653
SspI AATATT 1 cut(s) 1426
SspMI CTAG 3 cut(s) 219, 1158, 1464
SstI GAGCTC 2 cut(s) 826, 1805
StyD4I CCNGG 3 cut(s) 206, 398, 595
StyI CCWWGG 3 cut(s) 317, 1287, 1440
SwaI ATTTAAAT 1 cut(s) 664
TaaI ACNGT 7 cut(s) 248, 269, 326, 332, 520, 739, 1394
TaiI ACGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 887, 1726
TatI WGTACW 1 cut(s) 44
TfiI GAWTC 4 cut(s) 440, 1412, 1723, 1760
TscAI CASTG 6 cut(s) 58, 759, 835, 909, 1392, 1483
TseFI GTSAC 7 cut(s) 269, 326, 904, 1026, 1153, 1454, 1516
Tsp45I GTSAC 7 cut(s) 269, 326, 904, 1026, 1153, 1454, 1516
TspDTI ATGAA 4 cut(s) 1001, 1040, 1419, 1712
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 6 cut(s) 58, 759, 835, 909, 1392, 1483
VpaK11BI GGWCC 4 cut(s) 184, 277, 322, 367
VspI ATTAAT 2 cut(s) 896, 1773
XapI RAATTY 3 cut(s) 155, 304, 1636
XceI RCATGY 2 cut(s) 242, 1735
XmiI GTMKAC 1 cut(s) 356
XmnI GAANNNNTTC 2 cut(s) 1355, 1545
XspI CTAG 3 cut(s) 219, 1158, 1464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.