FvH4_5g38960

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
28776004 .. 28780791
4788 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38960.t3

Sequence Viewer

Length: 1836 bp
ATGGAAAAAAGTGAACCCCCATTAGGCCCATTAGCTCCACAATGGCTGAGAAATACAGGCGGTGTTACTGGGGGTGGCAGTTCAACCCACCACCATTTTGCATCATCTTCAGATGTTCAGCCGGCTCATCACTCAAGAAGTAGAACTACAAAGACCACAAGTGACATTGACCCCACTCGCTCTTCTTATTTGGAACGCTCCTCCTCCTCTAATCCCCGGAGGAGTTCTAGCAATGGTTCTGCAAAGCATGCCTACAGTAGTTTTAGCAGAAGCCACCGTGATAAGGACCGTGAAAAGGAAAAAGAAAGATTAAATTTTGGAGAGCCTTGGGACCGTGACTGTCCTGACCATCTGAGCTTGTATAGCAATAAGGATGCTTTGCGACGTTCCCAGTCTATGAGTTCCAGGAATAAAAGTGAAACTTTGTCCCGAAGAATTGCTATTGACTCAAAAAGTGGTAGCAACAGCATTCATAACAATGGAAATGGTCTGCTTTCTGGGGGTGGAGTTGGTAGTCCGAATGCTGTATTTGATAAGGATTTTCCCTCACTTGGAACTGAAGAAAGGCAAGGCGTGCCTGATATCGGAAGAGTCCCATCTCCGGGGTTTACCTCAGCTGTTCAGAGCCTGCCTGTTGGCAATTCAGCTTTGATTGGGGGAGAGCAATTTAAATCAGCTTTGGCAGAGGTGCCTAATGCTATAATTGGCAGCAGTAGCTCAGGATCATTTTCGGTTCAACCCACTGTTGCTGCTACTTCTGAGTCTGGGGCTTCCGTTGCAATGGCTGGTCTTAATATGGCTGAAGCATTAGTGCAAGCTCCAGCAAGAGCTCGCACTGTTCCTCAGTTATCTATCAGGACACAAAGGCTTGAGGAATTGGCTCTCAAGCAGTCGAGGCAATTAATACCAGTGACACCTTCAATGCCAAAATCTTCAGCTCTTAGTTCTTCTGACAAATTAAAGCCCAAACCAGCAGTCAGAGCTGGTGAGATGATTGCACCTGTGAAGGGTGGGCAGCAGCAGCCCTCTCAATCGCACCATGCCAATCAATCTCTTCATGGGGGGCCTGTCAAGTCTGATGCTCCAAAGACATCTCATGGGAAGGGGTTCCTTGTTCTTAAACCAGTATGGGAAAATGGGATCTCTTCTCCGAAGGATGTCACTAGCCCGACAAGTAATGCCAGCAGCAGAGCAGCAAATAGCCCACTTGCTGTTGCTCCTCCAGTTGTGTCCGCTCCTTCAAGGAGCCCTAACAATCCAAAGCTTTTGGCGGTGGAAAGAAAGGTGGCTGCCTTGGATCTGAAATCTGGAGCCACTTTGGAGAAGAGACCTTCTTTGTCTCAAGTCCAGAGCCGGAATGATTTCTTTAATCTCCTAAAGAAGAAAACCTCAGTGAACAGTTCAATTACTCTCCCAGATTCAGGCCCTAATATTTCACCTCCCACTATAGAGAAATCTGGTGACATAACTGGGGAAGTGTTCAGTGATCCTGCGAGCCCTCACATTGAAAATGGTGGTGAGGTAACTGGCAATGGTGTTAGCTCTGAAGAGGTTCAGAGATTTTCTGGTACTGGCCCAAGTGCAGCAGTTTATCCGGATGAGGAAGAAGCTCGTTTCCTTCGTTCTCTTGGATGGGAGGAAAATTCTGGTGATGATGGCGGTCTAACGGAAGAAGAGATCAATGCCTTCTATGACCAGTATATGAAATTGAGACCATCTCTGAAACTGAATCGAGGCATGCAGCCAAAGCTTTCAACACTGCCTGAATCTCACGCAACTAATTTTGGTGGGGCAACTACTGGACTGAGCTCATCTGACTCTGGGTCTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

612

Amino Acids

64.52

Weight (kDa)

9.11

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AccBSI CCGCTC 1 cut(s) 1235
AccIII TCCGGA 1 cut(s) 1594
AciI CCGC 4 cut(s) 60, 1233, 1271, 1659
AclWI GGATC 4 cut(s) 730, 1148, 1305, 1481
AcsI RAATTY 2 cut(s) 313, 1642
AcuI CTGAAG 5 cut(s) 93, 579, 822, 918, 1566
AfaI GTAC 1 cut(s) 1570
AfiI CCNNNNNNNGG 9 cut(s) 23, 283, 295, 551, 584, 601, 602, 1007, 1421
AgsI TTSAA 7 cut(s) 84, 737, 921, 1242, 1404, 1508, 1755
AhdI GACNNNNNGTC 1 cut(s) 1822
AjnI CCWGG 1 cut(s) 404
Alw21I GWGCWC 2 cut(s) 832, 1811
Alw26I GTCTC 3 cut(s) 1321, 1344, 1705
AlwI GGATC 4 cut(s) 730, 1148, 1305, 1481
AlwNI CAGNNNCTG 1 cut(s) 628
Aor13HI TCCGGA 1 cut(s) 1594
AoxI GGCC 4 cut(s) 25, 1064, 1423, 1573
ApoI RAATTY 2 cut(s) 313, 1642
ArsI GACNNNNNNTTYG 2 cut(s) 960, 992
AseI ATTAAT 1 cut(s) 902
Asp700I GAANNNNTTC 3 cut(s) 1106, 1361, 1551
AspS9I GGNCC 6 cut(s) 26, 286, 331, 1064, 1424, 1574
AsuC2I CCSGG 2 cut(s) 217, 603
AsuHPI GGTGA 5 cut(s) 998, 1428, 1472, 1529, 1661
AvaII GGWCC 2 cut(s) 286, 331
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 4 cut(s) 832, 1250, 1499, 1811
BarI GAAGNNNNNNTAC 2 cut(s) 130, 162
Bbv12I GWGCWC 2 cut(s) 832, 1811
BbvCI CCTCAGC 1 cut(s) 613
BccI CCATC 5 cut(s) 357, 604, 1626, 1649, 1723
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 2 cut(s) 217, 603
BcoDI GTCTC 3 cut(s) 1321, 1344, 1705
BfaI CTAG 2 cut(s) 228, 1164
BfmI CTRYAG 2 cut(s) 253, 1446
Bme1390I CCNGG 3 cut(s) 217, 406, 603
Bme18I GGWCC 2 cut(s) 286, 331
BmeRI GACNNNNNGTC 1 cut(s) 1822
BmgT120I GGNCC 6 cut(s) 26, 286, 331, 1064, 1424, 1574
BmiI GGNNCC 6 cut(s) 332, 690, 1065, 1109, 1247, 1312
BmrFI CCNGG 3 cut(s) 217, 406, 603
BmrI ACTGGG 3 cut(s) 78, 385, 1479
BmsI GCATC 3 cut(s) 110, 364, 1069
BmuI ACTGGG 3 cut(s) 78, 385, 1479
BplI GAGNNNNNCTC 2 cut(s) 1702, 1734
BpmI CTGGAG 3 cut(s) 804, 1206, 1329
Bpu10I CCTNAGC 2 cut(s) 613, 718
BpuEI CTTGAG 4 cut(s) 118, 869, 890, 1326
BpuMI CCSGG 2 cut(s) 217, 603
BsaI GGTCTC 2 cut(s) 1321, 1705
BsaJI CCNNGG 4 cut(s) 215, 326, 602, 1293
BsaWI WCCGGW 1 cut(s) 1594
Bsc4I CCNNNNNNNGG 9 cut(s) 23, 283, 295, 551, 584, 601, 602, 1007, 1421
Bse118I RCCGGY 1 cut(s) 121
Bse3DI GCAATG 3 cut(s) 238, 786, 1537
BseAI TCCGGA 1 cut(s) 1594
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 4 cut(s) 215, 326, 602, 1293
BseGI GGATG 4 cut(s) 379, 1162, 1603, 1637
BseLI CCNNNNNNNGG 9 cut(s) 23, 283, 295, 551, 584, 601, 602, 1007, 1421
BseMI GCAATG 3 cut(s) 238, 786, 1537
BseMII CTCAG 8 cut(s) 38, 344, 627, 732, 750, 857, 1404, 1796
BseRI GAGGAG 5 cut(s) 190, 193, 196, 235, 1209
BsgI GTGCAG 1 cut(s) 1602
BshFI GGCC 4 cut(s) 27, 1066, 1425, 1575
BshNI GGYRCC 1 cut(s) 688
BsiHKAI GWGCWC 2 cut(s) 832, 1811
BsiSI CCGG 5 cut(s) 122, 217, 602, 1354, 1595
BslFI GGGAC 3 cut(s) 344, 412, 578
BslI CCNNNNNNNGG 9 cut(s) 23, 283, 295, 551, 584, 601, 602, 1007, 1421
BsmAI GTCTC 3 cut(s) 1321, 1344, 1705
BsmFI GGGAC 3 cut(s) 344, 412, 578
BsmI GAATGC 2 cut(s) 468, 526
BsnI GGCC 4 cut(s) 27, 1066, 1425, 1575
Bso31I GGTCTC 2 cut(s) 1321, 1705
Bsp1286I GDGCHC 4 cut(s) 832, 1250, 1499, 1811
Bsp13I TCCGGA 1 cut(s) 1594
Bsp143I GATC 5 cut(s) 722, 1140, 1297, 1486, 1677
BspACI CCGC 4 cut(s) 60, 1233, 1271, 1659
BspANI GGCC 4 cut(s) 27, 1066, 1425, 1575
BspCNI CTCAG 8 cut(s) 39, 345, 626, 731, 751, 856, 1403, 1797
BspEI TCCGGA 1 cut(s) 1594
BspLI GGNNCC 6 cut(s) 332, 690, 1065, 1109, 1247, 1312
BspPI GGATC 4 cut(s) 730, 1148, 1305, 1481
BspQI GCTCTTC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 688
BspTNI GGTCTC 2 cut(s) 1321, 1705
BsrBI CCGCTC 1 cut(s) 1235
BsrDI GCAATG 3 cut(s) 238, 786, 1537
BsrFI RCCGGY 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 4 cut(s) 215, 326, 602, 1293
BssMI GATC 5 cut(s) 722, 1140, 1297, 1486, 1677
BssT1I CCWWGG 2 cut(s) 326, 1293
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 8 cut(s) 257, 278, 290, 335, 341, 745, 838, 1400
Bst6I CTCTTC 7 cut(s) 187, 583, 1059, 1150, 1319, 1542, 1668
BstAPI GCANNNNNTGC 2 cut(s) 248, 574
BstC8I GCNNGC 9 cut(s) 123, 249, 575, 629, 816, 832, 1183, 1495, 1739
BstDEI CTNAG 9 cut(s) 47, 353, 613, 718, 759, 843, 941, 1390, 1805
BstF5I GGATG 4 cut(s) 379, 1162, 1603, 1637
BstKTI GATC 5 cut(s) 725, 1143, 1300, 1489, 1680
BstMAI GTCTC 3 cut(s) 1321, 1344, 1705
BstMBI GATC 5 cut(s) 722, 1140, 1297, 1486, 1677
BstMWI GCNNNNNNNGC 9 cut(s) 248, 363, 574, 714, 776, 895, 980, 1021, 1747
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 2 cut(s) 251, 1741
BstSCI CCNGG 3 cut(s) 215, 404, 601
BstSFI CTRYAG 2 cut(s) 253, 1446
BstX2I RGATCY 2 cut(s) 1140, 1297
BstYI RGATCY 2 cut(s) 1140, 1297
BsuRI GGCC 4 cut(s) 27, 1066, 1425, 1575
BtsCI GGATG 4 cut(s) 379, 1162, 1603, 1637
BtsI GCAGTG 1 cut(s) 1757
BtsIMutI CAGTG 6 cut(s) 741, 834, 915, 1398, 1489, 1757
Cac8I GCNNGC 9 cut(s) 123, 249, 575, 629, 816, 832, 1183, 1495, 1739
CaiI CAGNNNCTG 1 cut(s) 628
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 6 cut(s) 26, 286, 331, 1064, 1424, 1574
Csp6I GTAC 1 cut(s) 1569
CviAII CATG 5 cut(s) 248, 1040, 1058, 1097, 1738
CviQI GTAC 1 cut(s) 1569
DdeI CTNAG 9 cut(s) 47, 353, 613, 718, 759, 843, 941, 1390, 1805
DpnI GATC 5 cut(s) 724, 1142, 1299, 1488, 1679
DpnII GATC 5 cut(s) 722, 1140, 1297, 1486, 1677
DraI TTTAAA 1 cut(s) 670
DriI GACNNNNNGTC 1 cut(s) 1822
Eam1104I CTCTTC 7 cut(s) 187, 583, 1059, 1150, 1319, 1542, 1668
Eam1105I GACNNNNNGTC 1 cut(s) 1822
EarI CTCTTC 7 cut(s) 187, 583, 1059, 1150, 1319, 1542, 1668
Ecl136II GAGCTC 2 cut(s) 830, 1809
Eco130I CCWWGG 2 cut(s) 326, 1293
Eco24I GRGCYC 4 cut(s) 832, 1250, 1499, 1811
Eco31I GGTCTC 2 cut(s) 1321, 1705
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 286, 331
Eco53kI GAGCTC 2 cut(s) 830, 1809
Eco57I CTGAAG 5 cut(s) 93, 579, 822, 918, 1566
EcoICRI GAGCTC 2 cut(s) 830, 1809
EcoO109I RGGNCCY 2 cut(s) 1064, 1424
EcoRII CCWGG 1 cut(s) 404
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 2 cut(s) 326, 1293
EcoT38I GRGCYC 4 cut(s) 832, 1250, 1499, 1811
ErhI CCWWGG 2 cut(s) 326, 1293
FaeI CATG 5 cut(s) 251, 1043, 1061, 1100, 1741
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 3 cut(s) 344, 412, 578
FatI CATG 5 cut(s) 247, 1039, 1057, 1096, 1737
FokI GGATG 4 cut(s) 386, 1169, 1610, 1644
FriOI GRGCYC 4 cut(s) 832, 1250, 1499, 1811
FspBI CTAG 2 cut(s) 228, 1164
GsuI CTGGAG 3 cut(s) 804, 1206, 1329
HaeIII GGCC 4 cut(s) 27, 1066, 1425, 1575
HapII CCGG 5 cut(s) 122, 217, 602, 1354, 1595
Hin1II CATG 5 cut(s) 251, 1043, 1061, 1100, 1741
HindIII AAGCTT 3 cut(s) 1262, 1748, 1830
HinfI GANTC 7 cut(s) 446, 591, 761, 1418, 1729, 1766, 1817
HpaII CCGG 5 cut(s) 122, 217, 602, 1354, 1595
HphI GGTGA 5 cut(s) 998, 1428, 1472, 1529, 1661
Hpy166II GTNNAC 3 cut(s) 14, 609, 1396
Hpy188III TCNNGA 8 cut(s) 135, 344, 429, 720, 856, 1308, 1348, 1595
Hpy8I GTNNAC 3 cut(s) 14, 609, 1396
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 8 cut(s) 927, 1000, 1096, 1147, 1248, 1341, 1628, 1696
HpyCH4III ACNGT 8 cut(s) 257, 278, 290, 335, 341, 745, 838, 1400
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 7 cut(s) 101, 242, 779, 814, 998, 1583, 1741
HpyF10VI GCNNNNNNNGC 9 cut(s) 248, 363, 574, 714, 776, 895, 980, 1021, 1747
HpyF3I CTNAG 9 cut(s) 47, 353, 613, 718, 759, 843, 941, 1390, 1805
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 5 cut(s) 251, 1043, 1061, 1100, 1741
Kpn2I TCCGGA 1 cut(s) 1594
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Kzo9I GATC 5 cut(s) 722, 1140, 1297, 1486, 1677
LguI GCTCTTC 1 cut(s) 187
LmnI GCTCC 8 cut(s) 40, 203, 823, 1087, 1222, 1240, 1245, 1310
LweI GCATC 3 cut(s) 110, 364, 1069
MaeI CTAG 2 cut(s) 228, 1164
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 7 cut(s) 64, 161, 335, 910, 1159, 1460, 1522
MalI GATC 5 cut(s) 724, 1142, 1299, 1488, 1679
MbiI CCGCTC 1 cut(s) 1235
MboI GATC 5 cut(s) 722, 1140, 1297, 1486, 1677
MflI RGATCY 2 cut(s) 1140, 1297
MhlI GDGCHC 4 cut(s) 832, 1250, 1499, 1811
MlyI GAGTC 4 cut(s) 440, 600, 770, 1811
MroI TCCGGA 1 cut(s) 1594
MroNI GCCGGC 1 cut(s) 121
MroXI GAANNNNTTC 3 cut(s) 1106, 1361, 1551
MseI TTAA 7 cut(s) 311, 669, 792, 902, 959, 1119, 1368
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 5 cut(s) 122, 217, 602, 1354, 1595
MspR9I CCNGG 3 cut(s) 217, 406, 603
Mva1269I GAATGC 2 cut(s) 468, 526
MvaI CCWGG 1 cut(s) 406
MwoI GCNNNNNNNGC 9 cut(s) 248, 363, 574, 714, 776, 895, 980, 1021, 1747
NaeI GCCGGC 1 cut(s) 123
NciI CCSGG 2 cut(s) 217, 603
NdeII GATC 5 cut(s) 722, 1140, 1297, 1486, 1677
NgoMIV GCCGGC 1 cut(s) 121
NlaIII CATG 5 cut(s) 251, 1043, 1061, 1100, 1741
NlaIV GGNNCC 6 cut(s) 332, 690, 1065, 1109, 1247, 1312
NmuCI GTSAC 5 cut(s) 161, 335, 910, 1159, 1460
NspI RCATGY 2 cut(s) 251, 1741
PaeI GCATGC 2 cut(s) 251, 1741
PciSI GCTCTTC 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 1618
PctI GAATGC 2 cut(s) 468, 526
PdiI GCCGGC 1 cut(s) 123
PdmI GAANNNNTTC 3 cut(s) 1106, 1361, 1551
PfeI GAWTC 3 cut(s) 1418, 1729, 1766
PfoI TCCNGGA 1 cut(s) 404
PleI GAGTC 4 cut(s) 440, 599, 769, 1811
PpsI GAGTC 4 cut(s) 440, 599, 769, 1811
PshBI ATTAAT 1 cut(s) 902
Psp124BI GAGCTC 2 cut(s) 832, 1811
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 6 cut(s) 332, 690, 1065, 1109, 1247, 1312
PspPI GGNCC 6 cut(s) 26, 286, 331, 1064, 1424, 1574
PstNI CAGNNNCTG 1 cut(s) 628
PsuI RGATCY 2 cut(s) 1140, 1297
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 1 cut(s) 1570
RsaNI GTAC 1 cut(s) 1569
RseI CAYNNNNRTG 1 cut(s) 477
SacI GAGCTC 2 cut(s) 832, 1811
SapI GCTCTTC 1 cut(s) 187
SaqAI TTAA 7 cut(s) 311, 669, 792, 902, 959, 1119, 1368
Sau3AI GATC 5 cut(s) 722, 1140, 1297, 1486, 1677
Sau96I GGNCC 6 cut(s) 26, 286, 331, 1064, 1424, 1574
SchI GAGTC 4 cut(s) 440, 600, 770, 1811
ScrFI CCNGG 3 cut(s) 217, 406, 603
SduI GDGCHC 4 cut(s) 832, 1250, 1499, 1811
SfaNI GCATC 3 cut(s) 110, 364, 1069
SfcI CTRYAG 2 cut(s) 253, 1446
SinI GGWCC 2 cut(s) 286, 331
SmiI ATTTAAAT 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 4 cut(s) 133, 869, 884, 1341
SmoI CTYRAG 4 cut(s) 133, 869, 884, 1341
SphI GCATGC 2 cut(s) 251, 1741
SsiI CCGC 4 cut(s) 60, 1233, 1271, 1659
SspI AATATT 1 cut(s) 1432
SspMI CTAG 2 cut(s) 228, 1164
SstI GAGCTC 2 cut(s) 832, 1811
StyD4I CCNGG 3 cut(s) 215, 404, 601
StyI CCWWGG 2 cut(s) 326, 1293
SwaI ATTTAAAT 1 cut(s) 670
TaaI ACNGT 8 cut(s) 257, 278, 290, 335, 341, 745, 838, 1400
TaiI ACGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 893, 1732
TfiI GAWTC 3 cut(s) 1418, 1729, 1766
Tru1I TTAA 7 cut(s) 311, 669, 792, 902, 959, 1119, 1368
Tru9I TTAA 7 cut(s) 311, 669, 792, 902, 959, 1119, 1368
TscAI CASTG 6 cut(s) 748, 841, 915, 1398, 1489, 1764
TseFI GTSAC 5 cut(s) 161, 335, 910, 1159, 1460
Tsp45I GTSAC 5 cut(s) 161, 335, 910, 1159, 1460
TspDTI ATGAA 3 cut(s) 461, 1046, 1718
TspGWI ACGGA 2 cut(s) 763, 1682
TspRI CASTG 6 cut(s) 748, 841, 915, 1398, 1489, 1764
VpaK11BI GGWCC 2 cut(s) 286, 331
VspI ATTAAT 1 cut(s) 902
XapI RAATTY 2 cut(s) 313, 1642
XceI RCATGY 2 cut(s) 251, 1741
XmnI GAANNNNTTC 3 cut(s) 1106, 1361, 1551
XspI CTAG 2 cut(s) 228, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.