Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031641.1

Orthogroup ID

OG0008452

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1864

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031641.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1031 bp

tgctccttatggaaagaagtgaacccacattagttccagaatggctgagaagtacaggcagtgttactgggggtggcagttcaacccaccattttgcatcatcttcagatgttccgtccttggctcatcacatgagaaatagaccttcaaagagcataactgaatttgatagccctcgttctccttatttggaccgctcttcctcctctaattcccggaggagttctagcaatggttctgcaaagcatgcttacagtagttttaacagaagccaccgtgacaaggaccgcgaaaaggaaaaagaaagattaaattttggcgaaccttgggaccgtgactgttctgaccctctgggaagcttgtataccagtaaggaccatttgcgacgttcccagcctatgctttccaggaataaaagtgaagtgttgccccgaagagctgctattgattcaaaaagttgtagcaacagcagtcataacaatggcaatggtctgatttctggggttggagttggtattcagaatactgtgtttgataaggattttccctcacttggaactgaagaaaggcaaggtgtgcctgatattggcagagtcccatctccgggatttacctcagctgttcagagcctgcctgttggcaattcagctttaattgggggagagcagtttaaatcagctttggcagaggtgcctaatgctataattggaagcagtagctcaggatcattttcggttcaaccaactgttgctgctacttcagtgtcaggggcttccattgcaacggctggtcttaacatggccgaagcattagcgcaagctccagcaagagctcgcaccgctcctcagttatctatcaagacacaaaggcttgaggaattggctctcaagcagtcgaggcaattaataccggtgacaccttcaatgccaaaatcttcagcagttttagttcaccctacaatgagttttaagttcaagttatttatgcagaaggaatacatagaggcctcacttagtattgcagagatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

36.78

Weight (kDa)

9.56

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36990 AT4G08510 AT4G08510
fragaria_vesca	FvH4_5g38960 FvH4_5g38960 FvH4_5g38960 FvH4_5g38960
malus_domestica	MD08G1173100.v1.1 MD15G1358400.v1.1
prunus_persica	Prupe.1G505900_v2.0.a1
pyrus_communis	pycom15g32070 pycom15g32080
rosa_chinensis	RchiOBHm_Chr7g0240931
rosa_laevigata	RLG00000000613
rosa_multiflora	Rmu_sc0001324.1_g000003 Rmu_sc0031641.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219410
rosa_rugosa	Rorug07G0340300
rosa_samantha	Rh7AG494800 Rh7BG466400 Rh7CG512900 Rh7DG479700
rosa_wichuraiana	Rw7G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	690
AccBSI	CCGCTC	2 cut(s)	197, 841
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	290
AciI	CCGC	3 cut(s)	195, 288, 839
AclWI	GGATC	1 cut(s)	732
AcoI	YGGCCR	1 cut(s)	800
AcsI	RAATTY	2 cut(s)	163, 312
AcuI	CTGAAG	4 cut(s)	89, 581, 743, 920
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	6 cut(s)	282, 294, 553, 586, 603, 604
AgeI	ACCGGT	1 cut(s)	909
AgsI	TTSAA	6 cut(s)	83, 149, 452, 739, 923, 975
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	8 cut(s)	359, 439, 619, 649, 679, 719, 820, 832
AluI	AGCT	8 cut(s)	359, 439, 619, 649, 679, 719, 820, 832
Alw21I	GWGCWC	1 cut(s)	834
AlwI	GGATC	1 cut(s)	732
AlwNI	CAGNNNCTG	1 cut(s)	630
AoxI	GGCC	2 cut(s)	800, 1004
ApeKI	GCWGC	2 cut(s)	439, 751
ApoI	RAATTY	2 cut(s)	163, 312
AseI	ATTAAT	1 cut(s)	904
AsiGI	ACCGGT	1 cut(s)	909
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	4 cut(s)	192, 285, 330, 375
AsuC2I	CCSGG	2 cut(s)	216, 605
AsuHPI	GGTGA	2 cut(s)	924, 943
AvaII	GGWCC	4 cut(s)	192, 285, 330, 375
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	834
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
Bbv12I	GWGCWC	1 cut(s)	834
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	2 cut(s)	426, 738
BccI	CCATC	1 cut(s)	606
BceAI	ACGGC	1 cut(s)	800
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	2 cut(s)	216, 605
BfaI	CTAG	1 cut(s)	227
BisI	GCNGC	2 cut(s)	440, 752
BlsI	GCNGC	2 cut(s)	441, 753
Bme1390I	CCNGG	3 cut(s)	216, 408, 605
Bme18I	GGWCC	4 cut(s)	192, 285, 330, 375
BmgT120I	GGNCC	4 cut(s)	192, 285, 330, 375
BmiI	GGNNCC	2 cut(s)	331, 692
BmrFI	CCNGG	3 cut(s)	216, 408, 605
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	806
Bpu10I	CCTNAGC	2 cut(s)	615, 720
BpuEI	CTTGAG	2 cut(s)	871, 892
BpuMI	CCSGG	2 cut(s)	216, 605
BsaJI	CCNNGG	2 cut(s)	119, 325
BsaWI	WCCGGW	1 cut(s)	909
Bsc4I	CCNNNNNNNGG	6 cut(s)	282, 294, 553, 586, 603, 604
Bse118I	RCCGGY	1 cut(s)	909
Bse1I	ACTGG	2 cut(s)	72, 368
Bse3DI	GCAATG	3 cut(s)	237, 492, 776
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	119, 325
BseLI	CCNNNNNNNGG	6 cut(s)	282, 294, 553, 586, 603, 604
BseMI	GCAATG	3 cut(s)	237, 492, 776
BseMII	CTCAG	4 cut(s)	37, 629, 734, 859
BseNI	ACTGG	2 cut(s)	72, 368
BseRI	GAGGAG	3 cut(s)	195, 234, 833
BseXI	GCAGC	2 cut(s)	426, 738
BseYI	CCCAGC	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	2 cut(s)	802, 1006
BshNI	GGYRCC	1 cut(s)	690
BshTI	ACCGGT	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	3 cut(s)	216, 604, 910
BslFI	GGGAC	2 cut(s)	343, 580
BslI	CCNNNNNNNGG	6 cut(s)	282, 294, 553, 586, 603, 604
BsmFI	GGGAC	2 cut(s)	343, 580
BsnI	GGCC	2 cut(s)	802, 1006
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	1 cut(s)	724
BspACI	CCGC	3 cut(s)	195, 288, 839
BspANI	GGCC	2 cut(s)	802, 1006
BspCNI	CTCAG	4 cut(s)	38, 628, 733, 858
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	331, 692
BspPI	GGATC	1 cut(s)	732
BspQI	GCTCTTC	2 cut(s)	204, 429
BspT107I	GGYRCC	1 cut(s)	690
BsrBI	CCGCTC	2 cut(s)	197, 841
BsrDI	GCAATG	3 cut(s)	237, 492, 776
BsrFI	RCCGGY	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	72, 368
BssAI	RCCGGY	1 cut(s)	909
BssECI	CCNNGG	2 cut(s)	119, 325
BssMI	GATC	1 cut(s)	724
BssNAI	GTATAC	1 cut(s)	365
BssT1I	CCWWGG	2 cut(s)	119, 325
Bst1107I	GTATAC	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	6 cut(s)	256, 277, 334, 340, 528, 747
Bst6I	CTCTTC	2 cut(s)	204, 429
BstAPI	GCANNNNNTGC	2 cut(s)	247, 576
BstC8I	GCNNGC	4 cut(s)	248, 631, 818, 834
BstDEI	CTNAG	5 cut(s)	46, 615, 720, 845, 1012
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	1 cut(s)	727
BstMBI	GATC	1 cut(s)	724
BstMWI	GCNNNNNNNGC	5 cut(s)	247, 576, 778, 838, 897
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	3 cut(s)	214, 406, 603
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	426, 738
BstZ17I	GTATAC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	802, 1006
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 767
Cac8I	GCNNGC	4 cut(s)	248, 631, 818, 834
CaiI	CAGNNNCTG	1 cut(s)	630
CfoI	GCGC	1 cut(s)	816
Cfr10I	RCCGGY	1 cut(s)	909
Cfr13I	GGNCC	4 cut(s)	192, 285, 330, 375
Csp6I	GTAC	1 cut(s)	53
CspAI	ACCGGT	1 cut(s)	909
CviAII	CATG	3 cut(s)	132, 247, 798
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	5 cut(s)	46, 615, 720, 845, 1012
DpnI	GATC	1 cut(s)	726
DpnII	GATC	1 cut(s)	724
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	1 cut(s)	800
Eam1104I	CTCTTC	2 cut(s)	204, 429
EarI	CTCTTC	2 cut(s)	204, 429
Ecl136II	GAGCTC	1 cut(s)	832
Eco130I	CCWWGG	2 cut(s)	119, 325
Eco147I	AGGCCT	1 cut(s)	1006
Eco24I	GRGCYC	1 cut(s)	834
Eco47I	GGWCC	4 cut(s)	192, 285, 330, 375
Eco53kI	GAGCTC	1 cut(s)	832
Eco57I	CTGAAG	4 cut(s)	89, 581, 743, 920
EcoICRI	GAGCTC	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	119, 325
EcoT38I	GRGCYC	1 cut(s)	834
ErhI	CCWWGG	2 cut(s)	119, 325
FaeI	CATG	3 cut(s)	135, 250, 801
FaqI	GGGAC	2 cut(s)	343, 580
FatI	CATG	3 cut(s)	131, 246, 797
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	440, 752
FriOI	GRGCYC	1 cut(s)	834
Fsp4HI	GCNGC	2 cut(s)	440, 752
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	2 cut(s)	440, 752
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	806
HaeIII	GGCC	2 cut(s)	802, 1006
HapII	CCGG	3 cut(s)	216, 604, 910
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	3 cut(s)	135, 250, 801
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	2 cut(s)	448, 593
HpaII	CCGG	3 cut(s)	216, 604, 910
HphI	GGTGA	2 cut(s)	924, 943
Hpy166II	GTNNAC	3 cut(s)	22, 365, 951
Hpy188I	TCNGA	5 cut(s)	108, 345, 494, 521, 626
Hpy188III	TCNNGA	3 cut(s)	37, 722, 858
Hpy8I	GTNNAC	3 cut(s)	22, 365, 951
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	155, 929, 984
HpyCH4III	ACNGT	6 cut(s)	256, 277, 334, 340, 528, 747
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	5 cut(s)	97, 241, 781, 987, 1021
HpyF10VI	GCNNNNNNNGC	5 cut(s)	247, 576, 778, 838, 897
HpyF3I	CTNAG	5 cut(s)	46, 615, 720, 845, 1012
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	135, 250, 801
HspAI	GCGC	1 cut(s)	814
Kzo9I	GATC	1 cut(s)	724
LguI	GCTCTTC	2 cut(s)	204, 429
LmnI	GCTCC	3 cut(s)	8, 825, 846
Lsp1109I	GCAGC	2 cut(s)	426, 738
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	4 cut(s)	63, 277, 334, 912
MalI	GATC	1 cut(s)	726
MbiI	CCGCTC	2 cut(s)	197, 841
MboI	GATC	1 cut(s)	724
MboII	GAAGA	5 cut(s)	95, 191, 446, 574, 926
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	8 cut(s)	163, 210, 312, 642, 653, 704, 877, 901
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	486
MseI	TTAA	8 cut(s)	263, 310, 652, 671, 794, 904, 968, 1029
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	619
MspI	CCGG	3 cut(s)	216, 604, 910
MspR9I	CCNGG	3 cut(s)	216, 408, 605
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	5 cut(s)	247, 576, 778, 838, 897
NciI	CCSGG	2 cut(s)	216, 605
NdeII	GATC	1 cut(s)	724
NlaIII	CATG	3 cut(s)	135, 250, 801
NlaIV	GGNNCC	2 cut(s)	331, 692
NmuCI	GTSAC	3 cut(s)	277, 334, 912
NspI	RCATGY	1 cut(s)	250
PaeI	GCATGC	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	1006
PciSI	GCTCTTC	2 cut(s)	204, 429
PfeI	GAWTC	1 cut(s)	448
PfoI	TCCNGGA	3 cut(s)	214, 406, 603
PinAI	ACCGGT	1 cut(s)	909
PkrI	GCNGC	2 cut(s)	441, 753
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	904
Psp124BI	GAGCTC	1 cut(s)	834
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	331, 692
PspPI	GGNCC	4 cut(s)	192, 285, 330, 375
PstNI	CAGNNNCTG	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	834
SapI	GCTCTTC	2 cut(s)	204, 429
SaqAI	TTAA	8 cut(s)	263, 310, 652, 671, 794, 904, 968, 1029
SatI	GCNGC	2 cut(s)	440, 752
Sau3AI	GATC	1 cut(s)	724
Sau96I	GGNCC	4 cut(s)	192, 285, 330, 375
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	3 cut(s)	216, 408, 605
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	4 cut(s)	192, 285, 330, 375
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	871, 886
SmoI	CTYRAG	2 cut(s)	871, 886
SphI	GCATGC	1 cut(s)	250
Sse9I	AATT	8 cut(s)	163, 210, 312, 642, 653, 704, 877, 901
SseBI	AGGCCT	1 cut(s)	1006
SsiI	CCGC	3 cut(s)	195, 288, 839
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	834
StuI	AGGCCT	1 cut(s)	1006
StyD4I	CCNGG	3 cut(s)	214, 406, 603
StyI	CCWWGG	2 cut(s)	119, 325
TaaI	ACNGT	6 cut(s)	256, 277, 334, 340, 528, 747
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	895
TasI	AATT	8 cut(s)	163, 210, 312, 642, 653, 704, 877, 901
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	8 cut(s)	263, 310, 652, 671, 794, 904, 968, 1029
Tru9I	TTAA	8 cut(s)	263, 310, 652, 671, 794, 904, 968, 1029
TscAI	CASTG	2 cut(s)	66, 767
TseFI	GTSAC	3 cut(s)	277, 334, 912
TseI	GCWGC	2 cut(s)	439, 751
Tsp45I	GTSAC	3 cut(s)	277, 334, 912
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	66, 767
VpaK11BI	GGWCC	4 cut(s)	192, 285, 330, 375
VspI	ATTAAT	1 cut(s)	904
XapI	RAATTY	2 cut(s)	163, 312
XceI	RCATGY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.