No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G36990 AT4G08510 AT4G08510 |
| fragaria_vesca | FvH4_5g38960 FvH4_5g38960 FvH4_5g38960 FvH4_5g38960 |
| malus_domestica | MD08G1173100.v1.1 MD15G1358400.v1.1 |
| prunus_persica | Prupe.1G505900_v2.0.a1 |
| pyrus_communis | pycom15g32070 pycom15g32080 |
| rosa_chinensis | RchiOBHm_Chr7g0240931 |
| rosa_laevigata | RLG00000000613 |
| rosa_multiflora | Rmu_sc0001324.1_g000003 Rmu_sc0031641.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00219410 |
| rosa_rugosa | Rorug07G0340300 |
| rosa_samantha | Rh7AG494800 Rh7BG466400 Rh7CG512900 Rh7DG479700 |
| rosa_wichuraiana | Rw7G041850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 759 |
| Acc36I | ACCTGC | 1 cut(s) | 1081 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1588 |
| AccI | GTMKAC | 2 cut(s) | 209, 475 |
| AccII | CGCG | 1 cut(s) | 12 |
| AciI | CCGC | 2 cut(s) | 1128, 1239 |
| AclI | AACGTT | 1 cut(s) | 1473 |
| AclWI | GGATC | 6 cut(s) | 202, 293, 306, 1206, 1325, 1511 |
| AcsI | RAATTY | 1 cut(s) | 76 |
| AcuI | CTGAAG | 3 cut(s) | 795, 864, 1347 |
| AfaI | GTAC | 2 cut(s) | 808, 1315 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 186, 1551, 1552, 1588 |
| AflIII | ACRYGT | 2 cut(s) | 1221, 1310 |
| AgeI | ACCGGT | 3 cut(s) | 165, 868, 953 |
| AjnI | CCWGG | 5 cut(s) | 481, 592, 793, 816, 1021 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1241, 1273 |
| Alw21I | GWGCWC | 1 cut(s) | 506 |
| Alw26I | GTCTC | 2 cut(s) | 156, 361 |
| AlwI | GGATC | 6 cut(s) | 202, 293, 306, 1206, 1325, 1511 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1642 |
| AoxI | GGCC | 1 cut(s) | 565 |
| ApeKI | GCWGC | 4 cut(s) | 1427, 1529, 1633, 1642 |
| ApoI | RAATTY | 1 cut(s) | 76 |
| AseI | ATTAAT | 1 cut(s) | 453 |
| AsiGI | ACCGGT | 3 cut(s) | 165, 868, 953 |
| AspS9I | GGNCC | 4 cut(s) | 566, 752, 835, 1190 |
| AsuHPI | GGTGA | 4 cut(s) | 560, 959, 1072, 1098 |
| AsuII | TTCGAA | 1 cut(s) | 940 |
| AsuNHI | GCTAGC | 1 cut(s) | 1130 |
| AvaII | GGWCC | 3 cut(s) | 752, 835, 1190 |
| BamHI | GGATCC | 1 cut(s) | 298 |
| BanII | GRGCYC | 2 cut(s) | 506, 896 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 790, 822 |
| BbsI | GAAGAC | 2 cut(s) | 162, 1353 |
| Bbv12I | GWGCWC | 1 cut(s) | 506 |
| BbvI | GCAGC | 4 cut(s) | 1414, 1516, 1620, 1629 |
| BccI | CCATC | 4 cut(s) | 414, 1159, 1342, 1633 |
| BciT130I | CCWGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| BcoDI | GTCTC | 2 cut(s) | 156, 361 |
| BfaI | CTAG | 7 cut(s) | 120, 198, 489, 855, 1077, 1131, 1404 |
| BfmI | CTRYAG | 2 cut(s) | 1428, 1634 |
| BfuAI | ACCTGC | 1 cut(s) | 1081 |
| BisI | GCNGC | 6 cut(s) | 1128, 1239, 1428, 1530, 1634, 1643 |
| BlsI | GCNGC | 6 cut(s) | 1129, 1240, 1429, 1531, 1635, 1644 |
| Bme1390I | CCNGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| Bme18I | GGWCC | 3 cut(s) | 752, 835, 1190 |
| BmgT120I | GGNCC | 4 cut(s) | 566, 752, 835, 1190 |
| BmiI | GGNNCC | 5 cut(s) | 300, 334, 360, 681, 792 |
| BmrFI | CCNGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| BmsI | GCATC | 3 cut(s) | 124, 987, 1362 |
| BmtI | GCTAGC | 1 cut(s) | 1134 |
| BpiI | GAAGAC | 2 cut(s) | 162, 1353 |
| BpmI | CTGGAG | 2 cut(s) | 777, 1119 |
| Bpu14I | TTCGAA | 1 cut(s) | 940 |
| BpuEI | CTTGAG | 2 cut(s) | 399, 851 |
| BsaAI | YACGTR | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 2 cut(s) | 261, 1498 |
| BsaI | GGTCTC | 1 cut(s) | 156 |
| BsaJI | CCNNGG | 5 cut(s) | 302, 816, 1193, 1257, 1546 |
| BsaWI | WCCGGW | 3 cut(s) | 165, 868, 953 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 115, 145, 1200, 1230 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 186, 1551, 1552, 1588 |
| Bse118I | RCCGGY | 3 cut(s) | 165, 868, 953 |
| Bse1I | ACTGG | 1 cut(s) | 808 |
| Bse8I | GATNNNNATC | 2 cut(s) | 261, 1498 |
| BseBI | CCWGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| BseDI | CCNNGG | 5 cut(s) | 302, 816, 1193, 1257, 1546 |
| BseGI | GGATG | 3 cut(s) | 291, 1151, 1561 |
| BseJI | GATNNNNATC | 2 cut(s) | 261, 1498 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 186, 1551, 1552, 1588 |
| BseMII | CTCAG | 5 cut(s) | 356, 626, 909, 1216, 1283 |
| BseNI | ACTGG | 1 cut(s) | 808 |
| BseRI | GAGGAG | 3 cut(s) | 202, 371, 1607 |
| BseXI | GCAGC | 4 cut(s) | 1414, 1516, 1620, 1629 |
| BsgI | GTGCAG | 1 cut(s) | 806 |
| Bsh1236I | CGCG | 1 cut(s) | 12 |
| Bsh1285I | CGRYCG | 1 cut(s) | 166 |
| BshFI | GGCC | 1 cut(s) | 567 |
| BshTI | ACCGGT | 3 cut(s) | 165, 868, 953 |
| BsiEI | CGRYCG | 1 cut(s) | 166 |
| BsiHKAI | GWGCWC | 1 cut(s) | 506 |
| BsiSI | CCGG | 3 cut(s) | 166, 869, 954 |
| BslFI | GGGAC | 1 cut(s) | 320 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 186, 1551, 1552, 1588 |
| BsmAI | GTCTC | 2 cut(s) | 156, 361 |
| BsmBI | CGTCTC | 1 cut(s) | 361 |
| BsmFI | GGGAC | 1 cut(s) | 320 |
| BsmI | GAATGC | 2 cut(s) | 121, 1532 |
| BsnI | GGCC | 1 cut(s) | 567 |
| Bso31I | GGTCTC | 1 cut(s) | 156 |
| Bsp119I | TTCGAA | 1 cut(s) | 940 |
| Bsp1286I | GDGCHC | 2 cut(s) | 506, 896 |
| Bsp143I | GATC | 8 cut(s) | 194, 262, 298, 371, 1032, 1198, 1330, 1516 |
| Bsp19I | CCATGG | 1 cut(s) | 302 |
| BspACI | CCGC | 2 cut(s) | 1128, 1239 |
| BspANI | GGCC | 1 cut(s) | 567 |
| BspCNI | CTCAG | 5 cut(s) | 357, 625, 908, 1215, 1282 |
| BspFNI | CGCG | 1 cut(s) | 12 |
| BspLI | GGNNCC | 5 cut(s) | 300, 334, 360, 681, 792 |
| BspMAI | CTGCAG | 2 cut(s) | 1432, 1638 |
| BspMI | ACCTGC | 1 cut(s) | 1081 |
| BspOI | GCTAGC | 1 cut(s) | 1134 |
| BspPI | GGATC | 6 cut(s) | 202, 293, 306, 1206, 1325, 1511 |
| BspT104I | TTCGAA | 1 cut(s) | 940 |
| BspTNI | GGTCTC | 1 cut(s) | 156 |
| BsrFI | RCCGGY | 3 cut(s) | 165, 868, 953 |
| BsrI | ACTGG | 1 cut(s) | 808 |
| BssAI | RCCGGY | 3 cut(s) | 165, 868, 953 |
| BssECI | CCNNGG | 5 cut(s) | 302, 816, 1193, 1257, 1546 |
| BssMI | GATC | 8 cut(s) | 194, 262, 298, 371, 1032, 1198, 1330, 1516 |
| BssNAI | GTATAC | 1 cut(s) | 476 |
| BssT1I | CCWWGG | 4 cut(s) | 302, 1193, 1257, 1546 |
| Bst1107I | GTATAC | 1 cut(s) | 476 |
| Bst2UI | CCWGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| Bst4CI | ACNGT | 3 cut(s) | 427, 1292, 1385 |
| Bst6I | CTCTTC | 3 cut(s) | 546, 692, 913 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1642 |
| BstBAI | YACGTR | 1 cut(s) | 98 |
| BstBI | TTCGAA | 1 cut(s) | 940 |
| BstC8I | GCNNGC | 5 cut(s) | 789, 1132, 1136, 1277, 1281 |
| BstDEI | CTNAG | 8 cut(s) | 365, 542, 612, 895, 1050, 1202, 1269, 1389 |
| BstDSI | CCRYGG | 1 cut(s) | 302 |
| BstF5I | GGATG | 3 cut(s) | 291, 1151, 1561 |
| BstFNI | CGCG | 1 cut(s) | 12 |
| BstKTI | GATC | 8 cut(s) | 197, 265, 301, 374, 1035, 1201, 1333, 1519 |
| BstMAI | GTCTC | 2 cut(s) | 156, 361 |
| BstMBI | GATC | 8 cut(s) | 194, 262, 298, 371, 1032, 1198, 1330, 1516 |
| BstMCI | CGRYCG | 1 cut(s) | 166 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 635, 856, 1235, 1630, 1639, 1642 |
| BstNI | CCWGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| BstNSI | RCATGY | 4 cut(s) | 221, 1225, 1283, 1314 |
| BstSCI | CCNGG | 5 cut(s) | 481, 592, 793, 816, 1021 |
| BstSFI | CTRYAG | 2 cut(s) | 1428, 1634 |
| BstSNI | TACGTA | 1 cut(s) | 98 |
| BstUI | CGCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 4 cut(s) | 1414, 1516, 1620, 1629 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 1353 |
| BstX2I | RGATCY | 4 cut(s) | 194, 298, 1198, 1516 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 514 |
| BstYI | RGATCY | 4 cut(s) | 194, 298, 1198, 1516 |
| BstZ17I | GTATAC | 1 cut(s) | 476 |
| BsuRI | GGCC | 1 cut(s) | 567 |
| BtgI | CCRYGG | 1 cut(s) | 302 |
| BtsCI | GGATG | 3 cut(s) | 291, 1151, 1561 |
| BtsI | GCAGTG | 2 cut(s) | 1143, 1628 |
| BtsIMutI | CAGTG | 5 cut(s) | 362, 1143, 1297, 1371, 1628 |
| BveI | ACCTGC | 1 cut(s) | 1081 |
| Cac8I | GCNNGC | 5 cut(s) | 789, 1132, 1136, 1277, 1281 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1642 |
| Cfr10I | RCCGGY | 3 cut(s) | 165, 868, 953 |
| Cfr13I | GGNCC | 4 cut(s) | 566, 752, 835, 1190 |
| Csp6I | GTAC | 2 cut(s) | 807, 1314 |
| CspAI | ACCGGT | 3 cut(s) | 165, 868, 953 |
| CviQI | GTAC | 2 cut(s) | 807, 1314 |
| DdeI | CTNAG | 8 cut(s) | 365, 542, 612, 895, 1050, 1202, 1269, 1389 |
| DpnI | GATC | 8 cut(s) | 196, 264, 300, 373, 1034, 1200, 1332, 1518 |
| DpnII | GATC | 8 cut(s) | 194, 262, 298, 371, 1032, 1198, 1330, 1516 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 759 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 759 |
| Eam1104I | CTCTTC | 3 cut(s) | 546, 692, 913 |
| EarI | CTCTTC | 3 cut(s) | 546, 692, 913 |
| Ecl136II | GAGCTC | 1 cut(s) | 504 |
| Eco105I | TACGTA | 1 cut(s) | 98 |
| Eco130I | CCWWGG | 4 cut(s) | 302, 1193, 1257, 1546 |
| Eco24I | GRGCYC | 2 cut(s) | 506, 896 |
| Eco31I | GGTCTC | 1 cut(s) | 156 |
| Eco47I | GGWCC | 3 cut(s) | 752, 835, 1190 |
| Eco53kI | GAGCTC | 1 cut(s) | 504 |
| Eco57I | CTGAAG | 3 cut(s) | 795, 864, 1347 |
| EcoICRI | GAGCTC | 1 cut(s) | 504 |
| EcoRII | CCWGG | 5 cut(s) | 481, 592, 793, 816, 1021 |
| EcoT14I | CCWWGG | 4 cut(s) | 302, 1193, 1257, 1546 |
| EcoT22I | ATGCAT | 2 cut(s) | 223, 1285 |
| EcoT38I | GRGCYC | 2 cut(s) | 506, 896 |
| ErhI | CCWWGG | 4 cut(s) | 302, 1193, 1257, 1546 |
| Esp3I | CGTCTC | 1 cut(s) | 361 |
| FaqI | GGGAC | 1 cut(s) | 320 |
| FblI | GTMKAC | 2 cut(s) | 209, 475 |
| Fnu4HI | GCNGC | 6 cut(s) | 1128, 1239, 1428, 1530, 1634, 1643 |
| FokI | GGATG | 3 cut(s) | 298, 1138, 1568 |
| FriOI | GRGCYC | 2 cut(s) | 506, 896 |
| Fsp4HI | GCNGC | 6 cut(s) | 1128, 1239, 1428, 1530, 1634, 1643 |
| FspBI | CTAG | 7 cut(s) | 120, 198, 489, 855, 1077, 1131, 1404 |
| GluI | GCNGC | 6 cut(s) | 1128, 1239, 1428, 1530, 1634, 1643 |
| GsuI | CTGGAG | 2 cut(s) | 777, 1119 |
| HaeIII | GGCC | 1 cut(s) | 567 |
| HapII | CCGG | 3 cut(s) | 166, 869, 954 |
| HinfI | GANTC | 6 cut(s) | 89, 140, 582, 713, 1063, 1499 |
| HpaII | CCGG | 3 cut(s) | 166, 869, 954 |
| HphI | GGTGA | 4 cut(s) | 560, 959, 1072, 1098 |
| Hpy166II | GTNNAC | 6 cut(s) | 210, 476, 809, 1106, 1219, 1421 |
| Hpy188I | TCNGA | 6 cut(s) | 88, 267, 615, 913, 1032, 1272 |
| Hpy188III | TCNNGA | 8 cut(s) | 29, 48, 161, 340, 750, 969, 1459, 1514 |
| Hpy8I | GTNNAC | 6 cut(s) | 210, 476, 809, 1106, 1219, 1421 |
| Hpy99I | CGWCG | 1 cut(s) | 1574 |
| HpyAV | CCTTC | 5 cut(s) | 271, 346, 647, 888, 1422 |
| HpyCH4III | ACNGT | 3 cut(s) | 427, 1292, 1385 |
| HpyCH4IV | ACGT | 3 cut(s) | 97, 573, 1473 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 635, 856, 1235, 1630, 1639, 1642 |
| HpyF3I | CTNAG | 8 cut(s) | 365, 542, 612, 895, 1050, 1202, 1269, 1389 |
| HpySE526I | ACGT | 3 cut(s) | 97, 573, 1473 |
| Kzo9I | GATC | 8 cut(s) | 194, 262, 298, 371, 1032, 1198, 1330, 1516 |
| LmnI | GCTCC | 8 cut(s) | 123, 246, 267, 358, 509, 796, 1208, 1393 |
| Lsp1109I | GCAGC | 4 cut(s) | 1414, 1516, 1620, 1629 |
| LweI | GCATC | 3 cut(s) | 124, 987, 1362 |
| MaeI | CTAG | 7 cut(s) | 120, 198, 489, 855, 1077, 1131, 1404 |
| MaeII | ACGT | 3 cut(s) | 97, 573, 1473 |
| MaeIII | GTNAC | 2 cut(s) | 764, 1406 |
| MalI | GATC | 8 cut(s) | 196, 264, 300, 373, 1034, 1200, 1332, 1518 |
| MboI | GATC | 8 cut(s) | 194, 262, 298, 371, 1032, 1198, 1330, 1516 |
| MboII | GAAGA | 8 cut(s) | 162, 165, 563, 709, 810, 900, 957, 1353 |
| MflI | RGATCY | 4 cut(s) | 194, 298, 1198, 1516 |
| MhlI | GDGCHC | 2 cut(s) | 506, 896 |
| MluCI | AATT | 3 cut(s) | 76, 733, 1160 |
| MmeI | TCCRAC | 1 cut(s) | 638 |
| Mph1103I | ATGCAT | 2 cut(s) | 223, 1285 |
| MseI | TTAA | 3 cut(s) | 240, 453, 1539 |
| MslI | CAYNNNNRTG | 1 cut(s) | 723 |
| MspA1I | CMGCKG | 1 cut(s) | 1241 |
| MspI | CCGG | 3 cut(s) | 166, 869, 954 |
| MspR9I | CCNGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| Mva1269I | GAATGC | 2 cut(s) | 121, 1532 |
| MvaI | CCWGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| MvnI | CGCG | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 635, 856, 1235, 1630, 1639, 1642 |
| NcoI | CCATGG | 1 cut(s) | 302 |
| NdeII | GATC | 8 cut(s) | 194, 262, 298, 371, 1032, 1198, 1330, 1516 |
| NheI | GCTAGC | 1 cut(s) | 1130 |
| NlaIV | GGNNCC | 5 cut(s) | 300, 334, 360, 681, 792 |
| NmeAIII | GCCGAG | 1 cut(s) | 1145 |
| NmuCI | GTSAC | 1 cut(s) | 1406 |
| NsiI | ATGCAT | 2 cut(s) | 223, 1285 |
| NspI | RCATGY | 4 cut(s) | 221, 1225, 1283, 1314 |
| NspV | TTCGAA | 1 cut(s) | 940 |
| PaeI | GCATGC | 1 cut(s) | 1283 |
| PciI | ACATGT | 2 cut(s) | 1221, 1310 |
| PctI | GAATGC | 2 cut(s) | 121, 1532 |
| PfeI | GAWTC | 6 cut(s) | 89, 140, 582, 713, 1063, 1499 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1588 |
| PfoI | TCCNGGA | 2 cut(s) | 481, 793 |
| PinAI | ACCGGT | 3 cut(s) | 165, 868, 953 |
| PkrI | GCNGC | 6 cut(s) | 1129, 1240, 1429, 1531, 1635, 1644 |
| Ppu21I | YACGTR | 1 cut(s) | 98 |
| PscI | ACATGT | 2 cut(s) | 1221, 1310 |
| PshBI | ATTAAT | 1 cut(s) | 453 |
| Psp124BI | GAGCTC | 1 cut(s) | 506 |
| Psp1406I | AACGTT | 1 cut(s) | 1473 |
| Psp6I | CCWGG | 5 cut(s) | 481, 592, 793, 816, 1021 |
| PspGI | CCWGG | 5 cut(s) | 481, 592, 793, 816, 1021 |
| PspN4I | GGNNCC | 5 cut(s) | 300, 334, 360, 681, 792 |
| PspPI | GGNCC | 4 cut(s) | 566, 752, 835, 1190 |
| PstI | CTGCAG | 2 cut(s) | 1432, 1638 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1642 |
| PsuI | RGATCY | 4 cut(s) | 194, 298, 1198, 1516 |
| RsaI | GTAC | 2 cut(s) | 808, 1315 |
| RsaNI | GTAC | 2 cut(s) | 807, 1314 |
| RseI | CAYNNNNRTG | 1 cut(s) | 723 |
| SacI | GAGCTC | 1 cut(s) | 506 |
| SaqAI | TTAA | 3 cut(s) | 240, 453, 1539 |
| SatI | GCNGC | 6 cut(s) | 1128, 1239, 1428, 1530, 1634, 1643 |
| Sau3AI | GATC | 8 cut(s) | 194, 262, 298, 371, 1032, 1198, 1330, 1516 |
| Sau96I | GGNCC | 4 cut(s) | 566, 752, 835, 1190 |
| ScrFI | CCNGG | 5 cut(s) | 483, 594, 795, 818, 1023 |
| SduI | GDGCHC | 2 cut(s) | 506, 896 |
| SfaNI | GCATC | 3 cut(s) | 124, 987, 1362 |
| SfcI | CTRYAG | 2 cut(s) | 1428, 1634 |
| SfuI | TTCGAA | 1 cut(s) | 940 |
| SinI | GGWCC | 3 cut(s) | 752, 835, 1190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 723 |
| SmlI | CTYRAG | 2 cut(s) | 414, 830 |
| SmoI | CTYRAG | 2 cut(s) | 414, 830 |
| SnaBI | TACGTA | 1 cut(s) | 98 |
| SphI | GCATGC | 1 cut(s) | 1283 |
| Sse9I | AATT | 3 cut(s) | 76, 733, 1160 |
| SsiI | CCGC | 2 cut(s) | 1128, 1239 |
| SspMI | CTAG | 7 cut(s) | 120, 198, 489, 855, 1077, 1131, 1404 |
| SstI | GAGCTC | 1 cut(s) | 506 |
| StyD4I | CCNGG | 5 cut(s) | 481, 592, 793, 816, 1021 |
| StyI | CCWWGG | 4 cut(s) | 302, 1193, 1257, 1546 |
| TaaI | ACNGT | 3 cut(s) | 427, 1292, 1385 |
| TaiI | ACGT | 3 cut(s) | 100, 576, 1476 |
| TaqI | TCGA | 4 cut(s) | 162, 598, 940, 1458 |
| TaqII | GACCGA | 1 cut(s) | 852 |
| TasI | AATT | 3 cut(s) | 76, 733, 1160 |
| TauI | GCSGC | 2 cut(s) | 1130, 1241 |
| TfiI | GAWTC | 6 cut(s) | 89, 140, 582, 713, 1063, 1499 |
| Tru1I | TTAA | 3 cut(s) | 240, 453, 1539 |
| Tru9I | TTAA | 3 cut(s) | 240, 453, 1539 |
| TscAI | CASTG | 5 cut(s) | 369, 1150, 1297, 1371, 1635 |
| TseFI | GTSAC | 1 cut(s) | 1406 |
| TseI | GCWGC | 4 cut(s) | 1427, 1529, 1633, 1642 |
| Tsp45I | GTSAC | 1 cut(s) | 1406 |
| TspDTI | ATGAA | 2 cut(s) | 890, 1455 |
| TspGWI | ACGGA | 2 cut(s) | 480, 1499 |
| TspRI | CASTG | 5 cut(s) | 369, 1150, 1297, 1371, 1635 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1588 |
| VpaK11BI | GGWCC | 3 cut(s) | 752, 835, 1190 |
| VspI | ATTAAT | 1 cut(s) | 453 |
| XapI | RAATTY | 1 cut(s) | 76 |
| XceI | RCATGY | 4 cut(s) | 221, 1225, 1283, 1314 |
| XmiI | GTMKAC | 2 cut(s) | 209, 475 |
| XspI | CTAG | 7 cut(s) | 120, 198, 489, 855, 1077, 1131, 1404 |
| Zsp2I | ATGCAT | 2 cut(s) | 223, 1285 |