AT1G43980

Pentatricopeptide repeat-containing protein At1g43980, mitochondrial

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
16687430 .. 16689563
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43980.1

Sequence Viewer

Length: 1902 bp
ATGTTCCAACTGCTCCGACGAGCTCATGGACTTTGCATGCCGTCCTCTCTCTACTTCTCGCGTCTCGTAAACCGCTCTTTACTCTCAAAGTCTCCAACTTTAGCCAAAATCGTCCATGCCCAGCTCCTGGAAGCTGGATTCGTACGCACTACTTATTGGGGAAATCGCTGCCTTCAGCTCTACTTCAAATCCGGATCCGTCATCAATGCCCTCCAACTGTTCGACGATATTCCTGATAAGAACACCATAACCTGGAACGTTTGCTTAAAGGGTTTGTTTAAAAATGGTTATCTCAATAACGCACTTGACCTGTTCGACGAAATGCCTGAACGAGATGTTGTTAGCTGGAATACAATGATTTCAGGGTTGGTTTCTTGTGGGTTTCATGAATATGGGATTAGGGTTTTCTTCGATATGCAGAGATGGGAGATTAGACCAACGGAGTTTACTTTTTCGATTCTAGCTTCTCTTGTTACTTGTGTTCGACATGGGGAACAGATTCATGGTAATGCTATTTGTAGTGGTGTGAGTAGGTATAATTTGGTTGTGTGGAACTCTGTTATGGATATGTATAGAAGATTAGGAGTTTTTGATTACGCGTTATCGGTGTTTTTAACTATGGAGGATAGAGATGTTGTCTCGTGGAACTGTTTGATTTTGTCTTGTTCCGATTCTGGTAATAAGGAAGTGGCTTTGGATCAGTTTTGGTTGATGAGAGAAATGGAGATTCAACCTGATGAATATACAGTTTCGATGGTTGTGTCTATTTGCTCTGATTTACGAGAACTGAGTAAGGGTAAGCAGGCTCTTGCTCTTTGTATCAAGATGGGGTTTTTATCTAACAGTATTGTTTTAGGAGCTGGGATTGATATGTTTTCCAAATGTAACAGATTGGATGATTCGGTTAAACTTTTTAGAGAGTTGGAGAAATGGGATTCAGTGTTGTGCAATTCCATGATCGGTAGCTATTCGTGGCATTGTTGTGGAGAAGATGCTCTTCGGCTCTTTATCCTTGCCATGACGCAGAGTGTTAGGCCTGATAAGTTCACGTTCAGTAGCGTTCTGAGCTCAATGAATGCTGTGATGCTAGATCACGGAGCAGACGTTCATTCTTTGGTTATTAAGTTAGGGTTTGATTTGGATACGGCAGTAGCTACCTCACTCATGGAGATGTACTTCAAAACCGGTTCAGTTGATTTAGCAATGGGAGTGTTTGCCAAAACAGATGGAAAAGATTTGATCTTTTGGAACACAGTGATAATGGGCTTGGCGAGAAACAGTAGAGCAGTTGAGTCCCTTGCCATTTTCAATCAATTGCTGATGAACCAAAGTCTGAAACCCGATAGAGTGACGTTAATGGGTATCTTAGTAGCTTGTTGTTATGCTGGCTTTGTTAATGAAGGAATTCAGATATTCTCTTCAATGGAAAAGGCTCATGGAGTTAATCCCGGGAACGAGCATTACGCCTGTATAATCGAATTGCTTTGCAGAGTCGGTATGATCAATGAAGCAAAGGACATTGCTGACAAGATACCTTTTGAACCAAGCTCTCATATCTGGGAACCGATTCTCTGTGCATCTCTTGATCTTGGAGACACAAGACTCGCTGAGACTGTAGCGAAAACTATGTTAGAATCTGAACCAAAGTCATCTTTTCCTTACCTGGTTCTGATTAAGATATACGAGATGACATGGCGCTGGGAAAATTCAGTGAAGTTAAGATACGCCATGAATGAACATAAGTTGAAATCGGCTCAAGGATCGAGCAAGATCAGTATAGAGAGCAGTGTGTTCAGCTTCGAGGCTGACCAGTTGCAAATTCATGGAGGTCATGATACTTGCGCACTCTTGGACTTATTGTCTTGGGATTCTTTTGATCAGAAAATTCATTGGTCTGCATAA

Protein Analysis

633

Amino Acids

71.46

Weight (kDa)

5.65

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 80 - 112 5.2e-07 PPR repeat family
PPR PF01535 83 - 112 3.8e-06 PPR repeat
PPR_2 PF13041 111 - 154 5.1e-10 PPR repeat family
PPR_2 PF13041 210 - 256 3e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1843
AccB7I CCANNNNNTGG 2 cut(s) 127, 252
AccBSI CCGCTC 1 cut(s) 75
AccII CGCG 2 cut(s) 61, 599
AccIII TCCGGA 1 cut(s) 191
AciI CCGC 1 cut(s) 73
AclI AACGTT 1 cut(s) 258
AclWI GGATC 4 cut(s) 189, 202, 705, 1768
AcsI RAATTY 4 cut(s) 1404, 1705, 1818, 1884
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 144, 1175
AfiI CCNNNNNNNGG 2 cut(s) 127, 252
AflIII ACRYGT 1 cut(s) 597
AgeI ACCGGT 1 cut(s) 1184
AgsI TTSAA 7 cut(s) 187, 731, 1180, 1309, 1422, 1541, 1747
AhdI GACNNNNNGTC 1 cut(s) 1858
AjnI CCWGG 3 cut(s) 126, 251, 1662
AloI GAACNNNNNNTCC 2 cut(s) 1089, 1121
Alw21I GWGCWC 2 cut(s) 25, 1070
Alw26I GTCTC 5 cut(s) 68, 96, 643, 1587, 1604
AlwI GGATC 4 cut(s) 189, 202, 705, 1768
AlwNI CAGNNNCTG 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 1448
Aor13HI TCCGGA 1 cut(s) 191
AoxI GGCC 1 cut(s) 1034
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 4 cut(s) 1404, 1705, 1818, 1884
AsiGI ACCGGT 1 cut(s) 1184
Asp700I GAANNNNTTC 3 cut(s) 498, 1404, 1566
AspLEI GCGC 2 cut(s) 1698, 1844
AsuC2I CCSGG 2 cut(s) 1449, 1450
AvaI CYCGRG 1 cut(s) 1448
BaeI ACNNNNGTAYC 2 cut(s) 1134, 1167
BamHI GGATCC 1 cut(s) 194
BanII GRGCYC 2 cut(s) 25, 1070
BarI GAAGNNNNNNTAC 2 cut(s) 1706, 1738
BauI CACGAG 1 cut(s) 640
Bbv12I GWGCWC 2 cut(s) 25, 1070
BbvI GCAGC 1 cut(s) 155
BccI CCATC 4 cut(s) 417, 748, 820, 1220
BceAI ACGGC 2 cut(s) 25, 1161
BciT130I CCWGG 3 cut(s) 128, 253, 1664
BciVI GTATCC 1 cut(s) 1135
BclI TGATCA 2 cut(s) 1500, 1876
BcnI CCSGG 2 cut(s) 1449, 1450
BcoDI GTCTC 5 cut(s) 68, 96, 643, 1587, 1604
BfaI CTAG 2 cut(s) 461, 1088
BfmI CTRYAG 1 cut(s) 1614
BfoI RGCGCY 1 cut(s) 1699
BfuI GTATCC 1 cut(s) 1135
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 5 cut(s) 128, 253, 1449, 1450, 1664
BmeRI GACNNNNNGTC 1 cut(s) 1858
BmeT110I CYCGRG 1 cut(s) 1448
BmiI GGNNCC 2 cut(s) 196, 1563
BmrFI CCNGG 5 cut(s) 128, 253, 1449, 1450, 1664
BmsI GCATC 3 cut(s) 982, 1074, 1586
BpuEI CTTGAG 1 cut(s) 1740
BpuMI CCSGG 2 cut(s) 1449, 1450
BsaJI CCNNGG 1 cut(s) 1448
BsaWI WCCGGW 2 cut(s) 191, 1184
BsaXI ACNNNNNCTCC 2 cut(s) 1089, 1119
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 252
Bse118I RCCGGY 1 cut(s) 1184
Bse1I ACTGG 1 cut(s) 1810
Bse3DI GCAATG 2 cut(s) 1209, 1518
BseAI TCCGGA 1 cut(s) 191
BseBI CCWGG 3 cut(s) 128, 253, 1664
BseDI CCNNGG 1 cut(s) 1448
BseGI GGATG 1 cut(s) 901
BseLI CCNNNNNNNGG 2 cut(s) 127, 252
BseMI GCAATG 2 cut(s) 1209, 1518
BseMII CTCAG 3 cut(s) 779, 1055, 1599
BseNI ACTGG 1 cut(s) 1810
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 3 cut(s) 120, 860, 1698
Bsh1236I CGCG 2 cut(s) 61, 599
BshFI GGCC 1 cut(s) 1036
BshTI ACCGGT 1 cut(s) 1184
BsiHKAI GWGCWC 2 cut(s) 25, 1070
BsiHKCI CYCGRG 1 cut(s) 1448
BsiSI CCGG 3 cut(s) 192, 1185, 1449
BsiWI CGTACG 1 cut(s) 142
BslFI GGGAC 1 cut(s) 1279
BslI CCNNNNNNNGG 2 cut(s) 127, 252
BsmAI GTCTC 5 cut(s) 68, 96, 643, 1587, 1604
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 1279
BsmI GAATGC 1 cut(s) 1081
BsnI GGCC 1 cut(s) 1036
BsoBI CYCGRG 1 cut(s) 1448
Bsp1286I GDGCHC 2 cut(s) 25, 1070
Bsp13I TCCGGA 1 cut(s) 191
BspACI CCGC 1 cut(s) 73
BspANI GGCC 1 cut(s) 1036
BspCNI CTCAG 3 cut(s) 780, 1056, 1600
BspEI TCCGGA 1 cut(s) 191
BspFNI CGCG 2 cut(s) 61, 599
BspHI TCATGA 2 cut(s) 385, 1831
BspLI GGNNCC 2 cut(s) 196, 1563
BspPI GGATC 4 cut(s) 189, 202, 705, 1768
BspQI GCTCTTC 1 cut(s) 1002
BsrBI CCGCTC 1 cut(s) 75
BsrDI GCAATG 2 cut(s) 1209, 1518
BsrFI RCCGGY 1 cut(s) 1184
BsrI ACTGG 1 cut(s) 1810
BssAI RCCGGY 1 cut(s) 1184
BssECI CCNNGG 1 cut(s) 1448
BssSI CACGAG 1 cut(s) 640
Bst2BI CACGAG 1 cut(s) 640
Bst2UI CCWGG 3 cut(s) 128, 253, 1664
Bst4CI ACNGT 7 cut(s) 219, 650, 748, 845, 1255, 1280, 1615
Bst6I CTCTTC 2 cut(s) 1002, 1423
BstC8I GCNNGC 3 cut(s) 38, 804, 1387
BstDEI CTNAG 4 cut(s) 788, 1064, 1366, 1608
BstF5I GGATG 1 cut(s) 901
BstFNI CGCG 2 cut(s) 61, 599
BstH2I RGCGCY 1 cut(s) 1699
BstHHI GCGC 2 cut(s) 1698, 1844
BstMAI GTCTC 5 cut(s) 68, 96, 643, 1587, 1604
BstMWI GCNNNNNNNGC 1 cut(s) 1065
BstNI CCWGG 3 cut(s) 128, 253, 1664
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 5 cut(s) 126, 251, 1447, 1448, 1662
BstSFI CTRYAG 1 cut(s) 1614
BstUI CGCG 2 cut(s) 61, 599
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuI GTATCC 1 cut(s) 1135
BsuRI GGCC 1 cut(s) 1036
BtsCI GGATG 1 cut(s) 901
BtsI GCAGTG 1 cut(s) 1792
BtsIMutI CAGTG 4 cut(s) 945, 1260, 1716, 1792
Cac8I GCNNGC 3 cut(s) 38, 804, 1387
CaiI CAGNNNCTG 1 cut(s) 127
CciI TCATGA 2 cut(s) 385, 1831
CfoI GCGC 2 cut(s) 1698, 1844
Cfr10I RCCGGY 1 cut(s) 1184
Cfr9I CCCGGG 1 cut(s) 1448
CseI GACGC 2 cut(s) 50, 1030
CsiI ACCWGGT 1 cut(s) 1662
Csp6I GTAC 2 cut(s) 143, 1174
CspAI ACCGGT 1 cut(s) 1184
CviQI GTAC 2 cut(s) 143, 1174
DdeI CTNAG 4 cut(s) 788, 1064, 1366, 1608
DraI TTTAAA 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 1858
Eam1104I CTCTTC 2 cut(s) 1002, 1423
Eam1105I GACNNNNNGTC 1 cut(s) 1858
EarI CTCTTC 2 cut(s) 1002, 1423
Ecl136II GAGCTC 2 cut(s) 23, 1068
Eco147I AGGCCT 1 cut(s) 1036
Eco24I GRGCYC 2 cut(s) 25, 1070
Eco53kI GAGCTC 2 cut(s) 23, 1068
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 1448
EcoICRI GAGCTC 2 cut(s) 23, 1068
EcoRI GAATTC 1 cut(s) 1404
EcoRII CCWGG 3 cut(s) 126, 251, 1662
EcoT38I GRGCYC 2 cut(s) 25, 1070
Esp3I CGTCTC 1 cut(s) 68
FalI AAGNNNNNCTT 2 cut(s) 981, 1013
FaqI GGGAC 1 cut(s) 1279
FbaI TGATCA 2 cut(s) 1500, 1876
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 908
FriOI GRGCYC 2 cut(s) 25, 1070
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 2 cut(s) 461, 1088
FspI TGCGCA 1 cut(s) 1843
GlaI GCGC 2 cut(s) 1697, 1843
GluI GCNGC 1 cut(s) 169
GsaI CCCAGC 3 cut(s) 124, 864, 1702
HaeII RGCGCY 1 cut(s) 1699
HaeIII GGCC 1 cut(s) 1036
HapII CCGG 3 cut(s) 192, 1185, 1449
HgaI GACGC 2 cut(s) 50, 1030
HhaI GCGC 2 cut(s) 1698, 1844
Hin6I GCGC 2 cut(s) 1696, 1842
HinP1I GCGC 2 cut(s) 1696, 1842
HpaII CCGG 3 cut(s) 192, 1185, 1449
Hpy166II GTNNAC 3 cut(s) 70, 447, 1047
Hpy188I TCNGA 9 cut(s) 17, 670, 775, 1065, 1335, 1410, 1639, 1671, 1881
Hpy188III TCNNGA 6 cut(s) 192, 233, 386, 823, 1583, 1832
Hpy8I GTNNAC 3 cut(s) 70, 447, 1047
Hpy99I CGWCG 3 cut(s) 21, 227, 320
HpyAV CCTTC 2 cut(s) 182, 1394
HpyCH4III ACNGT 7 cut(s) 219, 650, 748, 845, 1255, 1280, 1615
HpyCH4IV ACGT 4 cut(s) 258, 1049, 1104, 1352
HpyCH4V TGCA 7 cut(s) 36, 418, 948, 1488, 1577, 1816, 1898
HpyF10VI GCNNNNNNNGC 1 cut(s) 1065
HpyF3I CTNAG 4 cut(s) 788, 1064, 1366, 1608
HpySE526I ACGT 4 cut(s) 258, 1049, 1104, 1352
HspAI GCGC 2 cut(s) 1696, 1842
Kpn2I TCCGGA 1 cut(s) 191
Ksp22I TGATCA 2 cut(s) 1500, 1876
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 4 cut(s) 18, 129, 857, 1097
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 3 cut(s) 982, 1074, 1586
MabI ACCWGGT 1 cut(s) 1662
MaeI CTAG 2 cut(s) 461, 1088
MaeII ACGT 4 cut(s) 258, 1049, 1104, 1352
MaeIII GTNAC 3 cut(s) 472, 884, 1348
MbiI CCGCTC 1 cut(s) 75
MboII GAAGA 5 cut(s) 400, 588, 989, 1001, 1410
MfeI CAATTG 1 cut(s) 1313
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 2 cut(s) 25, 1070
MluCI AATT 8 cut(s) 538, 949, 1313, 1404, 1478, 1705, 1818, 1884
MluI ACGCGT 1 cut(s) 597
MlyI GAGTC 3 cut(s) 1301, 1500, 1596
MmeI TCCRAC 5 cut(s) 31, 40, 119, 238, 903
MnlI CCTC 6 cut(s) 55, 221, 616, 1168, 1795, 1820
MroI TCCGGA 1 cut(s) 191
MroXI GAANNNNTTC 3 cut(s) 498, 1404, 1566
MslI CAYNNNNRTG 4 cut(s) 390, 507, 981, 1169
MspI CCGG 3 cut(s) 192, 1185, 1449
MspR9I CCNGG 5 cut(s) 128, 253, 1449, 1450, 1664
MunI CAATTG 1 cut(s) 1313
Mva1269I GAATGC 1 cut(s) 1081
MvaI CCWGG 3 cut(s) 128, 253, 1664
MvnI CGCG 2 cut(s) 61, 599
MwoI GCNNNNNNNGC 1 cut(s) 1065
NciI CCSGG 2 cut(s) 1449, 1450
NlaIV GGNNCC 2 cut(s) 196, 1563
NmuCI GTSAC 1 cut(s) 1348
NsbI TGCGCA 1 cut(s) 1843
NspI RCATGY 1 cut(s) 40
PaeI GCATGC 1 cut(s) 40
PagI TCATGA 2 cut(s) 385, 1831
PceI AGGCCT 1 cut(s) 1036
PciSI GCTCTTC 1 cut(s) 1002
PcsI WCGNNNNNNNCGW 1 cut(s) 1101
PctI GAATGC 1 cut(s) 1081
PdmI GAANNNNTTC 3 cut(s) 498, 1404, 1566
Pfl23II CGTACG 1 cut(s) 142
PflMI CCANNNNNTGG 2 cut(s) 127, 252
PfoI TCCNGGA 1 cut(s) 126
PinAI ACCGGT 1 cut(s) 1184
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 3 cut(s) 1300, 1499, 1596
PpsI GAGTC 3 cut(s) 1300, 1499, 1596
Psp124BI GAGCTC 2 cut(s) 25, 1070
Psp1406I AACGTT 1 cut(s) 258
Psp6I CCWGG 3 cut(s) 126, 251, 1662
PspFI CCCAGC 3 cut(s) 120, 860, 1698
PspGI CCWGG 3 cut(s) 126, 251, 1662
PspLI CGTACG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 196, 1563
PsrI GAACNNNNNNTAC 2 cut(s) 1445, 1477
PstNI CAGNNNCTG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 2 cut(s) 144, 1175
RsaNI GTAC 2 cut(s) 143, 1174
RseI CAYNNNNRTG 4 cut(s) 390, 507, 981, 1169
SacI GAGCTC 2 cut(s) 25, 1070
SapI GCTCTTC 1 cut(s) 1002
SatI GCNGC 1 cut(s) 169
SchI GAGTC 3 cut(s) 1301, 1500, 1596
ScrFI CCNGG 5 cut(s) 128, 253, 1449, 1450, 1664
SduI GDGCHC 2 cut(s) 25, 1070
SexAI ACCWGGT 1 cut(s) 1662
SfaNI GCATC 3 cut(s) 982, 1074, 1586
SfcI CTRYAG 1 cut(s) 1614
SmaI CCCGGG 1 cut(s) 1450
SmiMI CAYNNNNRTG 4 cut(s) 390, 507, 981, 1169
SmlI CTYRAG 1 cut(s) 1755
SmoI CTYRAG 1 cut(s) 1755
SphI GCATGC 1 cut(s) 40
Sse9I AATT 8 cut(s) 538, 949, 1313, 1404, 1478, 1705, 1818, 1884
SseBI AGGCCT 1 cut(s) 1036
SsiI CCGC 1 cut(s) 73
SspMI CTAG 2 cut(s) 461, 1088
SstI GAGCTC 2 cut(s) 25, 1070
StuI AGGCCT 1 cut(s) 1036
StyD4I CCNGG 5 cut(s) 126, 251, 1447, 1448, 1662
TaaI ACNGT 7 cut(s) 219, 650, 748, 845, 1255, 1280, 1615
TaiI ACGT 4 cut(s) 261, 1052, 1107, 1355
TaqI TCGA 9 cut(s) 222, 315, 411, 455, 484, 752, 1476, 1763, 1800
TasI AATT 8 cut(s) 538, 949, 1313, 1404, 1478, 1705, 1818, 1884
TatI WGTACW 1 cut(s) 1173
TscAI CASTG 4 cut(s) 945, 1260, 1716, 1792
TseFI GTSAC 1 cut(s) 1348
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 1348
TspGWI ACGGA 3 cut(s) 187, 455, 1110
TspMI CCCGGG 1 cut(s) 1448
TspRI CASTG 4 cut(s) 945, 1260, 1716, 1792
Van91I CCANNNNNTGG 2 cut(s) 127, 252
XapI RAATTY 4 cut(s) 1404, 1705, 1818, 1884
XceI RCATGY 1 cut(s) 40
XmaI CCCGGG 1 cut(s) 1448
XmnI GAANNNNTTC 3 cut(s) 498, 1404, 1566
XspI CTAG 2 cut(s) 461, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.