Pentatricopeptide repeat-containing protein At1g43980, mitochondrial
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G43980 |
| fragaria_vesca | FvH4_2g15270 FvH4_2g15270 |
| malus_domestica | MD10G1008600.v1.1 |
| prunus_persica | Prupe.8G012400_v2.0.a1 Prupe.8G012400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0277991 RchiOBHm_Chr6g0278001 |
| rosa_laevigata | RLG00000013249 |
| rosa_multiflora | Rmu_co8471873.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00190600 |
| rosa_rugosa | Rorug06G0113900 Rorug06G0114000 |
| rosa_samantha | Rh2CG626400 Rh6AG223600 Rh6AG223700 Rh6BG227800 Rh6CG230300 Rh6DG221100 |
| rosa_wichuraiana | Rw6G019540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1843 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 127, 252 |
| AccBSI | CCGCTC | 1 cut(s) | 75 |
| AccII | CGCG | 2 cut(s) | 61, 599 |
| AccIII | TCCGGA | 1 cut(s) | 191 |
| AciI | CCGC | 1 cut(s) | 73 |
| AclI | AACGTT | 1 cut(s) | 258 |
| AclWI | GGATC | 4 cut(s) | 189, 202, 705, 1768 |
| AcsI | RAATTY | 4 cut(s) | 1404, 1705, 1818, 1884 |
| AcuI | CTGAAG | 1 cut(s) | 158 |
| AfaI | GTAC | 2 cut(s) | 144, 1175 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 252 |
| AflIII | ACRYGT | 1 cut(s) | 597 |
| AgeI | ACCGGT | 1 cut(s) | 1184 |
| AgsI | TTSAA | 7 cut(s) | 187, 731, 1180, 1309, 1422, 1541, 1747 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1858 |
| AjnI | CCWGG | 3 cut(s) | 126, 251, 1662 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1089, 1121 |
| Alw21I | GWGCWC | 2 cut(s) | 25, 1070 |
| Alw26I | GTCTC | 5 cut(s) | 68, 96, 643, 1587, 1604 |
| AlwI | GGATC | 4 cut(s) | 189, 202, 705, 1768 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 127 |
| Ama87I | CYCGRG | 1 cut(s) | 1448 |
| Aor13HI | TCCGGA | 1 cut(s) | 191 |
| AoxI | GGCC | 1 cut(s) | 1034 |
| ApeKI | GCWGC | 1 cut(s) | 168 |
| ApoI | RAATTY | 4 cut(s) | 1404, 1705, 1818, 1884 |
| AsiGI | ACCGGT | 1 cut(s) | 1184 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 498, 1404, 1566 |
| AspLEI | GCGC | 2 cut(s) | 1698, 1844 |
| AsuC2I | CCSGG | 2 cut(s) | 1449, 1450 |
| AvaI | CYCGRG | 1 cut(s) | 1448 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1134, 1167 |
| BamHI | GGATCC | 1 cut(s) | 194 |
| BanII | GRGCYC | 2 cut(s) | 25, 1070 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1706, 1738 |
| BauI | CACGAG | 1 cut(s) | 640 |
| Bbv12I | GWGCWC | 2 cut(s) | 25, 1070 |
| BbvI | GCAGC | 1 cut(s) | 155 |
| BccI | CCATC | 4 cut(s) | 417, 748, 820, 1220 |
| BceAI | ACGGC | 2 cut(s) | 25, 1161 |
| BciT130I | CCWGG | 3 cut(s) | 128, 253, 1664 |
| BciVI | GTATCC | 1 cut(s) | 1135 |
| BclI | TGATCA | 2 cut(s) | 1500, 1876 |
| BcnI | CCSGG | 2 cut(s) | 1449, 1450 |
| BcoDI | GTCTC | 5 cut(s) | 68, 96, 643, 1587, 1604 |
| BfaI | CTAG | 2 cut(s) | 461, 1088 |
| BfmI | CTRYAG | 1 cut(s) | 1614 |
| BfoI | RGCGCY | 1 cut(s) | 1699 |
| BfuI | GTATCC | 1 cut(s) | 1135 |
| BisI | GCNGC | 1 cut(s) | 169 |
| BlsI | GCNGC | 1 cut(s) | 170 |
| Bme1390I | CCNGG | 5 cut(s) | 128, 253, 1449, 1450, 1664 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1858 |
| BmeT110I | CYCGRG | 1 cut(s) | 1448 |
| BmiI | GGNNCC | 2 cut(s) | 196, 1563 |
| BmrFI | CCNGG | 5 cut(s) | 128, 253, 1449, 1450, 1664 |
| BmsI | GCATC | 3 cut(s) | 982, 1074, 1586 |
| BpuEI | CTTGAG | 1 cut(s) | 1740 |
| BpuMI | CCSGG | 2 cut(s) | 1449, 1450 |
| BsaJI | CCNNGG | 1 cut(s) | 1448 |
| BsaWI | WCCGGW | 2 cut(s) | 191, 1184 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1089, 1119 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 252 |
| Bse118I | RCCGGY | 1 cut(s) | 1184 |
| Bse1I | ACTGG | 1 cut(s) | 1810 |
| Bse3DI | GCAATG | 2 cut(s) | 1209, 1518 |
| BseAI | TCCGGA | 1 cut(s) | 191 |
| BseBI | CCWGG | 3 cut(s) | 128, 253, 1664 |
| BseDI | CCNNGG | 1 cut(s) | 1448 |
| BseGI | GGATG | 1 cut(s) | 901 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 252 |
| BseMI | GCAATG | 2 cut(s) | 1209, 1518 |
| BseMII | CTCAG | 3 cut(s) | 779, 1055, 1599 |
| BseNI | ACTGG | 1 cut(s) | 1810 |
| BseXI | GCAGC | 1 cut(s) | 155 |
| BseYI | CCCAGC | 3 cut(s) | 120, 860, 1698 |
| Bsh1236I | CGCG | 2 cut(s) | 61, 599 |
| BshFI | GGCC | 1 cut(s) | 1036 |
| BshTI | ACCGGT | 1 cut(s) | 1184 |
| BsiHKAI | GWGCWC | 2 cut(s) | 25, 1070 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1448 |
| BsiSI | CCGG | 3 cut(s) | 192, 1185, 1449 |
| BsiWI | CGTACG | 1 cut(s) | 142 |
| BslFI | GGGAC | 1 cut(s) | 1279 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 252 |
| BsmAI | GTCTC | 5 cut(s) | 68, 96, 643, 1587, 1604 |
| BsmBI | CGTCTC | 1 cut(s) | 68 |
| BsmFI | GGGAC | 1 cut(s) | 1279 |
| BsmI | GAATGC | 1 cut(s) | 1081 |
| BsnI | GGCC | 1 cut(s) | 1036 |
| BsoBI | CYCGRG | 1 cut(s) | 1448 |
| Bsp1286I | GDGCHC | 2 cut(s) | 25, 1070 |
| Bsp13I | TCCGGA | 1 cut(s) | 191 |
| BspACI | CCGC | 1 cut(s) | 73 |
| BspANI | GGCC | 1 cut(s) | 1036 |
| BspCNI | CTCAG | 3 cut(s) | 780, 1056, 1600 |
| BspEI | TCCGGA | 1 cut(s) | 191 |
| BspFNI | CGCG | 2 cut(s) | 61, 599 |
| BspHI | TCATGA | 2 cut(s) | 385, 1831 |
| BspLI | GGNNCC | 2 cut(s) | 196, 1563 |
| BspPI | GGATC | 4 cut(s) | 189, 202, 705, 1768 |
| BspQI | GCTCTTC | 1 cut(s) | 1002 |
| BsrBI | CCGCTC | 1 cut(s) | 75 |
| BsrDI | GCAATG | 2 cut(s) | 1209, 1518 |
| BsrFI | RCCGGY | 1 cut(s) | 1184 |
| BsrI | ACTGG | 1 cut(s) | 1810 |
| BssAI | RCCGGY | 1 cut(s) | 1184 |
| BssECI | CCNNGG | 1 cut(s) | 1448 |
| BssSI | CACGAG | 1 cut(s) | 640 |
| Bst2BI | CACGAG | 1 cut(s) | 640 |
| Bst2UI | CCWGG | 3 cut(s) | 128, 253, 1664 |
| Bst4CI | ACNGT | 7 cut(s) | 219, 650, 748, 845, 1255, 1280, 1615 |
| Bst6I | CTCTTC | 2 cut(s) | 1002, 1423 |
| BstC8I | GCNNGC | 3 cut(s) | 38, 804, 1387 |
| BstDEI | CTNAG | 4 cut(s) | 788, 1064, 1366, 1608 |
| BstF5I | GGATG | 1 cut(s) | 901 |
| BstFNI | CGCG | 2 cut(s) | 61, 599 |
| BstH2I | RGCGCY | 1 cut(s) | 1699 |
| BstHHI | GCGC | 2 cut(s) | 1698, 1844 |
| BstMAI | GTCTC | 5 cut(s) | 68, 96, 643, 1587, 1604 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1065 |
| BstNI | CCWGG | 3 cut(s) | 128, 253, 1664 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstSCI | CCNGG | 5 cut(s) | 126, 251, 1447, 1448, 1662 |
| BstSFI | CTRYAG | 1 cut(s) | 1614 |
| BstUI | CGCG | 2 cut(s) | 61, 599 |
| BstV1I | GCAGC | 1 cut(s) | 155 |
| BstX2I | RGATCY | 1 cut(s) | 194 |
| BstYI | RGATCY | 1 cut(s) | 194 |
| BsuI | GTATCC | 1 cut(s) | 1135 |
| BsuRI | GGCC | 1 cut(s) | 1036 |
| BtsCI | GGATG | 1 cut(s) | 901 |
| BtsI | GCAGTG | 1 cut(s) | 1792 |
| BtsIMutI | CAGTG | 4 cut(s) | 945, 1260, 1716, 1792 |
| Cac8I | GCNNGC | 3 cut(s) | 38, 804, 1387 |
| CaiI | CAGNNNCTG | 1 cut(s) | 127 |
| CciI | TCATGA | 2 cut(s) | 385, 1831 |
| CfoI | GCGC | 2 cut(s) | 1698, 1844 |
| Cfr10I | RCCGGY | 1 cut(s) | 1184 |
| Cfr9I | CCCGGG | 1 cut(s) | 1448 |
| CseI | GACGC | 2 cut(s) | 50, 1030 |
| CsiI | ACCWGGT | 1 cut(s) | 1662 |
| Csp6I | GTAC | 2 cut(s) | 143, 1174 |
| CspAI | ACCGGT | 1 cut(s) | 1184 |
| CviQI | GTAC | 2 cut(s) | 143, 1174 |
| DdeI | CTNAG | 4 cut(s) | 788, 1064, 1366, 1608 |
| DraI | TTTAAA | 1 cut(s) | 280 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1858 |
| Eam1104I | CTCTTC | 2 cut(s) | 1002, 1423 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1858 |
| EarI | CTCTTC | 2 cut(s) | 1002, 1423 |
| Ecl136II | GAGCTC | 2 cut(s) | 23, 1068 |
| Eco147I | AGGCCT | 1 cut(s) | 1036 |
| Eco24I | GRGCYC | 2 cut(s) | 25, 1070 |
| Eco53kI | GAGCTC | 2 cut(s) | 23, 1068 |
| Eco57I | CTGAAG | 1 cut(s) | 158 |
| Eco88I | CYCGRG | 1 cut(s) | 1448 |
| EcoICRI | GAGCTC | 2 cut(s) | 23, 1068 |
| EcoRI | GAATTC | 1 cut(s) | 1404 |
| EcoRII | CCWGG | 3 cut(s) | 126, 251, 1662 |
| EcoT38I | GRGCYC | 2 cut(s) | 25, 1070 |
| Esp3I | CGTCTC | 1 cut(s) | 68 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 981, 1013 |
| FaqI | GGGAC | 1 cut(s) | 1279 |
| FbaI | TGATCA | 2 cut(s) | 1500, 1876 |
| Fnu4HI | GCNGC | 1 cut(s) | 169 |
| FokI | GGATG | 1 cut(s) | 908 |
| FriOI | GRGCYC | 2 cut(s) | 25, 1070 |
| Fsp4HI | GCNGC | 1 cut(s) | 169 |
| FspBI | CTAG | 2 cut(s) | 461, 1088 |
| FspI | TGCGCA | 1 cut(s) | 1843 |
| GlaI | GCGC | 2 cut(s) | 1697, 1843 |
| GluI | GCNGC | 1 cut(s) | 169 |
| GsaI | CCCAGC | 3 cut(s) | 124, 864, 1702 |
| HaeII | RGCGCY | 1 cut(s) | 1699 |
| HaeIII | GGCC | 1 cut(s) | 1036 |
| HapII | CCGG | 3 cut(s) | 192, 1185, 1449 |
| HgaI | GACGC | 2 cut(s) | 50, 1030 |
| HhaI | GCGC | 2 cut(s) | 1698, 1844 |
| Hin6I | GCGC | 2 cut(s) | 1696, 1842 |
| HinP1I | GCGC | 2 cut(s) | 1696, 1842 |
| HpaII | CCGG | 3 cut(s) | 192, 1185, 1449 |
| Hpy166II | GTNNAC | 3 cut(s) | 70, 447, 1047 |
| Hpy188I | TCNGA | 9 cut(s) | 17, 670, 775, 1065, 1335, 1410, 1639, 1671, 1881 |
| Hpy188III | TCNNGA | 6 cut(s) | 192, 233, 386, 823, 1583, 1832 |
| Hpy8I | GTNNAC | 3 cut(s) | 70, 447, 1047 |
| Hpy99I | CGWCG | 3 cut(s) | 21, 227, 320 |
| HpyAV | CCTTC | 2 cut(s) | 182, 1394 |
| HpyCH4III | ACNGT | 7 cut(s) | 219, 650, 748, 845, 1255, 1280, 1615 |
| HpyCH4IV | ACGT | 4 cut(s) | 258, 1049, 1104, 1352 |
| HpyCH4V | TGCA | 7 cut(s) | 36, 418, 948, 1488, 1577, 1816, 1898 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1065 |
| HpyF3I | CTNAG | 4 cut(s) | 788, 1064, 1366, 1608 |
| HpySE526I | ACGT | 4 cut(s) | 258, 1049, 1104, 1352 |
| HspAI | GCGC | 2 cut(s) | 1696, 1842 |
| Kpn2I | TCCGGA | 1 cut(s) | 191 |
| Ksp22I | TGATCA | 2 cut(s) | 1500, 1876 |
| LguI | GCTCTTC | 1 cut(s) | 1002 |
| LmnI | GCTCC | 4 cut(s) | 18, 129, 857, 1097 |
| Lsp1109I | GCAGC | 1 cut(s) | 155 |
| LweI | GCATC | 3 cut(s) | 982, 1074, 1586 |
| MabI | ACCWGGT | 1 cut(s) | 1662 |
| MaeI | CTAG | 2 cut(s) | 461, 1088 |
| MaeII | ACGT | 4 cut(s) | 258, 1049, 1104, 1352 |
| MaeIII | GTNAC | 3 cut(s) | 472, 884, 1348 |
| MbiI | CCGCTC | 1 cut(s) | 75 |
| MboII | GAAGA | 5 cut(s) | 400, 588, 989, 1001, 1410 |
| MfeI | CAATTG | 1 cut(s) | 1313 |
| MflI | RGATCY | 1 cut(s) | 194 |
| MhlI | GDGCHC | 2 cut(s) | 25, 1070 |
| MluCI | AATT | 8 cut(s) | 538, 949, 1313, 1404, 1478, 1705, 1818, 1884 |
| MluI | ACGCGT | 1 cut(s) | 597 |
| MlyI | GAGTC | 3 cut(s) | 1301, 1500, 1596 |
| MmeI | TCCRAC | 5 cut(s) | 31, 40, 119, 238, 903 |
| MnlI | CCTC | 6 cut(s) | 55, 221, 616, 1168, 1795, 1820 |
| MroI | TCCGGA | 1 cut(s) | 191 |
| MroXI | GAANNNNTTC | 3 cut(s) | 498, 1404, 1566 |
| MslI | CAYNNNNRTG | 4 cut(s) | 390, 507, 981, 1169 |
| MspI | CCGG | 3 cut(s) | 192, 1185, 1449 |
| MspR9I | CCNGG | 5 cut(s) | 128, 253, 1449, 1450, 1664 |
| MunI | CAATTG | 1 cut(s) | 1313 |
| Mva1269I | GAATGC | 1 cut(s) | 1081 |
| MvaI | CCWGG | 3 cut(s) | 128, 253, 1664 |
| MvnI | CGCG | 2 cut(s) | 61, 599 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1065 |
| NciI | CCSGG | 2 cut(s) | 1449, 1450 |
| NlaIV | GGNNCC | 2 cut(s) | 196, 1563 |
| NmuCI | GTSAC | 1 cut(s) | 1348 |
| NsbI | TGCGCA | 1 cut(s) | 1843 |
| NspI | RCATGY | 1 cut(s) | 40 |
| PaeI | GCATGC | 1 cut(s) | 40 |
| PagI | TCATGA | 2 cut(s) | 385, 1831 |
| PceI | AGGCCT | 1 cut(s) | 1036 |
| PciSI | GCTCTTC | 1 cut(s) | 1002 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1101 |
| PctI | GAATGC | 1 cut(s) | 1081 |
| PdmI | GAANNNNTTC | 3 cut(s) | 498, 1404, 1566 |
| Pfl23II | CGTACG | 1 cut(s) | 142 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 127, 252 |
| PfoI | TCCNGGA | 1 cut(s) | 126 |
| PinAI | ACCGGT | 1 cut(s) | 1184 |
| PkrI | GCNGC | 1 cut(s) | 170 |
| PleI | GAGTC | 3 cut(s) | 1300, 1499, 1596 |
| PpsI | GAGTC | 3 cut(s) | 1300, 1499, 1596 |
| Psp124BI | GAGCTC | 2 cut(s) | 25, 1070 |
| Psp1406I | AACGTT | 1 cut(s) | 258 |
| Psp6I | CCWGG | 3 cut(s) | 126, 251, 1662 |
| PspFI | CCCAGC | 3 cut(s) | 120, 860, 1698 |
| PspGI | CCWGG | 3 cut(s) | 126, 251, 1662 |
| PspLI | CGTACG | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 2 cut(s) | 196, 1563 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1445, 1477 |
| PstNI | CAGNNNCTG | 1 cut(s) | 127 |
| PsuI | RGATCY | 1 cut(s) | 194 |
| RsaI | GTAC | 2 cut(s) | 144, 1175 |
| RsaNI | GTAC | 2 cut(s) | 143, 1174 |
| RseI | CAYNNNNRTG | 4 cut(s) | 390, 507, 981, 1169 |
| SacI | GAGCTC | 2 cut(s) | 25, 1070 |
| SapI | GCTCTTC | 1 cut(s) | 1002 |
| SatI | GCNGC | 1 cut(s) | 169 |
| SchI | GAGTC | 3 cut(s) | 1301, 1500, 1596 |
| ScrFI | CCNGG | 5 cut(s) | 128, 253, 1449, 1450, 1664 |
| SduI | GDGCHC | 2 cut(s) | 25, 1070 |
| SexAI | ACCWGGT | 1 cut(s) | 1662 |
| SfaNI | GCATC | 3 cut(s) | 982, 1074, 1586 |
| SfcI | CTRYAG | 1 cut(s) | 1614 |
| SmaI | CCCGGG | 1 cut(s) | 1450 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 390, 507, 981, 1169 |
| SmlI | CTYRAG | 1 cut(s) | 1755 |
| SmoI | CTYRAG | 1 cut(s) | 1755 |
| SphI | GCATGC | 1 cut(s) | 40 |
| Sse9I | AATT | 8 cut(s) | 538, 949, 1313, 1404, 1478, 1705, 1818, 1884 |
| SseBI | AGGCCT | 1 cut(s) | 1036 |
| SsiI | CCGC | 1 cut(s) | 73 |
| SspMI | CTAG | 2 cut(s) | 461, 1088 |
| SstI | GAGCTC | 2 cut(s) | 25, 1070 |
| StuI | AGGCCT | 1 cut(s) | 1036 |
| StyD4I | CCNGG | 5 cut(s) | 126, 251, 1447, 1448, 1662 |
| TaaI | ACNGT | 7 cut(s) | 219, 650, 748, 845, 1255, 1280, 1615 |
| TaiI | ACGT | 4 cut(s) | 261, 1052, 1107, 1355 |
| TaqI | TCGA | 9 cut(s) | 222, 315, 411, 455, 484, 752, 1476, 1763, 1800 |
| TasI | AATT | 8 cut(s) | 538, 949, 1313, 1404, 1478, 1705, 1818, 1884 |
| TatI | WGTACW | 1 cut(s) | 1173 |
| TscAI | CASTG | 4 cut(s) | 945, 1260, 1716, 1792 |
| TseFI | GTSAC | 1 cut(s) | 1348 |
| TseI | GCWGC | 1 cut(s) | 168 |
| Tsp45I | GTSAC | 1 cut(s) | 1348 |
| TspGWI | ACGGA | 3 cut(s) | 187, 455, 1110 |
| TspMI | CCCGGG | 1 cut(s) | 1448 |
| TspRI | CASTG | 4 cut(s) | 945, 1260, 1716, 1792 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 127, 252 |
| XapI | RAATTY | 4 cut(s) | 1404, 1705, 1818, 1884 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XmaI | CCCGGG | 1 cut(s) | 1448 |
| XmnI | GAANNNNTTC | 3 cut(s) | 498, 1404, 1566 |
| XspI | CTAG | 2 cut(s) | 461, 1088 |