Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011432

Physical Location & Seq

Genomic Coordinates Reverse (-)

40797851 .. 40798952

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24940

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCAATCGCTTTTCAAACAAGTCAATGGGCTTCATAAAACCTCACTCCCCTACTACTCCCATCTCATAGACCACTGTTTGTCCCTCAAATCCTTCACCCACGTCAAAATTTTACATGCCCGGTTGGTGAAAGTGGGACTCAATACCCATACCTTTCTGGGCAATCGTTTTCTCGACGTTTACTTTCGGTTTGGTTCGCTTTTCGATGCATTGAGAGTGTTTGATGAGATTAACTGCAAGAACATTGTGTCTAGGAACATCTGCTTGAAGGGTTTGTGTCGATTTGGCGAGTCTGAGAGGGCACAGCAGGTGTTCGATGAAATGCCTGAGAGAGATGTGGTTAGTTGGAACTCGATGATTTCGGGTTACGTTTCGTGCGGATTGGTTGGTAATGCAATGGGGATGTTTTCGAAAATGCAGAGGTCGGGTGTGAGACCGAGTGAGTACACGTTTTCGATTATGATGTCAGTTGTGTCGTGTGCTGGTCGTGCGAAGCAAGTTCATGGTGGTGTGATTAGGCAGGGTCTGGATTTGTCGAATGTGGTACTTGGGAATTCGTTGATTGGGATGTATGGAAAGATTGGTTTGATGGATTACGCTTTTGGAGTGTTTTTGACTATGAAGGAGGTGGATGTCATTTCTTGGAACACTTTGATTTGGGGTTGTCATAGATCAGGGTATGAAGAATTGGCCGTAGATCAGTTTGTTGTTATGAGAAGCACTGAGCATTCCCCTGATGAGTTTACGATATCAACTGTGATCAATGTTTGTTGTAACTTGCTTGATTTGGAAAGGGATTGGAGGATGCGGTCCGGCTCTTTCAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

276

Amino Acids

31.25

Weight (kDa)

8.55

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	111 - 156	1e-14	PPR repeat family
PPR	PF01535	114 - 144	8e-09	PPR repeat
PPR_2	PF13041	211 - 259	1.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43980
fragaria_vesca	FvH4_2g15270 FvH4_2g15270
malus_domestica	MD10G1008600.v1.1
prunus_persica	Prupe.8G012400_v2.0.a1 Prupe.8G012400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0277991 RchiOBHm_Chr6g0278001
rosa_laevigata	RLG00000013249
rosa_multiflora	Rmu_co8471873.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190600
rosa_rugosa	Rorug06G0113900 Rorug06G0114000
rosa_samantha	Rh2CG626400 Rh6AG223600 Rh6AG223700 Rh6BG227800 Rh6CG230300 Rh6DG221100
rosa_wichuraiana	Rw6G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	298
AciI	CCGC	2 cut(s)	378, 808
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	2 cut(s)	108, 553
AfaI	GTAC	2 cut(s)	446, 546
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	3 cut(s)	16, 268, 823
AjiI	CACGTC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	427
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	1 cut(s)	690
ApoI	RAATTY	2 cut(s)	108, 553
AspS9I	GGNCC	1 cut(s)	810
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	88, 139
AsuII	TTCGAA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	810
BaeGI	GKGCMC	1 cut(s)	304
BccI	CCATC	2 cut(s)	69, 583
BceAI	ACGGC	1 cut(s)	677
BclI	TGATCA	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	810
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	810
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	196, 795
Bpu14I	TTCGAA	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	402
BseGI	GGATG	4 cut(s)	408, 573, 637, 810
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	285, 318, 714
BseSI	GKGCMC	1 cut(s)	304
BshFI	GGCC	1 cut(s)	692
BsiSI	CCGG	2 cut(s)	121, 813
BslFI	GGGAC	2 cut(s)	67, 150
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	67, 150
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	692
Bso31I	GGTCTC	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	671, 697, 759
BspACI	CCGC	2 cut(s)	378, 808
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	3 cut(s)	286, 319, 715
BspMI	ACCTGC	1 cut(s)	298
BspT104I	TTCGAA	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	402
BssMI	GATC	3 cut(s)	671, 697, 759
Bst4CI	ACNGT	2 cut(s)	77, 757
BstBI	TTCGAA	1 cut(s)	410
BstDEI	CTNAG	3 cut(s)	294, 327, 723
BstF5I	GGATG	4 cut(s)	408, 573, 637, 810
BstKTI	GATC	3 cut(s)	674, 700, 762
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	671, 697, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	692
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	4 cut(s)	408, 573, 637, 810
BtsIMutI	CAGTG	2 cut(s)	73, 720
BveI	ACCTGC	1 cut(s)	298
CaiI	CAGNNNCTG	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	810
CpoI	CGGWCCG	1 cut(s)	810
Csp6I	GTAC	2 cut(s)	445, 545
CspI	CGGWCCG	1 cut(s)	810
CviAII	CATG	2 cut(s)	116, 503
CviJI	RGCY	3 cut(s)	31, 692, 816
CviKI_1	RGCY	3 cut(s)	31, 692, 816
CviQI	GTAC	2 cut(s)	445, 545
DdeI	CTNAG	3 cut(s)	294, 327, 723
DpnI	GATC	3 cut(s)	673, 699, 761
DpnII	GATC	3 cut(s)	671, 697, 759
EaeI	YGGCCR	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	427
Eco32I	GATATC	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	810
EcoRI	GAATTC	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	750
EcoT22I	ATGCAT	1 cut(s)	211
FaeI	CATG	2 cut(s)	119, 506
FaqI	GGGAC	2 cut(s)	67, 150
FatI	CATG	2 cut(s)	115, 502
FbaI	TGATCA	1 cut(s)	759
FokI	GGATG	4 cut(s)	415, 580, 644, 817
FspBI	CTAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	692
HapII	CCGG	2 cut(s)	121, 813
Hin1II	CATG	2 cut(s)	119, 506
HinfI	GANTC	2 cut(s)	138, 290
HpaII	CCGG	2 cut(s)	121, 813
HphI	GGTGA	2 cut(s)	88, 139
Hpy166II	GTNNAC	3 cut(s)	181, 447, 744
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	3 cut(s)	173, 527, 823
Hpy8I	GTNNAC	3 cut(s)	181, 447, 744
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	103, 262, 616
HpyCH4III	ACNGT	2 cut(s)	77, 757
HpyCH4IV	ACGT	4 cut(s)	102, 177, 369, 449
HpyCH4V	TGCA	5 cut(s)	4, 209, 237, 395, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	3 cut(s)	294, 327, 723
HpySE526I	ACGT	4 cut(s)	102, 177, 369, 449
Hsp92II	CATG	2 cut(s)	119, 506
Ksp22I	TGATCA	1 cut(s)	759
Kzo9I	GATC	3 cut(s)	671, 697, 759
LweI	GCATC	2 cut(s)	196, 795
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	4 cut(s)	102, 177, 369, 449
MaeIII	GTNAC	2 cut(s)	365, 773
MalI	GATC	3 cut(s)	673, 699, 761
MboI	GATC	3 cut(s)	671, 697, 759
MboII	GAAGA	1 cut(s)	695
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	3 cut(s)	108, 553, 686
MlyI	GAGTC	2 cut(s)	132, 299
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	6 cut(s)	52, 95, 291, 414, 619, 795
Mph1103I	ATGCAT	1 cut(s)	211
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	2 cut(s)	121, 813
MspR9I	CCNGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	727
MwoI	GCNNNNNNNGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	3 cut(s)	671, 697, 759
NlaIII	CATG	2 cut(s)	119, 506
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	410
PaqCI	CACCTGC	1 cut(s)	298
PctI	GAATGC	1 cut(s)	727
PleI	GAGTC	2 cut(s)	132, 298
PpsI	GAGTC	2 cut(s)	132, 298
PspPI	GGNCC	1 cut(s)	810
PstNI	CAGNNNCTG	1 cut(s)	526
RsaI	GTAC	2 cut(s)	446, 546
RsaNI	GTAC	2 cut(s)	445, 545
RseI	CAYNNNNRTG	1 cut(s)	507
Rsr2I	CGGWCCG	1 cut(s)	810
RsrII	CGGWCCG	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	671, 697, 759
Sau96I	GGNCC	1 cut(s)	810
SchI	GAGTC	2 cut(s)	132, 299
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	9 cut(s)	44, 105, 155, 180, 312, 372, 425, 452, 630
SfaNI	GCATC	2 cut(s)	196, 795
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	1 cut(s)	810
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	3 cut(s)	108, 553, 686
SsiI	CCGC	2 cut(s)	378, 808
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	77, 757
TaiI	ACGT	4 cut(s)	105, 180, 372, 452
TaqI	TCGA	8 cut(s)	174, 204, 280, 315, 353, 410, 455, 536
TaqII	GACCGA	1 cut(s)	451
TasI	AATT	3 cut(s)	108, 553, 686
TatI	WGTACW	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	80, 727
TspDTI	ATGAA	5 cut(s)	23, 333, 491, 635, 696
TspRI	CASTG	2 cut(s)	80, 727
VpaK11BI	GGWCC	1 cut(s)	810
XapI	RAATTY	2 cut(s)	108, 553
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.