Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011432

Physical Location & Seq

Genomic Coordinates Forward (+)

15605489 .. 15606861

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0114000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCCCTACTATAATTATGATCTGCATTACAATGGAAGCATACCCACTATAATTATGAATCCATATTCATGGACCAAGGTGGCCAACATAATCTTTATAGATGCACCAGTTGGTGCTGGGTTTTCATACTCTACAACCTCGGAAGGGTACTATACTTCCGATACAAAATCAGCTGCACAGACCTATACTTTCTTAAGAAAGTGGTTATATGCACACCCAAGGTTTCAGGGAAATCAACTGTACATTGGTGGTGACTCATATTCAGGACTTATTGTTCCCATTCTTCTTAAGAATATACTAGAAGGTTTAGAGTCTGGGTCAAGGCCAAGAATGCAACTCCAAGGATACTTGCTTGGAAATCCAGTTTCAAATTCTTTTATTGATGTAAATGAGAGAATCCCATATGTTCACCGAGTGTCACTCATTTCAGATGAAATCTATGAGGCTGCTAAAACTAATTGCAGTGGGGACTATGTCAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATTGTCTTCTACAAATAAATCTTGCACAAATTTTGGAACCCCAATGTGCTTTTGCATCTGGTAGAACAACTGAGTTGGAGTGGGATCTTAGAGCTCGAGAAGCAAGTACTATGGATTATCTCCTTTCAGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

221

Amino Acids

24.89

Weight (kDa)

5.05

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	12 - 199	2.6e-53	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43980
fragaria_vesca	FvH4_2g15270 FvH4_2g15270
malus_domestica	MD10G1008600.v1.1
prunus_persica	Prupe.8G012400_v2.0.a1 Prupe.8G012400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0277991 RchiOBHm_Chr6g0278001
rosa_laevigata	RLG00000013249
rosa_multiflora	Rmu_co8471873.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190600
rosa_rugosa	Rorug06G0113900 Rorug06G0114000
rosa_samantha	Rh2CG626400 Rh6AG223600 Rh6AG223700 Rh6BG227800 Rh6CG230300 Rh6DG221100
rosa_wichuraiana	Rw6G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	370, 558
AdeI	CACNNNGTG	2 cut(s)	415, 503
AfaI	GTAC	3 cut(s)	149, 242, 637
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflII	CTTAAG	2 cut(s)	193, 287
AgsI	TTSAA	2 cut(s)	369, 518
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	2 cut(s)	173, 623
AluI	AGCT	2 cut(s)	173, 623
Alw21I	GWGCWC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	621
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	2 cut(s)	81, 323
ApeKI	GCWGC	2 cut(s)	173, 446
ApoI	RAATTY	2 cut(s)	370, 558
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	263, 401
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	160, 433
BciVI	GTATCC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	299
BfrI	CTTAAG	2 cut(s)	193, 287
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	2 cut(s)	174, 447
BlsI	GCNGC	2 cut(s)	175, 448
BmcAI	AGTACT	1 cut(s)	637
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	567
BmsI	GCATC	2 cut(s)	91, 593
BpiI	GAAGAC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
BsaJI	CCNNGG	4 cut(s)	75, 138, 218, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	107, 362
BseDI	CCNNGG	4 cut(s)	75, 138, 218, 340
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	107, 362
BseXI	GCAGC	2 cut(s)	160, 433
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	83, 325
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	83, 325
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	19, 613
BspANI	GGCC	2 cut(s)	83, 325
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	621
BspQI	GCTCTTC	1 cut(s)	519
BspTI	CTTAAG	2 cut(s)	193, 287
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	107, 362
BssECI	CCNNGG	4 cut(s)	75, 138, 218, 340
BssMI	GATC	2 cut(s)	19, 613
BssT1I	CCWWGG	3 cut(s)	75, 218, 340
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	519
BstAFI	CTTAAG	2 cut(s)	193, 287
BstAUI	TGTACA	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	600, 617
BstKTI	GATC	2 cut(s)	22, 616
BstMBI	GATC	2 cut(s)	19, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 629
BstV1I	GCAGC	2 cut(s)	160, 433
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	613
BstXI	CCANNNNNNTGG	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	83, 325
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	148, 241, 636
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	5 cut(s)	83, 173, 325, 446, 623
CviKI_1	RGCY	5 cut(s)	83, 173, 325, 446, 623
CviQI	GTAC	3 cut(s)	148, 241, 636
DdeI	CTNAG	2 cut(s)	600, 617
DpnI	GATC	2 cut(s)	21, 615
DpnII	GATC	2 cut(s)	19, 613
DraIII	CACNNNGTG	2 cut(s)	415, 503
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	623
Eco130I	CCWWGG	3 cut(s)	75, 218, 340
Eco24I	GRGCYC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	623
EcoT14I	CCWWGG	3 cut(s)	75, 218, 340
EcoT38I	GRGCYC	1 cut(s)	625
ErhI	CCWWGG	3 cut(s)	75, 218, 340
FaeI	CATG	1 cut(s)	72
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	1 cut(s)	68
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	174, 447
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	2 cut(s)	174, 447
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	174, 447
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	83, 325
Hin1II	CATG	1 cut(s)	72
HinfI	GANTC	5 cut(s)	58, 254, 311, 396, 659
HphI	GGTGA	2 cut(s)	263, 401
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	4 cut(s)	142, 160, 430, 658
Hpy188III	TCNNGA	2 cut(s)	264, 626
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	137, 296
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4V	TGCA	8 cut(s)	25, 104, 176, 212, 334, 462, 554, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 629
HpyF3I	CTNAG	2 cut(s)	600, 617
Hsp92II	CATG	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	19, 613
LguI	GCTCTTC	1 cut(s)	519
LpnPI	CCDG	7 cut(s)	102, 120, 212, 249, 300, 375, 573
Lsp1109I	GCAGC	2 cut(s)	160, 433
LweI	GCATC	2 cut(s)	91, 593
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	251, 417, 505
MalI	GATC	2 cut(s)	21, 615
MboI	GATC	2 cut(s)	19, 613
MboII	GAAGA	3 cut(s)	275, 506, 527
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	625
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	6 cut(s)	13, 51, 370, 457, 522, 558
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	248, 320
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	2 cut(s)	148, 436
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	5 cut(s)	194, 288, 489, 525, 664
MslI	CAYNNNNRTG	2 cut(s)	30, 67
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	2 cut(s)	193, 287
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	331, 629
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	19, 613
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	2 cut(s)	251, 417
PaeR7I	CTCGAG	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	519
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	58, 396
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	175, 448
PleI	GAGTC	2 cut(s)	248, 319
PpsI	GAGTC	2 cut(s)	248, 319
Psp124BI	GAGCTC	1 cut(s)	625
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	613
PsyI	GACNNNGTC	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	149, 242, 637
RsaNI	GTAC	3 cut(s)	148, 241, 636
RseI	CAYNNNNRTG	2 cut(s)	30, 67
SacI	GAGCTC	1 cut(s)	625
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	5 cut(s)	194, 288, 489, 525, 664
SatI	GCNGC	2 cut(s)	174, 447
Sau3AI	GATC	2 cut(s)	19, 613
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	2 cut(s)	248, 320
SduI	GDGCHC	1 cut(s)	625
SetI	ASST	7 cut(s)	81, 140, 175, 185, 224, 307, 625
SfaNI	GCATC	2 cut(s)	91, 593
Sfr274I	CTCGAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	2 cut(s)	30, 67
SmlI	CTYRAG	3 cut(s)	193, 287, 624
SmoI	CTYRAG	3 cut(s)	193, 287, 624
Sse9I	AATT	6 cut(s)	13, 51, 370, 457, 522, 558
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	625
StyI	CCWWGG	3 cut(s)	75, 218, 340
TaaI	ACNGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	625
TasI	AATT	6 cut(s)	13, 51, 370, 457, 522, 558
TatI	WGTACW	2 cut(s)	240, 635
TfiI	GAWTC	2 cut(s)	58, 396
Tru1I	TTAA	5 cut(s)	194, 288, 489, 525, 664
Tru9I	TTAA	5 cut(s)	194, 288, 489, 525, 664
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	251, 417
TseI	GCWGC	2 cut(s)	173, 446
Tsp45I	GTSAC	2 cut(s)	251, 417
TspDTI	ATGAA	4 cut(s)	57, 71, 114, 447
TspRI	CASTG	1 cut(s)	469
Tth111I	GACNNNGTC	1 cut(s)	473
Vha464I	CTTAAG	2 cut(s)	193, 287
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	370, 558
XhoI	CTCGAG	1 cut(s)	624
XspI	CTAG	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.