Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011432

Physical Location & Seq

Genomic Coordinates Forward (+)

1009850 .. 1013000

Gene Structure 3151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G012400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGCACTCATTTTCTAAGCAACTTCATGGGCTTCATAAAACCTCACTCTCCTATTATTCTCATCTAATAGATCACTGTTTGTCACTAAAGTCTTTAAATTTTGCCAAAGTTATACATGCCCAGTTGATAAAAGTGGGGTTTAACAGCCATACTTTTCTGGGTAACCGTTGTCTCGATGTTTACTTTCGGTTTGGTAACACCGTGTACGATGCATTGAAAGTGTTTGATGAGATTACCGATAAGAATATTGTGTCTTGGAACATTTGCTTGAAAGGGTTCTGTCGATTTGGTGAGCTTCAAAGGGCACACAATATGTTCGCTGAAATGCCTGTTAGAGATGTAGTTAGTTGGAACTCGATGATTTCAGGTTGTGTTTCAGGTGGGTTTTTTGATAATGCATTCTGCCTTTTCTCAAAAATGCAAATCGCGGGTATGAGACCAAGTGAGTACACATTCTCAATTGTAATGTCGCTTGTGACGTGTTCTTGTCATGGTAAGCAAATTCATGGTGGTATGATTAGGAATGGTATGAATTTATCAAATTTGATACTCGGGAATTCTTTGATTGACATGTATGGAAAGCTTGGATGTGTGGATTATGCTTTTGGTGTGTTTTTCACTATGGAGGAGGTGGATATTATCTCATGGAATTCTTTGATATCGGGTTGTCATAGATCAGGGTATGCAGAGCTGGCACTAGATCAGTTCTTTCAGATGAGAAGCACCAAGCATTCACCTGATGAGTTTACAATATCATCTGTTATCAATGTTTGTTGTAACTTGCCTAATTTGGAAAAGGGTAAGCAAATATTTGCTTTCTGCTTGAAGGTGGGATTCTTATCTAATAGCATTATATCAAGTGCTGCGATTGATCTGTTCTCCAAGTGCAACAGATTGGAGGATGCAATCCGGCTCTTTGAAGAACTAGATTGGTGGGATTCAGCTGTTTGCAATTCCATGATTTCAAGCTATGCACGGCATGAATGTGTGGAGGATGCTCTGCAACTTTTTGTGTTGACCTTGAGGGAGAACCTGAGGCCAACCGAGTTTACACTTAGCAGTTTGCTTAATTCTGCGTCCATTTTTCTTCCAGCGGAGTTGGGTAGCCAGATCCATTCTTTGGTTGTTAAGTTAGGCTTTGAGTCAGACCCAATTGTTGCTAGTTCACTTATTGATTTTTACAGTAAAGTTGGATTAATAAATTATGCCATGAAAATCTTTGCAAATGTAGGTGTGAAAGATTTGACATCTTGGAACACGATGATTATTGGCATGGCTCACAATGGTAAAGTATTTGAGACCCTGAACATTTTCGAGGAATTGATTAGTGAAGGCATTGCACCAGATAAATTAACACTAGCCGGAGTTTTATTAGCTTGCAACCTTGGGGGTTTAGTTGATGAGGGAATGACAATGTTTTTATCCATGGAGAAGGAATATGGAATCGTACCTCAGGACGAGCACTATATGTCCATAGTGGATTTGTTGAGTAGTACTGGTAAACTCAAAGAAGCAATAGATATAGTAGCAGAAATGCCTTACGAAGCTAGTTCCATGATATGGGAATTGATTCTTCGTGCTTGTGTGATTCATGGAGACTTTAAACTCACTGAAACAGTTGCACATAGGATGATGCAGTCGGAAGCACAGTCATCTCTACCTTATTTAGTGCTCGCTCGAGCATATGAAATGCGAGGAAGATGGGAAAGTACGATTCGAGTCAGGAAAGCCATGAAACTTAAAGGTGTGAGGAATGTGATCGGATGTAGTAAAATTGGGATACAGAACCATGTATATACTTTTAAGGCAGACCAATTACAGCCTCACAGAGGTAAGGACATTTATTTGATATTGAGATTACTGTGTTGGGAAATGGAAGCTGAAGATTATATGACAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

634

Amino Acids

71.27

Weight (kDa)

6.07

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43980
fragaria_vesca	FvH4_2g15270 FvH4_2g15270
malus_domestica	MD10G1008600.v1.1
prunus_persica	Prupe.8G012400_v2.0.a1 Prupe.8G012400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0277991 RchiOBHm_Chr6g0278001
rosa_laevigata	RLG00000013249
rosa_multiflora	Rmu_co8471873.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190600
rosa_rugosa	Rorug06G0113900 Rorug06G0114000
rosa_samantha	Rh2CG626400 Rh6AG223600 Rh6AG223700 Rh6BG227800 Rh6CG230300 Rh6DG221100
rosa_wichuraiana	Rw6G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1120, 1560
AccII	CGCG	1 cut(s)	428
AciI	CCGC	2 cut(s)	428, 1094
AclWI	GGATC	1 cut(s)	1105
AcsI	RAATTY	6 cut(s)	97, 501, 532, 541, 556, 649
AcuI	CTGAAG	1 cut(s)	1902
AfaI	GTAC	5 cut(s)	206, 449, 1449, 1495, 1711
AfiI	CCNNNNNNNGG	3 cut(s)	1120, 1560, 1829
AflIII	ACRYGT	2 cut(s)	479, 570
AgsI	TTSAA	6 cut(s)	217, 271, 299, 826, 920, 966
AjiI	CACGTC	1 cut(s)	480
AluBI	AGCT	8 cut(s)	295, 583, 691, 944, 969, 1376, 1547, 1880
AluI	AGCT	8 cut(s)	295, 583, 691, 944, 969, 1376, 1547, 1880
Alw21I	GWGCWC	2 cut(s)	1464, 1674
Alw26I	GTCTC	4 cut(s)	176, 430, 1292, 1590
AlwI	GGATC	1 cut(s)	1105
Ama87I	CYCGRG	2 cut(s)	551, 1677
AoxI	GGCC	1 cut(s)	1037
ApeKI	GCWGC	1 cut(s)	863
ApoI	RAATTY	6 cut(s)	97, 501, 532, 541, 556, 649
AseI	ATTAAT	1 cut(s)	1196
Asp700I	GAANNNNTTC	3 cut(s)	275, 1310, 1569
AsuHPI	GGTGA	2 cut(s)	302, 726
AvaI	CYCGRG	2 cut(s)	551, 1677
AxyI	CCTNAGG	2 cut(s)	1034, 1452
BaeGI	GKGCMC	1 cut(s)	307
Bbv12I	GWGCWC	2 cut(s)	1464, 1674
BbvI	GCAGC	1 cut(s)	850
BccI	CCATC	1 cut(s)	1695
BceAI	ACGGC	1 cut(s)	992
BciVI	GTATCC	1 cut(s)	1773
BcoDI	GTCTC	4 cut(s)	176, 430, 1292, 1590
BfaI	CTAG	5 cut(s)	698, 926, 1161, 1358, 1548
BfuI	GTATCC	1 cut(s)	1773
BisI	GCNGC	1 cut(s)	864
BlsI	GCNGC	1 cut(s)	865
BmcAI	AGTACT	1 cut(s)	1495
BmeT110I	CYCGRG	2 cut(s)	551, 1677
BmgBI	CACGTC	1 cut(s)	480
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	4 cut(s)	199, 892, 985, 1623
BmuI	ACTGGG	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	1042
BsaBI	GATNNNNATC	1 cut(s)	838
BsaI	GGTCTC	2 cut(s)	430, 1292
BsaJI	CCNNGG	2 cut(s)	1384, 1425
Bsc4I	CCNNNNNNNGG	3 cut(s)	1120, 1560, 1829
Bse1I	ACTGG	2 cut(s)	121, 1501
Bse21I	CCTNAGG	2 cut(s)	1034, 1452
Bse3DI	GCAATG	1 cut(s)	1335
Bse8I	GATNNNNATC	1 cut(s)	838
BseDI	CCNNGG	2 cut(s)	1384, 1425
BseGI	GGATG	5 cut(s)	593, 907, 1000, 1635, 1769
BseJI	GATNNNNATC	1 cut(s)	838
BseLI	CCNNNNNNNGG	3 cut(s)	1120, 1560, 1829
BseMI	GCAATG	1 cut(s)	1335
BseMII	CTCAG	2 cut(s)	1025, 1466
BseNI	ACTGG	2 cut(s)	121, 1501
BseRI	GAGGAG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	850
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	1039
BsiHKAI	GWGCWC	2 cut(s)	1464, 1674
BsiHKCI	CYCGRG	2 cut(s)	551, 1677
BsiSI	CCGG	2 cut(s)	910, 1362
BslI	CCNNNNNNNGG	3 cut(s)	1120, 1560, 1829
BsmAI	GTCTC	4 cut(s)	176, 430, 1292, 1590
BsmI	GAATGC	2 cut(s)	398, 730
BsnI	GGCC	1 cut(s)	1039
Bso31I	GGTCTC	2 cut(s)	430, 1292
BsoBI	CYCGRG	2 cut(s)	551, 1677
Bsp1286I	GDGCHC	3 cut(s)	307, 1464, 1674
Bsp143I	GATC	6 cut(s)	70, 674, 700, 871, 1110, 1758
Bsp19I	CCATGG	1 cut(s)	1425
BspACI	CCGC	2 cut(s)	428, 1094
BspANI	GGCC	1 cut(s)	1039
BspCNI	CTCAG	2 cut(s)	1026, 1465
BspFNI	CGCG	1 cut(s)	428
BspPI	GGATC	1 cut(s)	1105
BspTNI	GGTCTC	2 cut(s)	430, 1292
BsrDI	GCAATG	1 cut(s)	1335
BsrI	ACTGG	2 cut(s)	121, 1501
BssECI	CCNNGG	2 cut(s)	1384, 1425
BssMI	GATC	6 cut(s)	70, 674, 700, 871, 1110, 1758
BssT1I	CCWWGG	2 cut(s)	1384, 1425
Bst4CI	ACNGT	7 cut(s)	77, 167, 202, 1184, 1618, 1650, 1863
BstC8I	GCNNGC	3 cut(s)	693, 1378, 1674
BstDEI	CTNAG	4 cut(s)	15, 1034, 1055, 1452
BstDSI	CCRYGG	1 cut(s)	1425
BstEII	GGTNACC	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	1827
BstF5I	GGATG	5 cut(s)	593, 907, 1000, 1635, 1769
BstFNI	CGCG	1 cut(s)	428
BstKTI	GATC	6 cut(s)	73, 677, 703, 874, 1113, 1761
BstMAI	GTCTC	4 cut(s)	176, 430, 1292, 1590
BstMBI	GATC	6 cut(s)	70, 674, 700, 871, 1110, 1758
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNSI	RCATGY	2 cut(s)	119, 574
BstPI	GGTNACC	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	850
BstX2I	RGATCY	1 cut(s)	1110
BstYI	RGATCY	1 cut(s)	1110
Bsu36I	CCTNAGG	2 cut(s)	1034, 1452
BsuI	GTATCC	1 cut(s)	1773
BsuRI	GGCC	1 cut(s)	1039
BtgI	CCRYGG	1 cut(s)	1425
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	5 cut(s)	593, 907, 1000, 1635, 1769
BtsIMutI	CAGTG	2 cut(s)	73, 1608
Cac8I	GCNNGC	3 cut(s)	693, 1378, 1674
CseI	GACGC	1 cut(s)	1065
Csp6I	GTAC	5 cut(s)	205, 448, 1448, 1494, 1710
CviQI	GTAC	5 cut(s)	205, 448, 1448, 1494, 1710
DdeI	CTNAG	4 cut(s)	15, 1034, 1055, 1452
DpnI	GATC	6 cut(s)	72, 676, 702, 873, 1112, 1760
DpnII	GATC	6 cut(s)	70, 674, 700, 871, 1110, 1758
DraI	TTTAAA	2 cut(s)	96, 1603
Eco130I	CCWWGG	2 cut(s)	1384, 1425
Eco31I	GGTCTC	2 cut(s)	430, 1292
Eco32I	GATATC	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	1902
Eco81I	CCTNAGG	2 cut(s)	1034, 1452
Eco88I	CYCGRG	2 cut(s)	551, 1677
Eco91I	GGTNACC	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	1827
EcoO65I	GGTNACC	1 cut(s)	161
EcoRI	GAATTC	2 cut(s)	556, 649
EcoRV	GATATC	1 cut(s)	660
EcoT14I	CCWWGG	2 cut(s)	1384, 1425
EcoT22I	ATGCAT	2 cut(s)	214, 400
ErhI	CCWWGG	2 cut(s)	1384, 1425
FalI	AAGNNNNNCTT	2 cut(s)	1121, 1153
FauI	CCCGC	1 cut(s)	421
FauNDI	CATATG	1 cut(s)	1684
Fnu4HI	GCNGC	1 cut(s)	864
FokI	GGATG	5 cut(s)	600, 914, 1007, 1642, 1776
Fsp4HI	GCNGC	1 cut(s)	864
FspBI	CTAG	5 cut(s)	698, 926, 1161, 1358, 1548
GluI	GCNGC	1 cut(s)	864
HaeIII	GGCC	1 cut(s)	1039
HapII	CCGG	2 cut(s)	910, 1362
HgaI	GACGC	1 cut(s)	1065
HincII	GTYRAC	1 cut(s)	1017
HindII	GTYRAC	1 cut(s)	1017
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	8 cut(s)	834, 938, 1142, 1443, 1570, 1588, 1714, 1719
HpaII	CCGG	2 cut(s)	910, 1362
HphI	GGTGA	2 cut(s)	302, 726
Hpy166II	GTNNAC	8 cut(s)	181, 205, 450, 747, 1017, 1050, 1166, 1502
Hpy188I	TCNGA	4 cut(s)	714, 1147, 1642, 1763
Hpy188III	TCNNGA	4 cut(s)	173, 553, 1454, 1723
Hpy8I	GTNNAC	8 cut(s)	181, 205, 450, 747, 1017, 1050, 1166, 1502
HpyAV	CCTTC	3 cut(s)	820, 1325, 1426
HpyCH4III	ACNGT	7 cut(s)	77, 167, 202, 1184, 1618, 1650, 1863
HpyCH4IV	ACGT	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	4 cut(s)	15, 1034, 1055, 1452
HpySE526I	ACGT	1 cut(s)	479
Kzo9I	GATC	6 cut(s)	70, 674, 700, 871, 1110, 1758
Lsp1109I	GCAGC	1 cut(s)	850
LweI	GCATC	4 cut(s)	199, 892, 985, 1623
MaeI	CTAG	5 cut(s)	698, 926, 1161, 1358, 1548
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	5 cut(s)	81, 161, 194, 475, 776
MalI	GATC	6 cut(s)	72, 676, 702, 873, 1112, 1760
MboI	GATC	6 cut(s)	70, 674, 700, 871, 1110, 1758
MboII	GAAGA	5 cut(s)	932, 1079, 1565, 1710, 1895
MfeI	CAATTG	2 cut(s)	459, 1152
MflI	RGATCY	1 cut(s)	1110
MhlI	GDGCHC	3 cut(s)	307, 1464, 1674
MlyI	GAGTC	2 cut(s)	1151, 1728
MmeI	TCCRAC	3 cut(s)	329, 1171, 1620
Mph1103I	ATGCAT	2 cut(s)	214, 400
MroXI	GAANNNNTTC	3 cut(s)	275, 1310, 1569
MseI	TTAA	9 cut(s)	95, 141, 1068, 1128, 1196, 1352, 1602, 1740, 1803
MslI	CAYNNNNRTG	1 cut(s)	984
MspA1I	CMGCKG	2 cut(s)	944, 1094
MspI	CCGG	2 cut(s)	910, 1362
MunI	CAATTG	2 cut(s)	459, 1152
Mva1269I	GAATGC	2 cut(s)	398, 730
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	692
NcoI	CCATGG	1 cut(s)	1425
NdeI	CATATG	1 cut(s)	1684
NdeII	GATC	6 cut(s)	70, 674, 700, 871, 1110, 1758
NmuCI	GTSAC	2 cut(s)	81, 475
NsiI	ATGCAT	2 cut(s)	214, 400
NspI	RCATGY	2 cut(s)	119, 574
PaeR7I	CTCGAG	1 cut(s)	1677
PciI	ACATGT	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PctI	GAATGC	2 cut(s)	398, 730
PdmI	GAANNNNTTC	3 cut(s)	275, 1310, 1569
PfeI	GAWTC	6 cut(s)	834, 938, 1443, 1570, 1588, 1714
PflMI	CCANNNNNTGG	2 cut(s)	1120, 1560
PkrI	GCNGC	1 cut(s)	865
PleI	GAGTC	2 cut(s)	1150, 1727
PpsI	GAGTC	2 cut(s)	1150, 1727
PscI	ACATGT	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	1196
PspEI	GGTNACC	1 cut(s)	161
PspXI	VCTCGAGB	1 cut(s)	1677
PsuI	RGATCY	1 cut(s)	1110
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	5 cut(s)	206, 449, 1449, 1495, 1711
RsaNI	GTAC	5 cut(s)	205, 448, 1448, 1494, 1710
RseI	CAYNNNNRTG	1 cut(s)	984
SaqAI	TTAA	9 cut(s)	95, 141, 1068, 1128, 1196, 1352, 1602, 1740, 1803
SatI	GCNGC	1 cut(s)	864
Sau3AI	GATC	6 cut(s)	70, 674, 700, 871, 1110, 1758
ScaI	AGTACT	1 cut(s)	1495
SchI	GAGTC	2 cut(s)	1151, 1728
SduI	GDGCHC	3 cut(s)	307, 1464, 1674
SfaNI	GCATC	4 cut(s)	199, 892, 985, 1623
Sfr274I	CTCGAG	1 cut(s)	1677
SlaI	CTCGAG	1 cut(s)	1677
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	2 cut(s)	1021, 1677
SmoI	CTYRAG	2 cut(s)	1021, 1677
SsiI	CCGC	2 cut(s)	428, 1094
SspI	AATATT	2 cut(s)	247, 810
SspMI	CTAG	5 cut(s)	698, 926, 1161, 1358, 1548
StyI	CCWWGG	2 cut(s)	1384, 1425
TaaI	ACNGT	7 cut(s)	77, 167, 202, 1184, 1618, 1650, 1863
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	6 cut(s)	174, 283, 356, 1314, 1678, 1717
TatI	WGTACW	2 cut(s)	447, 1493
TfiI	GAWTC	6 cut(s)	834, 938, 1443, 1570, 1588, 1714
Tru1I	TTAA	9 cut(s)	95, 141, 1068, 1128, 1196, 1352, 1602, 1740, 1803
Tru9I	TTAA	9 cut(s)	95, 141, 1068, 1128, 1196, 1352, 1602, 1740, 1803
TscAI	CASTG	2 cut(s)	80, 1615
TseFI	GTSAC	2 cut(s)	81, 475
TseI	GCWGC	1 cut(s)	863
Tsp45I	GTSAC	2 cut(s)	81, 475
TspDTI	ATGAA	9 cut(s)	14, 23, 494, 545, 996, 1226, 1580, 1701, 1748
TspRI	CASTG	2 cut(s)	80, 1615
Van91I	CCANNNNNTGG	2 cut(s)	1120, 1560
VspI	ATTAAT	1 cut(s)	1196
XagI	CCTNNNNNAGG	1 cut(s)	1827
XapI	RAATTY	6 cut(s)	97, 501, 532, 541, 556, 649
XceI	RCATGY	2 cut(s)	119, 574
XhoI	CTCGAG	1 cut(s)	1677
XmnI	GAANNNNTTC	3 cut(s)	275, 1310, 1569
XspI	CTAG	5 cut(s)	698, 926, 1161, 1358, 1548
ZrmI	AGTACT	1 cut(s)	1495
Zsp2I	ATGCAT	2 cut(s)	214, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.