Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471873.1

Orthogroup ID

OG0011432

Physical Location & Seq

Genomic Coordinates Reverse (-)

525 .. 2018

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471873.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

atgcagaggtcgggtgtgagaccgagtgagtacacgttttcgattatgatgtcagttgtgtcgtgtgctggtcgtgcgaagcaagttcatggtggtgtgattaggcagggtctggatttgtcgaatgtggtacttgggaattcgttgattgggatgtatggaaagattggtttgatggattacgcttttggagtgtttttgactatgaaggaggtggatgtcatttcttggaacactttgatttggggttgtcatagatcagggtatgaagaattggccgtagatcagtttgttgttatgagaagcactgagcattcccctgatgagtttacgatatcaactgtgatcaatgtttgttgtaacttgcttgatttggaaaggggtaagcaaattattgctttcagcttcaaggtgggattcttttctaatagcattgtatcaagtgctgctattgacatgttttccaaatgcaacagattggaggatgcggtccggctctttcaagaactaagctggtgggattcagccgtttgcaattccatgatttcaagctatgcaaggcatggttgtgcggagaatgccgtgctgctttttgtgctgaccttgagaaagaatctcaggccaactgagtttactcttagcagtgcactgagttgtatgtccacttttcttccagttgagcagggtttccaaatccattcttgggttattaagttaggctttgagtcagatgctattgtcgctagttcacttgttgatttttacactaaacttggattaataaatcatgccatgaaaatctttgcaagtatgggggtgaaagatttgatatcttggaacaccatgattatgggtttggctcacaatggtaaattatttgagaccttggacacattcaaggaattagttagtgaaggtatgcaggcagataatgtaacattagctggagttttattggcttgcaactttgggagctttgtggatgagggtatgtcaatatttaggtccatggagaaggaatatgggatcaaacctgcggaagagcattatacgtgcataatagagttgttgacttgtgtaggtaaactcaaagcagcaatggatatagtagcagcaatgccttatgaacctagttctgtgatatgggaatcaatgcttcgtgcttgtgcgattcagcaagacatcaaaattactgaaagagttgcacaactgatgatgaagtcagaaccacagtcatctctaccttatttggtgctagctcgagcatatgaaatgagaggaagatgggaaagcatgattcgagttacaaaagagatgaaacataaaggcgtaaagaatgttgtcggatgtagttggattgagatacagaaacatgtatatacttttaaggcagaccaattgcagcatcatagaggtaaagacatttatatgatattgagattgctgtcttgggaaatggaagctgattgttacattgacaatctaacaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

497

Amino Acids

55.97

Weight (kDa)

6.21

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43980
fragaria_vesca	FvH4_2g15270 FvH4_2g15270
malus_domestica	MD10G1008600.v1.1
prunus_persica	Prupe.8G012400_v2.0.a1 Prupe.8G012400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0277991 RchiOBHm_Chr6g0278001
rosa_laevigata	RLG00000013249
rosa_multiflora	Rmu_co8471873.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190600
rosa_rugosa	Rorug06G0113900 Rorug06G0114000
rosa_samantha	Rh2CG626400 Rh6AG223600 Rh6AG223700 Rh6BG227800 Rh6CG230300 Rh6DG221100
rosa_wichuraiana	Rw6G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1042
AciI	CCGC	3 cut(s)	488, 572, 1037
AclWI	GGATC	1 cut(s)	1034
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	139
AfaI	GTAC	2 cut(s)	32, 132
AfiI	CCNNNNNNNGG	1 cut(s)	703
AflIII	ACRYGT	3 cut(s)	33, 456, 1372
AgsI	TTSAA	4 cut(s)	409, 503, 549, 898
AluBI	AGCT	7 cut(s)	405, 513, 552, 944, 975, 1259, 1463
AluI	AGCT	7 cut(s)	405, 513, 552, 944, 975, 1259, 1463
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	2 cut(s)	13, 875
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	1034
AlwNI	CAGNNNCTG	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	1260
AoxI	GGCC	2 cut(s)	276, 620
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	5 cut(s)	446, 586, 1094, 1112, 1402
ApoI	RAATTY	1 cut(s)	139
AseI	ATTAAT	1 cut(s)	779
AspS9I	GGNCC	2 cut(s)	490, 1005
AsuHPI	GGTGA	1 cut(s)	829
AsuNHI	GCTAGC	1 cut(s)	1255
AvaI	CYCGRG	1 cut(s)	1260
AvaII	GGWCC	2 cut(s)	490, 1005
BaeGI	GKGCMC	1 cut(s)	649
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	5 cut(s)	433, 573, 1106, 1124, 1414
BccI	CCATC	2 cut(s)	169, 1278
BceAI	ACGGC	3 cut(s)	263, 512, 566
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	13, 875
BfaI	CTAG	3 cut(s)	744, 1131, 1256
BfuAI	ACCTGC	1 cut(s)	1042
BisI	GCNGC	5 cut(s)	447, 587, 1095, 1113, 1403
BlsI	GCNGC	5 cut(s)	448, 588, 1096, 1114, 1404
Bme18I	GGWCC	2 cut(s)	490, 1005
BmeT110I	CYCGRG	1 cut(s)	1260
BmgT120I	GGNCC	2 cut(s)	490, 1005
BmsI	GCATC	3 cut(s)	475, 721, 1414
BmtI	GCTAGC	1 cut(s)	1259
BpmI	CTGGAG	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	625
BsaAI	YACGTR	1 cut(s)	1053
BsaI	GGTCTC	2 cut(s)	13, 875
BsaJI	CCNNGG	2 cut(s)	885, 1008
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse1I	ACTGG	1 cut(s)	674
Bse3DI	GCAATG	2 cut(s)	1104, 1122
BseDI	CCNNGG	2 cut(s)	885, 1008
BseGI	GGATG	5 cut(s)	159, 223, 490, 988, 1352
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	2 cut(s)	1104, 1122
BseMII	CTCAG	4 cut(s)	300, 618, 631, 641
BseNI	ACTGG	1 cut(s)	674
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	5 cut(s)	433, 573, 1106, 1124, 1414
BshFI	GGCC	2 cut(s)	278, 622
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	1260
BsiSI	CCGG	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	2 cut(s)	13, 875
BsmI	GAATGC	2 cut(s)	313, 583
BsnI	GGCC	2 cut(s)	278, 622
Bso31I	GGTCTC	2 cut(s)	13, 875
BsoBI	CYCGRG	1 cut(s)	1260
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	4 cut(s)	257, 283, 345, 1026
Bsp19I	CCATGG	1 cut(s)	1008
BspACI	CCGC	3 cut(s)	488, 572, 1037
BspANI	GGCC	2 cut(s)	278, 622
BspCNI	CTCAG	4 cut(s)	301, 619, 630, 642
BspMI	ACCTGC	1 cut(s)	1042
BspOI	GCTAGC	1 cut(s)	1259
BspPI	GGATC	1 cut(s)	1034
BspQI	GCTCTTC	1 cut(s)	1035
BspTNI	GGTCTC	2 cut(s)	13, 875
BsrDI	GCAATG	2 cut(s)	1104, 1122
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	2 cut(s)	885, 1008
BssMI	GATC	4 cut(s)	257, 283, 345, 1026
BssT1I	CCWWGG	2 cut(s)	885, 1008
Bst4CI	ACNGT	2 cut(s)	343, 1233
Bst6I	CTCTTC	1 cut(s)	1035
BstBAI	YACGTR	1 cut(s)	1053
BstC8I	GCNNGC	3 cut(s)	924, 961, 1257
BstDEI	CTNAG	6 cut(s)	309, 509, 617, 627, 638, 650
BstDSI	CCRYGG	1 cut(s)	1008
BstF5I	GGATG	5 cut(s)	159, 223, 490, 988, 1352
BstKTI	GATC	4 cut(s)	260, 286, 348, 1029
BstMAI	GTCTC	2 cut(s)	13, 875
BstMBI	GATC	4 cut(s)	257, 283, 345, 1026
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 578, 595, 740
BstNSI	RCATGY	2 cut(s)	460, 1376
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	5 cut(s)	433, 573, 1106, 1124, 1414
BstXI	CCANNNNNNTGG	1 cut(s)	850
BsuRI	GGCC	2 cut(s)	278, 622
BtgI	CCRYGG	1 cut(s)	1008
BtsCI	GGATG	5 cut(s)	159, 223, 490, 988, 1352
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	3 cut(s)	306, 647, 649
BveI	ACCTGC	1 cut(s)	1042
Cac8I	GCNNGC	3 cut(s)	924, 961, 1257
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	490, 1005
CpoI	CGGWCCG	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	31, 131
CspI	CGGWCCG	1 cut(s)	490
CviQI	GTAC	2 cut(s)	31, 131
DdeI	CTNAG	6 cut(s)	309, 509, 617, 627, 638, 650
DpnI	GATC	4 cut(s)	259, 285, 347, 1028
DpnII	GATC	4 cut(s)	257, 283, 345, 1026
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
Eco130I	CCWWGG	2 cut(s)	885, 1008
Eco31I	GGTCTC	2 cut(s)	13, 875
Eco32I	GATATC	2 cut(s)	336, 831
Eco47I	GGWCC	2 cut(s)	490, 1005
Eco88I	CYCGRG	1 cut(s)	1260
EcoRI	GAATTC	1 cut(s)	139
EcoRV	GATATC	2 cut(s)	336, 831
EcoT14I	CCWWGG	2 cut(s)	885, 1008
ErhI	CCWWGG	2 cut(s)	885, 1008
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FauNDI	CATATG	1 cut(s)	1267
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	5 cut(s)	447, 587, 1095, 1113, 1403
FokI	GGATG	5 cut(s)	166, 230, 497, 995, 1359
Fsp4HI	GCNGC	5 cut(s)	447, 587, 1095, 1113, 1403
FspBI	CTAG	3 cut(s)	744, 1131, 1256
GluI	GCNGC	5 cut(s)	447, 587, 1095, 1113, 1403
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	2 cut(s)	278, 622
HapII	CCGG	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	1071
HindII	GTYRAC	1 cut(s)	1071
HinfI	GANTC	7 cut(s)	417, 521, 613, 725, 1148, 1171, 1297
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	1 cut(s)	829
Hpy166II	GTNNAC	8 cut(s)	33, 330, 633, 647, 663, 749, 1071, 1085
Hpy188I	TCNGA	3 cut(s)	730, 1225, 1346
Hpy188III	TCNNGA	2 cut(s)	113, 503
Hpy8I	GTNNAC	8 cut(s)	33, 330, 633, 647, 663, 749, 1071, 1085
HpyAV	CCTTC	3 cut(s)	202, 908, 1009
HpyCH4III	ACNGT	2 cut(s)	343, 1233
HpyCH4IV	ACGT	2 cut(s)	35, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 578, 595, 740
HpyF3I	CTNAG	6 cut(s)	309, 509, 617, 627, 638, 650
HpySE526I	ACGT	2 cut(s)	35, 1052
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	257, 283, 345, 1026
LguI	GCTCTTC	1 cut(s)	1035
LmnI	GCTCC	1 cut(s)	972
Lsp1109I	GCAGC	5 cut(s)	433, 573, 1106, 1124, 1414
LweI	GCATC	3 cut(s)	475, 721, 1414
MaeI	CTAG	3 cut(s)	744, 1131, 1256
MaeII	ACGT	2 cut(s)	35, 1052
MaeIII	GTNAC	4 cut(s)	359, 934, 1303, 1469
MalI	GATC	4 cut(s)	259, 285, 347, 1028
MboI	GATC	4 cut(s)	257, 283, 345, 1026
MboII	GAAGA	4 cut(s)	281, 662, 1052, 1293
MfeI	CAATTG	1 cut(s)	1397
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	8 cut(s)	139, 272, 390, 535, 872, 902, 1188, 1397
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	2 cut(s)	1324, 1334
MnlI	CCTC	5 cut(s)	205, 475, 979, 1271, 1406
MseI	TTAA	3 cut(s)	711, 779, 1386
MslI	CAYNNNNRTG	4 cut(s)	93, 567, 848, 1427
MspI	CCGG	1 cut(s)	493
MunI	CAATTG	1 cut(s)	1397
Mva1269I	GAATGC	2 cut(s)	313, 583
MwoI	GCNNNNNNNGC	4 cut(s)	74, 578, 595, 740
NcoI	CCATGG	1 cut(s)	1008
NdeI	CATATG	1 cut(s)	1267
NdeII	GATC	4 cut(s)	257, 283, 345, 1026
NheI	GCTAGC	1 cut(s)	1255
NspI	RCATGY	2 cut(s)	460, 1376
PaeR7I	CTCGAG	1 cut(s)	1260
PciI	ACATGT	2 cut(s)	456, 1372
PciSI	GCTCTTC	1 cut(s)	1035
PctI	GAATGC	2 cut(s)	313, 583
PfeI	GAWTC	6 cut(s)	417, 521, 613, 1148, 1171, 1297
PkrI	GCNGC	5 cut(s)	448, 588, 1096, 1114, 1404
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
Ppu21I	YACGTR	1 cut(s)	1053
PscI	ACATGT	2 cut(s)	456, 1372
PshBI	ATTAAT	1 cut(s)	779
PspPI	GGNCC	2 cut(s)	490, 1005
PspXI	VCTCGAGB	1 cut(s)	1260
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	2 cut(s)	32, 132
RsaNI	GTAC	2 cut(s)	31, 131
RseI	CAYNNNNRTG	4 cut(s)	93, 567, 848, 1427
Rsr2I	CGGWCCG	1 cut(s)	490
RsrII	CGGWCCG	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	1035
SaqAI	TTAA	3 cut(s)	711, 779, 1386
SatI	GCNGC	5 cut(s)	447, 587, 1095, 1113, 1403
Sau3AI	GATC	4 cut(s)	257, 283, 345, 1026
Sau96I	GGNCC	2 cut(s)	490, 1005
SchI	GAGTC	1 cut(s)	734
SduI	GDGCHC	1 cut(s)	649
SfaNI	GCATC	3 cut(s)	475, 721, 1414
Sfr274I	CTCGAG	1 cut(s)	1260
SinI	GGWCC	2 cut(s)	490, 1005
SlaI	CTCGAG	1 cut(s)	1260
SmiMI	CAYNNNNRTG	4 cut(s)	93, 567, 848, 1427
SmlI	CTYRAG	2 cut(s)	604, 1260
SmoI	CTYRAG	2 cut(s)	604, 1260
Sse9I	AATT	8 cut(s)	139, 272, 390, 535, 872, 902, 1188, 1397
SsiI	CCGC	3 cut(s)	488, 572, 1037
SspI	AATATT	1 cut(s)	999
SspMI	CTAG	3 cut(s)	744, 1131, 1256
StyI	CCWWGG	2 cut(s)	885, 1008
TaaI	ACNGT	2 cut(s)	343, 1233
TaiI	ACGT	2 cut(s)	38, 1055
TaqI	TCGA	4 cut(s)	41, 122, 1261, 1300
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	8 cut(s)	139, 272, 390, 535, 872, 902, 1188, 1397
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	6 cut(s)	417, 521, 613, 1148, 1171, 1297
Tru1I	TTAA	3 cut(s)	711, 779, 1386
Tru9I	TTAA	3 cut(s)	711, 779, 1386
TscAI	CASTG	3 cut(s)	313, 649, 654
TseI	GCWGC	5 cut(s)	446, 586, 1094, 1112, 1402
TspDTI	ATGAA	8 cut(s)	77, 221, 282, 809, 1140, 1232, 1284, 1331
TspRI	CASTG	3 cut(s)	313, 649, 654
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	2 cut(s)	490, 1005
VspI	ATTAAT	1 cut(s)	779
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	2 cut(s)	460, 1376
XhoI	CTCGAG	1 cut(s)	1260
XspI	CTAG	3 cut(s)	744, 1131, 1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.