Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011432

Physical Location & Seq

Genomic Coordinates Forward (+)

15604383 .. 15605137

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTCAAGCGGCTGCTGAATGATTTGGAGGTTCGGCAGGTGATGAAAGCCGAAAAGTTTTGTGAAGCAAATCAGCTACCGCCGAATTACATTTGTGTGAATGGACAGCCTCTTTGTCATGAGGAGCTTGTTGTGTTACAGACCTGCTCAAACCCCCCGAAGAAGCTAAAACCAGGAAACTATTGGTATGATAAAGTTTCTGGACTTTGGGGAAAGGAAGGACAGAAGCCTGCGAAGGTAATCAGTCCCCATCTTAGTGTTGGGGGTCCCATCAAGGCAAATGCTAGTAATGGAAACACGCAGGTTTTTATCAATGGCCGGGAAATTACCAAAGTTGAGCTTCAGCAACAGGAGGGAGAGTGGGTGCTTAAGGGTAAGTTTCATGGATCATTTTCTTCTGTATCTTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

137

Amino Acids

15.29

Weight (kDa)

9.08

Isoelectric Point (pI)

23.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43980
fragaria_vesca	FvH4_2g15270 FvH4_2g15270
malus_domestica	MD10G1008600.v1.1
prunus_persica	Prupe.8G012400_v2.0.a1 Prupe.8G012400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0277991 RchiOBHm_Chr6g0278001
rosa_laevigata	RLG00000013249
rosa_multiflora	Rmu_co8471873.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190600
rosa_rugosa	Rorug06G0113900 Rorug06G0114000
rosa_samantha	Rh2CG626400 Rh6AG223600 Rh6AG223700 Rh6BG227800 Rh6CG230300 Rh6DG221100
rosa_wichuraiana	Rw6G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	3 cut(s)	28, 152, 292
AciI	CCGC	2 cut(s)	10, 80
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	326
AflII	CTTAAG	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	76, 127, 166, 340
AluI	AGCT	4 cut(s)	76, 127, 166, 340
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	13
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	266
BccI	CCATC	2 cut(s)	258, 278
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	320
BfaI	CTAG	1 cut(s)	285
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	3 cut(s)	28, 152, 292
BisI	GCNGC	2 cut(s)	11, 14
BlsI	GCNGC	2 cut(s)	12, 15
Bme1390I	CCNGG	2 cut(s)	174, 320
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	267, 268
BmrFI	CCNGG	2 cut(s)	174, 320
BpuMI	CCSGG	1 cut(s)	320
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 348, 374, 378
BseBI	CCWGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	319
BslFI	GGGAC	2 cut(s)	231, 252
BsmFI	GGGAC	2 cut(s)	231, 252
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	386
BspACI	CCGC	2 cut(s)	10, 80
BspANI	GGCC	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	267, 268
BspMI	ACCTGC	3 cut(s)	28, 152, 292
BspPI	GGATC	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	368
BssMI	GATC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	254
BstKTI	GATC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	172, 318
BsuRI	GGCC	1 cut(s)	318
BveI	ACCTGC	3 cut(s)	28, 152, 292
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	266
CviAII	CATG	2 cut(s)	119, 383
CviJI	RGCY	9 cut(s)	13, 50, 76, 109, 127, 166, 229, 318, 340
CviKI_1	RGCY	9 cut(s)	13, 50, 76, 109, 127, 166, 229, 318, 340
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	122, 386
FaiI	YATR	3 cut(s)	120, 189, 384
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	2 cut(s)	231, 252
FatI	CATG	2 cut(s)	118, 382
Fnu4HI	GCNGC	2 cut(s)	11, 14
Fsp4HI	GCNGC	2 cut(s)	11, 14
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	2 cut(s)	11, 14
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	2 cut(s)	122, 386
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	119, 201
HpyAV	CCTTC	2 cut(s)	212, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	122, 386
KflI	GGGWCCC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	9 cut(s)	23, 157, 159, 186, 186, 243, 287, 332, 335
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	2 cut(s)	172, 387
MluCI	AATT	2 cut(s)	85, 324
MnlI	CCTC	4 cut(s)	22, 115, 120, 346
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	2 cut(s)	95, 255
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	2 cut(s)	174, 320
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	2 cut(s)	122, 386
NlaIV	GGNNCC	2 cut(s)	267, 268
PagI	TCATGA	1 cut(s)	118
PaqCI	CACCTGC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	12, 15
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	267, 268
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
RseI	CAYNNNNRTG	2 cut(s)	95, 255
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	11, 14
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	174, 320
SetI	ASST	9 cut(s)	33, 42, 78, 129, 146, 168, 240, 306, 342
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	95, 255
SmlI	CTYRAG	2 cut(s)	5, 368
SmoI	CTYRAG	2 cut(s)	5, 368
Sse9I	AATT	2 cut(s)	85, 324
SsiI	CCGC	2 cut(s)	10, 80
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	172, 318
TasI	AATT	2 cut(s)	85, 324
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	59, 371
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	2 cut(s)	180, 257
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.