AT1G44446

chlorophyllide a oxygenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
16848308 .. 16851271
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44446.2

Sequence Viewer

Length: 1611 bp
ATGAACGCCGCCGTGTTTAGTCCTTCTGCTTTATCTCTCCCTATCTCCTTCTCTAAAACCCGATCCTCTTTTCTCTCCAGAAAGAAGGGCGTGAAAGGAGAATTTAGGGTATTTGCTGTGTTTGGTGATGAGAGTGGATTAGTTGAGAAGAAGAGTCAATGGAGACCTTTGTTTGATGTGGAGGATCCTAGATCAAAAGCTCCTCCTTATAAAGGAAAGTTTTTAGATGTTAATCAAGCTATTGAAGTTGCTAGGTTTGATATTCAATACTTGGATTGGCGTGCTCGTCAAGATCTTCTTACCATTATGATTCTTCATGACAAGGTTGTTGATGTACTTAATCCTCTAGCTCGTGAGTACAAGTCCATCGGTACAGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAATTATCGAAAGCACACCAACAGGTTCATATATCTGAAGCAAGGGTTTCGACTGCTTTAGACAAGTTAGCCCACATGGAAGAATTGGTTAATGATAGGTTGTTACCTGGCAGAGTTGTAACGGAATTAGATAAACCCTCCTCTTCAACCACTGCTTCTGCTGTCGAGTTAGATAGGGAAAAGACAAACACGGGTGCGAAAAGCTTGAATGTTTCTGGTCCGGTTCCGCCTTATAGTCCACACTTGAAGAATTTTTGGTATCCCGTTGCTTTCACTGCAGATCTCAAGCATGATACAATGGTACCAATTGAATGCTTTGAACAACCATGGGTTATCTTTAGGGGTGAAGACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGGATGGGAATACTCAACCGATGGAGAATGTAAGAAGATGCCGTCTACAAAGTTACTGAAGGTGAAGATCAAATCATTACCTTGTCTTGAACAAGAAGGTATGATCTGGATTTGGCCCGGTGATGAGCCACCTGCACCTATACTTCCTTCTTTACAGCCTCCATCAGGGTTTTTAATTCATGCTGAGCTTGTAATGGACCTCCCGGTGGAACACGGTTTACTTCTAGATAATCTCTTGGATCTTGCTCATGCCCCATTCACTCATACATCCACTTTTGCAAAAGGCTGGAGTGTCCCAAGTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACAATCGGGATATCAAAACCCGGGAAACTAGAAGGCAAAAGCACACAGCAGTGTGCAACACATCTTCATCAACTCCATGTCTGTTTACCTTCTTCTAAAAACAAGACAAGACTTCTATACCGAATGTCACTAGACTTTGCTCCTATATTAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAGGTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAGAACGGATGTTAAACGGAGCAAACATATGGAATTTACCAGTTGCTTATGACAAGCTCGGAGTTCGGTATAGACTATGGAGGAACGCAGTAGATCGTGGCGATGATAAACTACCTTTCTCCGGCTAA

Protein Analysis

536

Amino Acids

60.33

Weight (kDa)

7.96

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske PF00355 221 - 303 8.1e-26 Rieske [2Fe-2S] domain
PaO PF08417 408 - 484 1.4e-11 Pheophorbide a oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AarI CACCTGC 1 cut(s) 991
Acc16I TGCGCA 1 cut(s) 789
Acc36I ACCTGC 1 cut(s) 991
Acc65I GGTACC 1 cut(s) 706
AccB1I GGYRCC 1 cut(s) 706
AccI GTMKAC 1 cut(s) 896
AciI CCGC 2 cut(s) 9, 632
AclWI GGATC 6 cut(s) 57, 179, 192, 1098, 1193, 1206
AcsI RAATTY 4 cut(s) 101, 655, 1220, 1516
AcuI CTGAAG 2 cut(s) 462, 929
AfaI GTAC 6 cut(s) 336, 359, 373, 708, 774, 848
AfiI CCNNNNNNNGG 8 cut(s) 212, 851, 856, 1016, 1057, 1153, 1178, 1604
AflIII ACRYGT 1 cut(s) 782
AgsI TTSAA 9 cut(s) 245, 266, 552, 613, 652, 716, 725, 839, 941
AjnI CCWGG 2 cut(s) 511, 763
AleI CACNNNNGTG 1 cut(s) 1297
AluBI AGCT 7 cut(s) 200, 239, 350, 392, 609, 1039, 1540
AluI AGCT 7 cut(s) 200, 239, 350, 392, 609, 1039, 1540
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 3 cut(s) 157, 1187, 1423
AlwI GGATC 6 cut(s) 57, 179, 192, 1098, 1193, 1206
Ama87I CYCGRG 2 cut(s) 1177, 1268
AoxI GGCC 1 cut(s) 965
ApoI RAATTY 4 cut(s) 101, 655, 1220, 1516
Asp718I GGTACC 1 cut(s) 706
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 3 cut(s) 623, 966, 1048
AsuC2I CCSGG 4 cut(s) 969, 1055, 1269, 1270
AsuHPI GGTGA 5 cut(s) 137, 761, 925, 983, 1168
AvaI CYCGRG 2 cut(s) 1177, 1268
AvaII GGWCC 2 cut(s) 623, 1048
BaeI ACNNNNGTAYC 4 cut(s) 690, 690, 723, 723
BamHI GGATCC 2 cut(s) 184, 1198
BanI GGYRCC 1 cut(s) 706
BauI CACGAG 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 286
BccI CCATC 4 cut(s) 374, 849, 866, 1021
BceAI ACGGC 2 cut(s) 877, 1481
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BciT130I CCWGG 2 cut(s) 513, 765
BciVI GTATCC 2 cut(s) 675, 1184
BcnI CCSGG 4 cut(s) 969, 1055, 1269, 1270
BcoDI GTCTC 3 cut(s) 157, 1187, 1423
BfaI CTAG 8 cut(s) 189, 252, 347, 389, 1076, 1277, 1379, 1469
BfmI CTRYAG 1 cut(s) 681
BfuAI ACCTGC 1 cut(s) 991
BfuI GTATCC 2 cut(s) 675, 1184
BglII AGATCT 3 cut(s) 292, 685, 1459
BisI GCNGC 1 cut(s) 9
BlpI GCTNAGC 1 cut(s) 1035
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 6 cut(s) 513, 765, 969, 1055, 1269, 1270
Bme18I GGWCC 2 cut(s) 623, 1048
BmeT110I CYCGRG 2 cut(s) 1177, 1268
BmgT120I GGNCC 3 cut(s) 623, 966, 1048
BmiI GGNNCC 4 cut(s) 186, 630, 708, 1200
BmrFI CCNGG 6 cut(s) 513, 765, 969, 1055, 1269, 1270
BmrI ACTGGG 1 cut(s) 1204
BmsI GCATC 1 cut(s) 879
BmuI ACTGGG 1 cut(s) 1204
BpiI GAAGAC 1 cut(s) 759
BpmI CTGGAG 2 cut(s) 61, 1159
Bpu1102I GCTNAGC 1 cut(s) 1035
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 4 cut(s) 969, 1055, 1269, 1270
Bsa29I ATCGAT 1 cut(s) 1212
BsaBI GATNNNNATC 2 cut(s) 231, 1203
BsaI GGTCTC 2 cut(s) 157, 1187
BsaJI CCNNGG 5 cut(s) 731, 850, 1176, 1186, 1268
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 8 cut(s) 212, 851, 856, 1016, 1057, 1153, 1178, 1604
Bse1I ACTGG 2 cut(s) 1199, 1523
Bse8I GATNNNNATC 2 cut(s) 231, 1203
BseBI CCWGG 2 cut(s) 513, 765
BseCI ATCGAT 1 cut(s) 1212
BseDI CCNNGG 5 cut(s) 731, 850, 1176, 1186, 1268
BseGI GGATG 4 cut(s) 773, 860, 1118, 1497
BseJI GATNNNNATC 2 cut(s) 231, 1203
BseLI CCNNNNNNNGG 8 cut(s) 212, 851, 856, 1016, 1057, 1153, 1178, 1604
BseMII CTCAG 1 cut(s) 1026
BseNI ACTGG 2 cut(s) 1199, 1523
BseRI GAGGAG 2 cut(s) 192, 535
BsgI GTGCAG 1 cut(s) 969
BshFI GGCC 1 cut(s) 967
BshNI GGYRCC 1 cut(s) 706
BshVI ATCGAT 1 cut(s) 1212
BsiHKAI GWGCWC 1 cut(s) 286
BsiHKCI CYCGRG 2 cut(s) 1177, 1268
BsiSI CCGG 5 cut(s) 626, 969, 1055, 1269, 1605
BslFI GGGAC 2 cut(s) 843, 1130
BslI CCNNNNNNNGG 8 cut(s) 212, 851, 856, 1016, 1057, 1153, 1178, 1604
BsmAI GTCTC 3 cut(s) 157, 1187, 1423
BsmFI GGGAC 2 cut(s) 843, 1130
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 1 cut(s) 967
Bso31I GGTCTC 2 cut(s) 157, 1187
BsoBI CYCGRG 2 cut(s) 1177, 1268
Bsp1286I GDGCHC 1 cut(s) 286
Bsp1720I GCTNAGC 1 cut(s) 1035
Bsp19I CCATGG 2 cut(s) 731, 850
BspACI CCGC 2 cut(s) 9, 632
BspANI GGCC 1 cut(s) 967
BspCNI CTCAG 1 cut(s) 1027
BspDI ATCGAT 1 cut(s) 1212
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 4 cut(s) 186, 630, 708, 1200
BspMAI CTGCAG 1 cut(s) 685
BspMI ACCTGC 1 cut(s) 991
BspPI GGATC 6 cut(s) 57, 179, 192, 1098, 1193, 1206
BspT107I GGYRCC 1 cut(s) 706
BspTNI GGTCTC 2 cut(s) 157, 1187
BsrI ACTGG 2 cut(s) 1199, 1523
BssECI CCNNGG 5 cut(s) 731, 850, 1176, 1186, 1268
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 3 cut(s) 731, 850, 1186
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 2 cut(s) 513, 765
Bst4CI ACNGT 4 cut(s) 376, 820, 1067, 1233
Bst6I CTCTTC 2 cut(s) 146, 553
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 1035
BstDSI CCRYGG 2 cut(s) 731, 850
BstENI CCTNNNNNAGG 2 cut(s) 210, 1014
BstF5I GGATG 4 cut(s) 773, 860, 1118, 1497
BstHHI GCGC 1 cut(s) 790
BstMAI GTCTC 3 cut(s) 157, 1187, 1423
BstMWI GCNNNNNNNGC 2 cut(s) 680, 794
BstNI CCWGG 2 cut(s) 513, 765
BstNSI RCATGY 2 cut(s) 786, 801
BstSCI CCNGG 6 cut(s) 511, 763, 967, 1053, 1267, 1268
BstSFI CTRYAG 1 cut(s) 681
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 6 cut(s) 184, 292, 685, 1090, 1198, 1459
BstYI RGATCY 6 cut(s) 184, 292, 685, 1090, 1198, 1459
Bsu15I ATCGAT 1 cut(s) 1212
BsuI GTATCC 2 cut(s) 675, 1184
BsuRI GGCC 1 cut(s) 967
BsuTUI ATCGAT 1 cut(s) 1212
BtgI CCRYGG 2 cut(s) 731, 850
BtgZI GCGATG 1 cut(s) 1599
BtsCI GGATG 4 cut(s) 773, 860, 1118, 1497
BtsI GCAGTG 3 cut(s) 555, 678, 1304
BtsIMutI CAGTG 5 cut(s) 381, 555, 678, 825, 1304
BveI ACCTGC 1 cut(s) 991
Cac8I GCNNGC 1 cut(s) 282
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 3 cut(s) 623, 966, 1048
Cfr9I CCCGGG 1 cut(s) 1268
ClaI ATCGAT 1 cut(s) 1212
Csp6I GTAC 6 cut(s) 335, 358, 372, 707, 773, 847
CviQI GTAC 6 cut(s) 335, 358, 372, 707, 773, 847
DdeI CTNAG 1 cut(s) 1035
DraI TTTAAA 1 cut(s) 1225
Eam1104I CTCTTC 2 cut(s) 146, 553
EarI CTCTTC 2 cut(s) 146, 553
EciI GGCGGA 1 cut(s) 621
Eco130I CCWWGG 3 cut(s) 731, 850, 1186
Eco31I GGTCTC 2 cut(s) 157, 1187
Eco32I GATATC 1 cut(s) 1260
Eco47I GGWCC 2 cut(s) 623, 1048
Eco57I CTGAAG 2 cut(s) 462, 929
Eco88I CYCGRG 2 cut(s) 1177, 1268
EcoNI CCTNNNNNAGG 2 cut(s) 210, 1014
EcoRII CCWGG 2 cut(s) 511, 763
EcoRV GATATC 1 cut(s) 1260
EcoT14I CCWWGG 3 cut(s) 731, 850, 1186
ErhI CCWWGG 3 cut(s) 731, 850, 1186
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 2 cut(s) 843, 1130
FauNDI CATATG 1 cut(s) 1511
FblI GTMKAC 1 cut(s) 896
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 4 cut(s) 780, 867, 1105, 1504
Fsp4HI GCNGC 1 cut(s) 9
FspAI RTGCGCAY 1 cut(s) 789
FspBI CTAG 8 cut(s) 189, 252, 347, 389, 1076, 1277, 1379, 1469
FspI TGCGCA 1 cut(s) 789
GlaI GCGC 1 cut(s) 789
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 2 cut(s) 61, 1159
HaeIII GGCC 1 cut(s) 967
HapII CCGG 5 cut(s) 626, 969, 1055, 1269, 1605
HhaI GCGC 1 cut(s) 790
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HindIII AAGCTT 1 cut(s) 607
HinfI GANTC 3 cut(s) 154, 310, 1402
HpaII CCGG 5 cut(s) 626, 969, 1055, 1269, 1605
HphI GGTGA 5 cut(s) 137, 761, 925, 983, 1168
Hpy166II GTNNAC 6 cut(s) 644, 773, 823, 897, 1070, 1334
Hpy188I TCNGA 2 cut(s) 442, 1544
Hpy188III TCNNGA 9 cut(s) 78, 290, 317, 353, 806, 938, 958, 1076, 1255
Hpy8I GTNNAC 6 cut(s) 644, 773, 823, 897, 1070, 1334
HpyAV CCTTC 8 cut(s) 33, 58, 79, 904, 941, 1008, 1274, 1347
HpyCH4III ACNGT 4 cut(s) 376, 820, 1067, 1233
HpyCH4IV ACGT 1 cut(s) 832
HpyCH4V TGCA 5 cut(s) 400, 683, 986, 1130, 1304
HpyF10VI GCNNNNNNNGC 2 cut(s) 680, 794
HpyF3I CTNAG 1 cut(s) 1035
HpySE526I ACGT 1 cut(s) 832
HspAI GCGC 1 cut(s) 788
KpnI GGTACC 1 cut(s) 710
LmnI GCTCC 3 cut(s) 205, 1393, 1502
LweI GCATC 1 cut(s) 879
MaeI CTAG 8 cut(s) 189, 252, 347, 389, 1076, 1277, 1379, 1469
MaeII ACGT 1 cut(s) 832
MaeIII GTNAC 4 cut(s) 507, 523, 903, 1374
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 6 cut(s) 184, 292, 685, 1090, 1198, 1459
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 9 cut(s) 101, 407, 488, 530, 655, 711, 1026, 1220, 1516
MlyI GAGTC 1 cut(s) 163
MseI TTAA 9 cut(s) 231, 339, 495, 1025, 1166, 1224, 1397, 1451, 1496
MslI CAYNNNNRTG 1 cut(s) 1297
MspI CCGG 5 cut(s) 626, 969, 1055, 1269, 1605
MspR9I CCNGG 6 cut(s) 513, 765, 969, 1055, 1269, 1270
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 2 cut(s) 513, 765
MwoI GCNNNNNNNGC 2 cut(s) 680, 794
NciI CCSGG 4 cut(s) 969, 1055, 1269, 1270
NcoI CCATGG 2 cut(s) 731, 850
NdeI CATATG 1 cut(s) 1511
NlaIV GGNNCC 4 cut(s) 186, 630, 708, 1200
NmuCI GTSAC 1 cut(s) 1374
NsbI TGCGCA 1 cut(s) 789
NspI RCATGY 2 cut(s) 786, 801
OliI CACNNNNGTG 1 cut(s) 1297
PagI TCATGA 1 cut(s) 316
PaqCI CACCTGC 1 cut(s) 991
PciI ACATGT 1 cut(s) 782
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 2 cut(s) 310, 1402
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PscI ACATGT 1 cut(s) 782
PsiI TTATAA 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 511, 763
PspGI CCWGG 2 cut(s) 511, 763
PspN4I GGNNCC 4 cut(s) 186, 630, 708, 1200
PspPI GGNCC 3 cut(s) 623, 966, 1048
PsrI GAACNNNNNNTAC 2 cut(s) 1053, 1085
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 6 cut(s) 184, 292, 685, 1090, 1198, 1459
RsaI GTAC 6 cut(s) 336, 359, 373, 708, 774, 848
RsaNI GTAC 6 cut(s) 335, 358, 372, 707, 773, 847
RseI CAYNNNNRTG 1 cut(s) 1297
SaqAI TTAA 9 cut(s) 231, 339, 495, 1025, 1166, 1224, 1397, 1451, 1496
SatI GCNGC 1 cut(s) 9
Sau96I GGNCC 3 cut(s) 623, 966, 1048
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 6 cut(s) 513, 765, 969, 1055, 1269, 1270
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 1 cut(s) 879
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 2 cut(s) 623, 1048
SmaI CCCGGG 1 cut(s) 1270
SmiMI CAYNNNNRTG 1 cut(s) 1297
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 9 cut(s) 101, 407, 488, 530, 655, 711, 1026, 1220, 1516
SsiI CCGC 2 cut(s) 9, 632
SspMI CTAG 8 cut(s) 189, 252, 347, 389, 1076, 1277, 1379, 1469
StyD4I CCNGG 6 cut(s) 511, 763, 967, 1053, 1267, 1268
StyI CCWWGG 3 cut(s) 731, 850, 1186
TaaI ACNGT 4 cut(s) 376, 820, 1067, 1233
TaiI ACGT 1 cut(s) 835
TaqI TCGA 5 cut(s) 413, 455, 570, 1212, 1247
TasI AATT 9 cut(s) 101, 407, 488, 530, 655, 711, 1026, 1220, 1516
TatI WGTACW 2 cut(s) 334, 357
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 310, 1402
Tru1I TTAA 9 cut(s) 231, 339, 495, 1025, 1166, 1224, 1397, 1451, 1496
Tru9I TTAA 9 cut(s) 231, 339, 495, 1025, 1166, 1224, 1397, 1451, 1496
TscAI CASTG 5 cut(s) 381, 562, 685, 825, 1304
TseFI GTSAC 1 cut(s) 1374
Tsp45I GTSAC 1 cut(s) 1374
TspDTI ATGAA 6 cut(s) 17, 305, 422, 1019, 1304, 1402
TspGWI ACGGA 5 cut(s) 542, 790, 834, 1504, 1515
TspMI CCCGGG 1 cut(s) 1268
TspRI CASTG 5 cut(s) 381, 562, 685, 825, 1304
VpaK11BI GGWCC 2 cut(s) 623, 1048
XagI CCTNNNNNAGG 2 cut(s) 210, 1014
XapI RAATTY 4 cut(s) 101, 655, 1220, 1516
XbaI TCTAGA 1 cut(s) 1075
XceI RCATGY 2 cut(s) 786, 801
XmaI CCCGGG 1 cut(s) 1268
XmiI GTMKAC 1 cut(s) 896
XspI CTAG 8 cut(s) 189, 252, 347, 389, 1076, 1277, 1379, 1469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.