pycom08g14010

Chlorophyllide a oxygenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
13039687 .. 13042245
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14010.6

Sequence Viewer

Length: 1260 bp
ATGAACTGCATCCACGTGGCGCGTCGTGGGAGGAGAACTGAGATCGCGGGCTACAGGAGCCACTTATCAACAAAACTTTCCAACAATAAATTTGAAACACCAATATCTCTTACGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTATGCCATGAGTCTGTCAGCTTCAAACGCCATGACCATTGTAGCCACAGCTGCAGCTCTATCTCTGCCAATATCTTTTTGCAGAACAACCAAGCTTAGCACCAGGAAGGGTGTGAAAGGAGGATTTCGAGTATTTGCTGTATTCGGAGAGCAGTCAGAGATAGAGAAGAAGAATGCTTGGAGCACACTCTTTGATGTGGAGGATCCGAGGTCGAAATTTCCACAATCTAAAGGCAAGTTTCTGGATGCAAACCAGGCCTTGGAAGTTGCTAGATTTGATATACAGTATTGTGATTGGCGAGCTCGACAAGATGTGCTCGCAATCATGCTCCTCCATGAAAAGGTTGTGGACGTTCTAAATCCTCTAGCCCGAGAATATAAGTCTATAGGTACTGTCAAAAAGGAGCTCGCGGAGTTGCAAGAAGAACTAGGAAAGGCTCATAGACAGGTTCATATATCGGAAGCAAGGGTTTCCACAGCGTTGGATAAATTGGCTTACATGGAAGAATTAGTGAATGATAAGCTGTTACAAGATAGAGCAACTACATCTTCCGAGGAAGCATCCCCTTCTCCCAGCACTTCTACGCAATCTCTAGATTCTGTAAAAAGGAAGCCTCCTCGAAAATGCTTGAACGTTTCAGGTCCAGTTCAATCCTACCATCCCCGATTGAAGAATTTTTGGTATCCTGTTGCCTTCACCATTGACCTGAAAGATGATACCATGGTTCCACTTGATTGTTTTGAGGAACCATGGGTTCTCTTTCGTGGAAAAGATGGGAAACCTGGATGTGTGCAGAATACTTGTGCGCACAGAGCTTGCCCTCTTGACCTCGGCTCAGTAAATGAGGGCCGTATCACGTGCCCTTACCATGGGTGGGAGTATTCAACCGATGGAACATGTGAAAAAATGCCATCTACGCGATTACACAAAGTGAAGATTAAGTCATTGCCATGTTTCGAGAAAGATGGAATGCTGTGGATTTGGCCCGGTGCTGAAGATCGATCCTCCATCAGCCACTCTTCCTTCTTTACAACCTCCTGCAGGATTTCAAATCCATGCCGAGCTCGTCATAGAACTCCCAGTGGAACATGGGCTGCTTCTTGA

Protein Analysis

420

Amino Acids

46.94

Weight (kDa)

9.07

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 963
AccB7I CCANNNNNTGG 1 cut(s) 415
AccII CGCG 4 cut(s) 22, 47, 566, 1075
AciI CCGC 2 cut(s) 47, 566
AclI AACGTT 1 cut(s) 789
AclWI GGATC 3 cut(s) 353, 366, 1152
AcsI RAATTY 3 cut(s) 89, 371, 829
AcuI CTGAAG 1 cut(s) 1170
AcvI CACGTG 2 cut(s) 16, 1014
AdeI CACNNNGTG 1 cut(s) 1087
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 5 cut(s) 415, 496, 1025, 1030, 1197
AflIII ACRYGT 1 cut(s) 1052
AgsI TTSAA 7 cut(s) 95, 180, 787, 806, 826, 1041, 1206
AjnI CCWGG 3 cut(s) 257, 408, 937
AluBI AGCT 9 cut(s) 176, 206, 212, 250, 458, 562, 679, 971, 1220
AluI AGCT 9 cut(s) 176, 206, 212, 250, 458, 562, 679, 971, 1220
Alw21I GWGCWC 5 cut(s) 341, 460, 474, 564, 1222
AlwI GGATC 3 cut(s) 353, 366, 1152
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 3 cut(s) 411, 1003, 1139
ApeKI GCWGC 3 cut(s) 206, 209, 1250
ApoI RAATTY 3 cut(s) 89, 371, 829
AspLEI GCGC 2 cut(s) 22, 964
AspS9I GGNCC 3 cut(s) 797, 1003, 1140
AsuC2I CCSGG 1 cut(s) 1143
AsuHPI GGTGA 1 cut(s) 844
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 1 cut(s) 797
BaeGI GKGCMC 1 cut(s) 1019
BaeI ACNNNNGTAYC 2 cut(s) 864, 897
BamHI GGATCC 1 cut(s) 358
BanII GRGCYC 3 cut(s) 460, 564, 1222
BbrPI CACGTG 2 cut(s) 16, 1014
Bbv12I GWGCWC 5 cut(s) 341, 460, 474, 564, 1222
BbvI GCAGC 3 cut(s) 193, 221, 1237
BccI CCATC 6 cut(s) 822, 923, 1040, 1075, 1115, 1172
BceAI ACGGC 1 cut(s) 990
BciT130I CCWGG 3 cut(s) 259, 410, 939
BciVI GTATCC 1 cut(s) 849
BcnI CCSGG 1 cut(s) 1143
BfaI CTAG 4 cut(s) 426, 521, 584, 749
BfmI CTRYAG 4 cut(s) 52, 207, 540, 1195
BfuI GTATCC 1 cut(s) 849
BisI GCNGC 3 cut(s) 207, 210, 1251
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 3 cut(s) 208, 211, 1252
Bme1390I CCNGG 4 cut(s) 259, 410, 939, 1143
Bme18I GGWCC 1 cut(s) 797
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 3 cut(s) 797, 1003, 1140
BmiI GGNNCC 4 cut(s) 59, 360, 882, 903
BmrFI CCNGG 4 cut(s) 259, 410, 939, 1143
BmrI ACTGGG 1 cut(s) 1230
BmsI GCATC 3 cut(s) 18, 391, 725
BmuI ACTGGG 1 cut(s) 1230
Bpu1102I GCTNAGC 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 1143
Bsa29I ATCGAT 1 cut(s) 1156
BsaAI YACGTR 2 cut(s) 16, 1014
BsaJI CCNNGG 7 cut(s) 362, 414, 708, 876, 905, 985, 1024
Bsc4I CCNNNNNNNGG 5 cut(s) 415, 496, 1025, 1030, 1197
Bse1I ACTGG 2 cut(s) 800, 1236
Bse3DI GCAATG 1 cut(s) 1100
BseBI CCWGG 3 cut(s) 259, 410, 939
BseCI ATCGAT 1 cut(s) 1156
BseDI CCNNGG 7 cut(s) 362, 414, 708, 876, 905, 985, 1024
BseGI GGATG 5 cut(s) 9, 406, 716, 814, 947
BseLI CCNNNNNNNGG 5 cut(s) 415, 496, 1025, 1030, 1197
BseMI GCAATG 1 cut(s) 1100
BseMII CTCAG 2 cut(s) 30, 1005
BseNI ACTGG 2 cut(s) 800, 1236
BseRI GAGGAG 3 cut(s) 46, 476, 762
BseSI GKGCMC 1 cut(s) 1019
BseXI GCAGC 3 cut(s) 193, 221, 1237
BseYI CCCAGC 1 cut(s) 728
BsgI GTGCAG 1 cut(s) 968
Bsh1236I CGCG 4 cut(s) 22, 47, 566, 1075
BshFI GGCC 3 cut(s) 413, 1005, 1141
BshVI ATCGAT 1 cut(s) 1156
BsiHKAI GWGCWC 5 cut(s) 341, 460, 474, 564, 1222
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 1 cut(s) 1143
BslI CCNNNNNNNGG 5 cut(s) 415, 496, 1025, 1030, 1197
BsmI GAATGC 2 cut(s) 334, 1131
BsnI GGCC 3 cut(s) 413, 1005, 1141
BsoBI CYCGRG 1 cut(s) 525
Bsp1286I GDGCHC 6 cut(s) 341, 460, 474, 564, 1019, 1222
Bsp143I GATC 4 cut(s) 42, 358, 1153, 1157
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp19I CCATGG 3 cut(s) 876, 905, 1024
BspACI CCGC 2 cut(s) 47, 566
BspANI GGCC 3 cut(s) 413, 1005, 1141
BspCNI CTCAG 2 cut(s) 31, 1004
BspDI ATCGAT 1 cut(s) 1156
BspFNI CGCG 4 cut(s) 22, 47, 566, 1075
BspLI GGNNCC 4 cut(s) 59, 360, 882, 903
BspMAI CTGCAG 2 cut(s) 211, 1199
BspPI GGATC 3 cut(s) 353, 366, 1152
BsrDI GCAATG 1 cut(s) 1100
BsrI ACTGG 2 cut(s) 800, 1236
BssECI CCNNGG 7 cut(s) 362, 414, 708, 876, 905, 985, 1024
BssMI GATC 4 cut(s) 42, 358, 1153, 1157
BssT1I CCWWGG 4 cut(s) 414, 876, 905, 1024
Bst2UI CCWGG 3 cut(s) 259, 410, 939
Bst4CI ACNGT 2 cut(s) 441, 550
Bst6I CTCTTC 1 cut(s) 1180
BstBAI YACGTR 2 cut(s) 16, 1014
BstC8I GCNNGC 5 cut(s) 49, 456, 474, 564, 973
BstDEI CTNAG 3 cut(s) 39, 251, 991
BstDSI CCRYGG 3 cut(s) 876, 905, 1024
BstENI CCTNNNNNAGG 1 cut(s) 1195
BstF5I GGATG 5 cut(s) 9, 406, 716, 814, 947
BstFNI CGCG 4 cut(s) 22, 47, 566, 1075
BstHHI GCGC 2 cut(s) 22, 964
BstKTI GATC 4 cut(s) 45, 361, 1156, 1160
BstMBI GATC 4 cut(s) 42, 358, 1153, 1157
BstMWI GCNNNNNNNGC 6 cut(s) 57, 182, 206, 410, 968, 1072
BstNI CCWGG 3 cut(s) 259, 410, 939
BstNSI RCATGY 1 cut(s) 1056
BstSCI CCNGG 4 cut(s) 257, 408, 937, 1141
BstSFI CTRYAG 4 cut(s) 52, 207, 540, 1195
BstSLI GKGCMC 1 cut(s) 1019
BstUI CGCG 4 cut(s) 22, 47, 566, 1075
BstV1I GCAGC 3 cut(s) 193, 221, 1237
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 1 cut(s) 358
Bsu15I ATCGAT 1 cut(s) 1156
BsuI GTATCC 1 cut(s) 849
BsuRI GGCC 3 cut(s) 413, 1005, 1141
BsuTUI ATCGAT 1 cut(s) 1156
BtgI CCRYGG 3 cut(s) 876, 905, 1024
BtsCI GGATG 5 cut(s) 9, 406, 716, 814, 947
BtsIMutI CAGTG 1 cut(s) 1243
Cac8I GCNNGC 5 cut(s) 49, 456, 474, 564, 973
CfoI GCGC 2 cut(s) 22, 964
Cfr13I GGNCC 3 cut(s) 797, 1003, 1140
ClaI ATCGAT 1 cut(s) 1156
CseI GACGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 546
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 3 cut(s) 39, 251, 991
DpnI GATC 4 cut(s) 44, 360, 1155, 1159
DpnII GATC 4 cut(s) 42, 358, 1153, 1157
DraIII CACNNNGTG 1 cut(s) 1087
Eam1104I CTCTTC 1 cut(s) 1180
EarI CTCTTC 1 cut(s) 1180
Ecl136II GAGCTC 3 cut(s) 458, 562, 1220
Eco130I CCWWGG 4 cut(s) 414, 876, 905, 1024
Eco147I AGGCCT 1 cut(s) 413
Eco24I GRGCYC 3 cut(s) 460, 564, 1222
Eco47I GGWCC 1 cut(s) 797
Eco53kI GAGCTC 3 cut(s) 458, 562, 1220
Eco57I CTGAAG 1 cut(s) 1170
Eco72I CACGTG 2 cut(s) 16, 1014
Eco88I CYCGRG 1 cut(s) 525
EcoICRI GAGCTC 3 cut(s) 458, 562, 1220
EcoNI CCTNNNNNAGG 1 cut(s) 1195
EcoRII CCWGG 3 cut(s) 257, 408, 937
EcoT14I CCWWGG 4 cut(s) 414, 876, 905, 1024
EcoT38I GRGCYC 3 cut(s) 460, 564, 1222
ErhI CCWWGG 4 cut(s) 414, 876, 905, 1024
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 207, 210, 1251
FokI GGATG 4 cut(s) 413, 703, 801, 954
FriOI GRGCYC 3 cut(s) 460, 564, 1222
Fsp4HI GCNGC 3 cut(s) 207, 210, 1251
FspAI RTGCGCAY 1 cut(s) 963
FspBI CTAG 4 cut(s) 426, 521, 584, 749
FspI TGCGCA 1 cut(s) 963
GlaI GCGC 2 cut(s) 21, 963
GluI GCNGC 3 cut(s) 207, 210, 1251
GsaI CCCAGC 1 cut(s) 732
HaeIII GGCC 3 cut(s) 413, 1005, 1141
HapII CCGG 1 cut(s) 1143
HgaI GACGC 1 cut(s) 11
HhaI GCGC 2 cut(s) 22, 964
Hin6I GCGC 2 cut(s) 20, 962
HinP1I GCGC 2 cut(s) 20, 962
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 2 cut(s) 166, 752
HpaII CCGG 1 cut(s) 1143
HphI GGTGA 1 cut(s) 844
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 5 cut(s) 302, 313, 363, 616, 709
Hpy188III TCNNGA 5 cut(s) 398, 749, 980, 1114, 1257
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 256, 732, 859, 1189
HpyCH4III ACNGT 2 cut(s) 441, 550
HpyCH4IV ACGT 5 cut(s) 15, 113, 507, 789, 1013
HpyCH4V TGCA 7 cut(s) 9, 209, 237, 404, 574, 949, 1197
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 182, 206, 410, 968, 1072
HpyF3I CTNAG 3 cut(s) 39, 251, 991
HpySE526I ACGT 5 cut(s) 15, 113, 507, 789, 1013
HspAI GCGC 2 cut(s) 20, 962
Kzo9I GATC 4 cut(s) 42, 358, 1153, 1157
LmnI GCTCC 4 cut(s) 57, 336, 489, 559
Lsp1109I GCAGC 3 cut(s) 193, 221, 1237
LweI GCATC 3 cut(s) 18, 391, 725
MaeI CTAG 4 cut(s) 426, 521, 584, 749
MaeII ACGT 5 cut(s) 15, 113, 507, 789, 1013
MaeIII GTNAC 1 cut(s) 681
MalI GATC 4 cut(s) 44, 360, 1155, 1159
MboI GATC 4 cut(s) 42, 358, 1153, 1157
MboII GAAGA 9 cut(s) 334, 337, 590, 671, 696, 838, 1102, 1163, 1167
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 6 cut(s) 341, 460, 474, 564, 1019, 1222
MluCI AATT 5 cut(s) 89, 371, 644, 662, 829
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 2 cut(s) 105, 618
MseI TTAA 1 cut(s) 1095
MslI CAYNNNNRTG 2 cut(s) 14, 1105
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 1143
MspR9I CCNGG 4 cut(s) 259, 410, 939, 1143
Mva1269I GAATGC 2 cut(s) 334, 1131
MvaI CCWGG 3 cut(s) 259, 410, 939
MvnI CGCG 4 cut(s) 22, 47, 566, 1075
MwoI GCNNNNNNNGC 6 cut(s) 57, 182, 206, 410, 968, 1072
NciI CCSGG 1 cut(s) 1143
NcoI CCATGG 3 cut(s) 876, 905, 1024
NdeII GATC 4 cut(s) 42, 358, 1153, 1157
NlaIV GGNNCC 4 cut(s) 59, 360, 882, 903
NmeAIII GCCGAG 2 cut(s) 966, 1241
NsbI TGCGCA 1 cut(s) 963
NspI RCATGY 1 cut(s) 1056
PceI AGGCCT 1 cut(s) 413
PciI ACATGT 1 cut(s) 1052
PctI GAATGC 2 cut(s) 334, 1131
PfeI GAWTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 415
PkrI GCNGC 3 cut(s) 208, 211, 1252
PleI GAGTC 1 cut(s) 174
PmaCI CACGTG 2 cut(s) 16, 1014
PmlI CACGTG 2 cut(s) 16, 1014
PpsI GAGTC 1 cut(s) 174
Ppu21I YACGTR 2 cut(s) 16, 1014
PscI ACATGT 1 cut(s) 1052
Psp124BI GAGCTC 3 cut(s) 460, 564, 1222
Psp1406I AACGTT 1 cut(s) 789
Psp6I CCWGG 3 cut(s) 257, 408, 937
PspCI CACGTG 2 cut(s) 16, 1014
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 3 cut(s) 257, 408, 937
PspN4I GGNNCC 4 cut(s) 59, 360, 882, 903
PspPI GGNCC 3 cut(s) 797, 1003, 1140
PstI CTGCAG 2 cut(s) 211, 1199
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
RseI CAYNNNNRTG 2 cut(s) 14, 1105
SacI GAGCTC 3 cut(s) 460, 564, 1222
SaqAI TTAA 1 cut(s) 1095
SatI GCNGC 3 cut(s) 207, 210, 1251
Sau3AI GATC 4 cut(s) 42, 358, 1153, 1157
Sau96I GGNCC 3 cut(s) 797, 1003, 1140
SbfI CCTGCAGG 1 cut(s) 1199
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 4 cut(s) 259, 410, 939, 1143
SdaI CCTGCAGG 1 cut(s) 1199
SduI GDGCHC 6 cut(s) 341, 460, 474, 564, 1019, 1222
SfaNI GCATC 3 cut(s) 18, 391, 725
SfcI CTRYAG 4 cut(s) 52, 207, 540, 1195
SinI GGWCC 1 cut(s) 797
SmiMI CAYNNNNRTG 2 cut(s) 14, 1105
Sse8387I CCTGCAGG 1 cut(s) 1199
Sse9I AATT 5 cut(s) 89, 371, 644, 662, 829
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 2 cut(s) 47, 566
SspMI CTAG 4 cut(s) 426, 521, 584, 749
SstI GAGCTC 3 cut(s) 460, 564, 1222
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 4 cut(s) 257, 408, 937, 1141
StyI CCWWGG 4 cut(s) 414, 876, 905, 1024
TaaI ACNGT 2 cut(s) 441, 550
TaiI ACGT 5 cut(s) 18, 116, 510, 792, 1016
TaqI TCGA 6 cut(s) 283, 368, 460, 775, 1113, 1156
TasI AATT 5 cut(s) 89, 371, 644, 662, 829
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 1 cut(s) 1095
Tru9I TTAA 1 cut(s) 1095
TscAI CASTG 1 cut(s) 1243
TseI GCWGC 3 cut(s) 206, 209, 1250
TspDTI ATGAA 3 cut(s) 17, 507, 596
TspRI CASTG 1 cut(s) 1243
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 797
XagI CCTNNNNNAGG 1 cut(s) 1195
XapI RAATTY 3 cut(s) 89, 371, 829
XbaI TCTAGA 1 cut(s) 748
XceI RCATGY 1 cut(s) 1056
XspI CTAG 4 cut(s) 426, 521, 584, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.