Rh6CG382400

Chlorophyllide a oxygenase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
56859129 .. 56863478
4350 bp
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UTR
Exon/CDS
Intron
Rh6CG382400.1

Sequence Viewer

Length: 1230 bp
ATGCTTACTTCTGTGCATTTAATCCATGAATACCGACAGGTTCATATCTCTGAAGCAAGAGTTTCTACTGCTTTAGATAAATTGGCTTTCATGGAAGAATTGGTGAATGATAAGCTGTTACAAGACGGGAACACTACTGATGCTGAGCAAGCAACCCCTTCTCCCAGTACTTCTACACAATCTTTGGATGCTGTAAAAAGGAGGAGGTCTCGGAAAGGCTTGAATGTTTCAGGTCCAGTTCAAACCTACCATCCTCGATTGAAGAATTTTTGGTACCCTGTTGCCTTCTCCACTAACCTTAAGGATGATACCATGGTGCCAATTGATTGTTTTGAGGAACCATGGGTTCTCTTTCGTGGAAAAGATGGGAAACCTGGATGTGTTCGGAATACCTGTGCACATAGAGCTTGCCCTCTTGACCTCGGTACAGTAAAAGATGGCCGTATTGCATGTCCATATCATGGATGGGAGTACTCAACTGATGGAAAATGTGAGAAGATGCCATCCACAAAATTACGCAATGTGAAGATTAAAGCATTGCCATGTTTTGAGCAAGATGGGATGTTATGGATTTGGCCTGGTGATGACCCTCCATCAGCCACTATTCCTTCTTTACAACCTCCTGCAGGATTTCAAATCCATGCTGAGCTGGTAATAGAACTCCCAGTGGAACATGGATTACTTCTGGATAATCTTTTAGATCTTGCGCATGCTCCTTTTACTCATACGTCCACCTTTGCCAAGGGATGGAGCGTTCCGAGCTTTGTGAAATTTTTGACACCTGCGTCCGGCCTGCAAGGGTATTGGGACCCATATCCTATTGATATGGAATTTCGACCACCTTGTATGGTACTCTCAACCATCGGGATCTCAAAGCCGGGAAAACTAGAAGGGCAGAGTACAAAGCAGTGCAGCACGCATCTTCATCAACTTCATGTGTGCTTACCTTCTTCTAGAAACAAAACAAGGTTACTATACAGAATGTCACTGGATTTTGCGCCTGTACTGAAGCACATTCCTTTCATGCACATTTTATGGAGGCATTTTGCAGAGCAGGTTTTGAATGAGGATTTAAGGCTTGTCCTTGGCCAACAAGAGCGCATGAACTGCGGGGAGAATGTCTGGAGTTGTCCTGTAACATACGACAAGCTAGGAGTGAGGTACAGGCTATGGAGGGAGGCTGTTGAACAAGGAATTAAGCAACTACCCTTCGCAACCAAATCAGTTTAG

Protein Analysis

409

Amino Acids

46.3

Weight (kDa)

8.2

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske PF00355 91 - 171 5.7e-25 Rieske [2Fe-2S] domain
VanA_C PF19112 275 - 394 2.3e-07 Vanillate O-demethylase oxygenase C-terminal domain
PaO PF08417 278 - 373 2.5e-18 Pheophorbide a oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 790
AasI GACNNNNNNGTC 1 cut(s) 784
Acc16I TGCGCA 1 cut(s) 708
Acc36I ACCTGC 2 cut(s) 790, 1045
Acc65I GGTACC 1 cut(s) 273
AccB1I GGYRCC 2 cut(s) 273, 316
AccB7I CCANNNNNTGG 2 cut(s) 461, 747
AciI CCGC 1 cut(s) 1110
AclWI GGATC 1 cut(s) 875
AcoI YGGCCR 2 cut(s) 439, 1087
AcsI RAATTY 3 cut(s) 265, 770, 830
AcuI CTGAAG 2 cut(s) 72, 1028
AfaI GTAC 8 cut(s) 169, 275, 427, 473, 852, 901, 1005, 1163
AfiI CCNNNNNNNGG 4 cut(s) 461, 626, 747, 788
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 6 cut(s) 223, 242, 262, 635, 1063, 1187
AjnI CCWGG 2 cut(s) 373, 577
AloI GAACNNNNNNTCC 2 cut(s) 738, 770
AluBI AGCT 5 cut(s) 115, 407, 649, 762, 1150
AluI AGCT 5 cut(s) 115, 407, 649, 762, 1150
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 396
AlwI GGATC 1 cut(s) 875
AoxI GGCC 4 cut(s) 439, 575, 790, 1087
ApaLI GTGCAC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 912
ApoI RAATTY 3 cut(s) 265, 770, 830
Asp718I GGTACC 1 cut(s) 273
AspLEI GCGC 3 cut(s) 709, 1000, 1101
AspS9I GGNCC 2 cut(s) 233, 808
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 2 cut(s) 115, 593
AvaII GGWCC 2 cut(s) 233, 808
BaeGI GKGCMC 1 cut(s) 400
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BalI TGGCCA 1 cut(s) 1089
BanI GGYRCC 2 cut(s) 273, 316
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 924
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 2 cut(s) 375, 579
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 3 cut(s) 887, 954, 1151
BfmI CTRYAG 1 cut(s) 624
BfrI CTTAAG 1 cut(s) 299
BfuAI ACCTGC 2 cut(s) 790, 1045
BglII AGATCT 1 cut(s) 700
BisI GCNGC 1 cut(s) 913
BlpI GCTNAGC 2 cut(s) 144, 645
BlsI GCNGC 1 cut(s) 914
BmcAI AGTACT 2 cut(s) 169, 473
Bme1390I CCNGG 3 cut(s) 375, 579, 879
Bme18I GGWCC 2 cut(s) 233, 808
BmgT120I GGNCC 2 cut(s) 233, 808
BmiI GGNNCC 5 cut(s) 275, 318, 339, 809, 810
BmrFI CCNGG 3 cut(s) 375, 579, 879
BmrI ACTGGG 2 cut(s) 159, 659
BmsI GCATC 4 cut(s) 130, 178, 489, 928
BmuI ACTGGG 2 cut(s) 159, 659
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpmI CTGGAG 1 cut(s) 1144
Bpu1102I GCTNAGC 2 cut(s) 144, 645
BpuMI CCSGG 1 cut(s) 879
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 5 cut(s) 312, 341, 421, 741, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 4 cut(s) 461, 626, 747, 788
Bse1I ACTGG 4 cut(s) 165, 236, 665, 993
Bse3DI GCAATG 2 cut(s) 526, 536
BseBI CCWGG 2 cut(s) 375, 579
BseDI CCNNGG 5 cut(s) 312, 341, 421, 741, 1084
BseGI GGATG 8 cut(s) 193, 250, 310, 383, 470, 503, 567, 752
BseLI CCNNNNNNNGG 4 cut(s) 461, 626, 747, 788
BseMI GCAATG 2 cut(s) 526, 536
BseMII CTCAG 2 cut(s) 135, 636
BseNI ACTGG 4 cut(s) 165, 236, 665, 993
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 1 cut(s) 924
BsgI GTGCAG 1 cut(s) 931
BshFI GGCC 4 cut(s) 441, 577, 792, 1089
BshNI GGYRCC 2 cut(s) 273, 316
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 2 cut(s) 789, 878
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 4 cut(s) 461, 626, 747, 788
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 821
BsnI GGCC 4 cut(s) 441, 577, 792, 1089
Bso31I GGTCTC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 700, 867
Bsp1720I GCTNAGC 2 cut(s) 144, 645
Bsp19I CCATGG 2 cut(s) 312, 341
BspACI CCGC 1 cut(s) 1110
BspANI GGCC 4 cut(s) 441, 577, 792, 1089
BspCNI CTCAG 2 cut(s) 136, 637
BspLI GGNNCC 5 cut(s) 275, 318, 339, 809, 810
BspMAI CTGCAG 1 cut(s) 628
BspMI ACCTGC 2 cut(s) 790, 1045
BspPI GGATC 1 cut(s) 875
BspT107I GGYRCC 2 cut(s) 273, 316
BspTI CTTAAG 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 526, 536
BsrI ACTGG 4 cut(s) 165, 236, 665, 993
BssECI CCNNGG 5 cut(s) 312, 341, 421, 741, 1084
BssMI GATC 2 cut(s) 700, 867
BssT1I CCWWGG 4 cut(s) 312, 341, 741, 1084
Bst2UI CCWGG 2 cut(s) 375, 579
Bst4CI ACNGT 1 cut(s) 430
BstAFI CTTAAG 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 1107
BstC8I GCNNGC 5 cut(s) 150, 409, 711, 794, 917
BstDEI CTNAG 2 cut(s) 144, 645
BstDSI CCRYGG 2 cut(s) 312, 341
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 8 cut(s) 193, 250, 310, 383, 470, 503, 567, 752
BstHHI GCGC 3 cut(s) 709, 1000, 1101
BstKTI GATC 2 cut(s) 703, 870
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 700, 867
BstMWI GCNNNNNNNGC 4 cut(s) 149, 404, 759, 1107
BstNI CCWGG 2 cut(s) 375, 579
BstNSI RCATGY 2 cut(s) 453, 713
BstSCI CCNGG 3 cut(s) 373, 577, 877
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 924
BstX2I RGATCY 2 cut(s) 700, 867
BstYI RGATCY 2 cut(s) 700, 867
BsuRI GGCC 4 cut(s) 441, 577, 792, 1089
BtgI CCRYGG 2 cut(s) 312, 341
BtsCI GGATG 8 cut(s) 193, 250, 310, 383, 470, 503, 567, 752
BtsI GCAGTG 1 cut(s) 914
BtsIMutI CAGTG 3 cut(s) 672, 914, 986
BveI ACCTGC 2 cut(s) 790, 1045
Cac8I GCNNGC 5 cut(s) 150, 409, 711, 794, 917
CfoI GCGC 3 cut(s) 709, 1000, 1101
Cfr13I GGNCC 2 cut(s) 233, 808
CseI GACGC 1 cut(s) 774
Csp6I GTAC 8 cut(s) 168, 274, 426, 472, 851, 900, 1004, 1162
CviQI GTAC 8 cut(s) 168, 274, 426, 472, 851, 900, 1004, 1162
DdeI CTNAG 2 cut(s) 144, 645
DpnI GATC 2 cut(s) 702, 869
DpnII GATC 2 cut(s) 700, 867
DrdI GACNNNNNNGTC 1 cut(s) 784
DseDI GACNNNNNNGTC 1 cut(s) 784
EaeI YGGCCR 2 cut(s) 439, 1087
Eco130I CCWWGG 4 cut(s) 312, 341, 741, 1084
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 233, 808
Eco57I CTGAAG 2 cut(s) 72, 1028
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 808
EcoRII CCWGG 2 cut(s) 373, 577
EcoT14I CCWWGG 4 cut(s) 312, 341, 741, 1084
ErhI CCWWGG 4 cut(s) 312, 341, 741, 1084
FaqI GGGAC 1 cut(s) 821
FauI CCCGC 1 cut(s) 1103
Fnu4HI GCNGC 1 cut(s) 913
FokI GGATG 8 cut(s) 200, 237, 317, 390, 477, 490, 574, 759
Fsp4HI GCNGC 1 cut(s) 913
FspBI CTAG 3 cut(s) 887, 954, 1151
FspI TGCGCA 1 cut(s) 708
GlaI GCGC 3 cut(s) 708, 999, 1100
GluI GCNGC 1 cut(s) 913
GsuI CTGGAG 1 cut(s) 1144
HaeIII GGCC 4 cut(s) 441, 577, 792, 1089
HapII CCGG 2 cut(s) 789, 878
HgaI GACGC 1 cut(s) 774
HhaI GCGC 3 cut(s) 709, 1000, 1101
Hin6I GCGC 3 cut(s) 707, 998, 1099
HinP1I GCGC 3 cut(s) 707, 998, 1099
HpaII CCGG 2 cut(s) 789, 878
HphI GGTGA 2 cut(s) 115, 593
Hpy166II GTNNAC 2 cut(s) 398, 732
Hpy188I TCNGA 4 cut(s) 52, 213, 387, 759
Hpy188III TCNNGA 5 cut(s) 416, 686, 865, 954, 1123
Hpy8I GTNNAC 2 cut(s) 398, 732
HpyAV CCTTC 6 cut(s) 168, 295, 618, 884, 957, 1219
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 1 cut(s) 728
HpyCH4V TGCA 8 cut(s) 16, 398, 449, 626, 796, 912, 1027, 1049
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 404, 759, 1107
HpyF3I CTNAG 2 cut(s) 144, 645
HpySE526I ACGT 1 cut(s) 728
HspAI GCGC 3 cut(s) 707, 998, 1099
KflI GGGWCCC 1 cut(s) 808
KpnI GGTACC 1 cut(s) 277
Kzo9I GATC 2 cut(s) 700, 867
LmnI GCTCC 2 cut(s) 718, 750
Lsp1109I GCAGC 1 cut(s) 924
LweI GCATC 4 cut(s) 130, 178, 489, 928
MaeI CTAG 3 cut(s) 887, 954, 1151
MaeII ACGT 1 cut(s) 728
MaeIII GTNAC 4 cut(s) 117, 969, 984, 1135
MalI GATC 2 cut(s) 702, 869
MboI GATC 2 cut(s) 700, 867
MboII GAAGA 6 cut(s) 107, 274, 508, 538, 914, 942
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 2 cut(s) 700, 867
MhlI GDGCHC 1 cut(s) 400
MlsI TGGCCA 1 cut(s) 1089
MluCI AATT 8 cut(s) 80, 98, 265, 321, 512, 770, 830, 1194
MluNI TGGCCA 1 cut(s) 1089
Mox20I TGGCCA 1 cut(s) 1089
MscI TGGCCA 1 cut(s) 1089
MseI TTAA 5 cut(s) 20, 300, 531, 1073, 1197
MslI CAYNNNNRTG 1 cut(s) 541
Msp20I TGGCCA 1 cut(s) 1089
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 2 cut(s) 789, 878
MspR9I CCNGG 3 cut(s) 375, 579, 879
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 2 cut(s) 375, 579
MwoI GCNNNNNNNGC 4 cut(s) 149, 404, 759, 1107
NciI CCSGG 1 cut(s) 879
NcoI CCATGG 2 cut(s) 312, 341
NdeII GATC 2 cut(s) 700, 867
NlaIV GGNNCC 5 cut(s) 275, 318, 339, 809, 810
NmuCI GTSAC 1 cut(s) 984
NsbI TGCGCA 1 cut(s) 708
NspI RCATGY 2 cut(s) 453, 713
PaeI GCATGC 1 cut(s) 713
PaqCI CACCTGC 1 cut(s) 790
PflMI CCANNNNNTGG 2 cut(s) 461, 747
PkrI GCNGC 1 cut(s) 914
PpuMI RGGWCCY 1 cut(s) 808
Psp5II RGGWCCY 1 cut(s) 808
Psp6I CCWGG 2 cut(s) 373, 577
PspGI CCWGG 2 cut(s) 373, 577
PspN4I GGNNCC 5 cut(s) 275, 318, 339, 809, 810
PspPI GGNCC 2 cut(s) 233, 808
PspPPI RGGWCCY 1 cut(s) 808
PsrI GAACNNNNNNTAC 2 cut(s) 663, 695
PstI CTGCAG 1 cut(s) 628
PsuI RGATCY 2 cut(s) 700, 867
RsaI GTAC 8 cut(s) 169, 275, 427, 473, 852, 901, 1005, 1163
RsaNI GTAC 8 cut(s) 168, 274, 426, 472, 851, 900, 1004, 1162
RseI CAYNNNNRTG 1 cut(s) 541
SaqAI TTAA 5 cut(s) 20, 300, 531, 1073, 1197
SatI GCNGC 1 cut(s) 913
Sau3AI GATC 2 cut(s) 700, 867
Sau96I GGNCC 2 cut(s) 233, 808
SbfI CCTGCAGG 1 cut(s) 628
ScaI AGTACT 2 cut(s) 169, 473
ScrFI CCNGG 3 cut(s) 375, 579, 879
SdaI CCTGCAGG 1 cut(s) 628
SduI GDGCHC 1 cut(s) 400
SfaNI GCATC 4 cut(s) 130, 178, 489, 928
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 2 cut(s) 233, 808
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 713
Sse8387I CCTGCAGG 1 cut(s) 628
Sse9I AATT 8 cut(s) 80, 98, 265, 321, 512, 770, 830, 1194
SsiI CCGC 1 cut(s) 1110
SspMI CTAG 3 cut(s) 887, 954, 1151
StyD4I CCNGG 3 cut(s) 373, 577, 877
StyI CCWWGG 4 cut(s) 312, 341, 741, 1084
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 1 cut(s) 731
TaqI TCGA 2 cut(s) 256, 835
TasI AATT 8 cut(s) 80, 98, 265, 321, 512, 770, 830, 1194
TatI WGTACW 4 cut(s) 167, 471, 899, 1003
Tru1I TTAA 5 cut(s) 20, 300, 531, 1073, 1197
Tru9I TTAA 5 cut(s) 20, 300, 531, 1073, 1197
TscAI CASTG 3 cut(s) 672, 914, 993
TseFI GTSAC 1 cut(s) 984
TseI GCWGC 1 cut(s) 912
Tsp45I GTSAC 1 cut(s) 984
TspDTI ATGAA 7 cut(s) 32, 42, 79, 914, 923, 1012, 1118
TspRI CASTG 3 cut(s) 672, 914, 993
Van91I CCANNNNNTGG 2 cut(s) 461, 747
Vha464I CTTAAG 1 cut(s) 299
VneI GTGCAC 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 233, 808
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 3 cut(s) 265, 770, 830
XbaI TCTAGA 1 cut(s) 953
XceI RCATGY 2 cut(s) 453, 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 462
XspI CTAG 3 cut(s) 887, 954, 1151
ZrmI AGTACT 2 cut(s) 169, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.