Chlorophyllide a oxygenase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G44446 AT1G44446 AT1G44446 AT1G44446 |
| fragaria_vesca | FvH4_2g27000 FvH4_2g27000 FvH4_2g27000 FvH4_2g27000 FvH4_2g27000 FvH4_2g27000 FvH4_2g27000 |
| malus_domestica | MD08G1162200.v1.1 MD15G1347600.v1.1 |
| prunus_persica | Prupe.1G495400_v2.0.a1 |
| pyrus_communis | pycom08g14010 pycom15g31160 |
| rosa_chinensis | RchiOBHm_Chr6g0295881 |
| rosa_laevigata | RLG00000011760 |
| rosa_multiflora | Rmu_sc0003139.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00172090 |
| rosa_rugosa | Rorug06G0255000 |
| rosa_samantha | Rh6AG368500 Rh6BG376300 Rh6CG382400 Rh6DG369000 |
| rosa_wichuraiana | Rw6G032130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 790 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 784 |
| Acc16I | TGCGCA | 1 cut(s) | 708 |
| Acc36I | ACCTGC | 2 cut(s) | 790, 1045 |
| Acc65I | GGTACC | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 2 cut(s) | 273, 316 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 461, 747 |
| AciI | CCGC | 1 cut(s) | 1110 |
| AclWI | GGATC | 1 cut(s) | 875 |
| AcoI | YGGCCR | 2 cut(s) | 439, 1087 |
| AcsI | RAATTY | 3 cut(s) | 265, 770, 830 |
| AcuI | CTGAAG | 2 cut(s) | 72, 1028 |
| AfaI | GTAC | 8 cut(s) | 169, 275, 427, 473, 852, 901, 1005, 1163 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 461, 626, 747, 788 |
| AflII | CTTAAG | 1 cut(s) | 299 |
| AgsI | TTSAA | 6 cut(s) | 223, 242, 262, 635, 1063, 1187 |
| AjnI | CCWGG | 2 cut(s) | 373, 577 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 738, 770 |
| AluBI | AGCT | 5 cut(s) | 115, 407, 649, 762, 1150 |
| AluI | AGCT | 5 cut(s) | 115, 407, 649, 762, 1150 |
| Alw21I | GWGCWC | 1 cut(s) | 400 |
| Alw26I | GTCTC | 1 cut(s) | 213 |
| Alw44I | GTGCAC | 1 cut(s) | 396 |
| AlwI | GGATC | 1 cut(s) | 875 |
| AoxI | GGCC | 4 cut(s) | 439, 575, 790, 1087 |
| ApaLI | GTGCAC | 1 cut(s) | 396 |
| ApeKI | GCWGC | 1 cut(s) | 912 |
| ApoI | RAATTY | 3 cut(s) | 265, 770, 830 |
| Asp718I | GGTACC | 1 cut(s) | 273 |
| AspLEI | GCGC | 3 cut(s) | 709, 1000, 1101 |
| AspS9I | GGNCC | 2 cut(s) | 233, 808 |
| AsuC2I | CCSGG | 1 cut(s) | 879 |
| AsuHPI | GGTGA | 2 cut(s) | 115, 593 |
| AvaII | GGWCC | 2 cut(s) | 233, 808 |
| BaeGI | GKGCMC | 1 cut(s) | 400 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 300, 333 |
| BalI | TGGCCA | 1 cut(s) | 1089 |
| BanI | GGYRCC | 2 cut(s) | 273, 316 |
| Bbv12I | GWGCWC | 1 cut(s) | 400 |
| BbvI | GCAGC | 1 cut(s) | 924 |
| BceAI | ACGGC | 1 cut(s) | 426 |
| BciT130I | CCWGG | 2 cut(s) | 375, 579 |
| BcnI | CCSGG | 1 cut(s) | 879 |
| BcoDI | GTCTC | 1 cut(s) | 213 |
| BfaI | CTAG | 3 cut(s) | 887, 954, 1151 |
| BfmI | CTRYAG | 1 cut(s) | 624 |
| BfrI | CTTAAG | 1 cut(s) | 299 |
| BfuAI | ACCTGC | 2 cut(s) | 790, 1045 |
| BglII | AGATCT | 1 cut(s) | 700 |
| BisI | GCNGC | 1 cut(s) | 913 |
| BlpI | GCTNAGC | 2 cut(s) | 144, 645 |
| BlsI | GCNGC | 1 cut(s) | 914 |
| BmcAI | AGTACT | 2 cut(s) | 169, 473 |
| Bme1390I | CCNGG | 3 cut(s) | 375, 579, 879 |
| Bme18I | GGWCC | 2 cut(s) | 233, 808 |
| BmgT120I | GGNCC | 2 cut(s) | 233, 808 |
| BmiI | GGNNCC | 5 cut(s) | 275, 318, 339, 809, 810 |
| BmrFI | CCNGG | 3 cut(s) | 375, 579, 879 |
| BmrI | ACTGGG | 2 cut(s) | 159, 659 |
| BmsI | GCATC | 4 cut(s) | 130, 178, 489, 928 |
| BmuI | ACTGGG | 2 cut(s) | 159, 659 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 193, 225 |
| BpmI | CTGGAG | 1 cut(s) | 1144 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 144, 645 |
| BpuMI | CCSGG | 1 cut(s) | 879 |
| BsaI | GGTCTC | 1 cut(s) | 213 |
| BsaJI | CCNNGG | 5 cut(s) | 312, 341, 421, 741, 1084 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 145, 175 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 461, 626, 747, 788 |
| Bse1I | ACTGG | 4 cut(s) | 165, 236, 665, 993 |
| Bse3DI | GCAATG | 2 cut(s) | 526, 536 |
| BseBI | CCWGG | 2 cut(s) | 375, 579 |
| BseDI | CCNNGG | 5 cut(s) | 312, 341, 421, 741, 1084 |
| BseGI | GGATG | 8 cut(s) | 193, 250, 310, 383, 470, 503, 567, 752 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 461, 626, 747, 788 |
| BseMI | GCAATG | 2 cut(s) | 526, 536 |
| BseMII | CTCAG | 2 cut(s) | 135, 636 |
| BseNI | ACTGG | 4 cut(s) | 165, 236, 665, 993 |
| BseRI | GAGGAG | 1 cut(s) | 217 |
| BseSI | GKGCMC | 1 cut(s) | 400 |
| BseXI | GCAGC | 1 cut(s) | 924 |
| BsgI | GTGCAG | 1 cut(s) | 931 |
| BshFI | GGCC | 4 cut(s) | 441, 577, 792, 1089 |
| BshNI | GGYRCC | 2 cut(s) | 273, 316 |
| BsiHKAI | GWGCWC | 1 cut(s) | 400 |
| BsiSI | CCGG | 2 cut(s) | 789, 878 |
| BslFI | GGGAC | 1 cut(s) | 821 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 461, 626, 747, 788 |
| BsmAI | GTCTC | 1 cut(s) | 213 |
| BsmFI | GGGAC | 1 cut(s) | 821 |
| BsnI | GGCC | 4 cut(s) | 441, 577, 792, 1089 |
| Bso31I | GGTCTC | 1 cut(s) | 213 |
| Bsp1286I | GDGCHC | 1 cut(s) | 400 |
| Bsp143I | GATC | 2 cut(s) | 700, 867 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 144, 645 |
| Bsp19I | CCATGG | 2 cut(s) | 312, 341 |
| BspACI | CCGC | 1 cut(s) | 1110 |
| BspANI | GGCC | 4 cut(s) | 441, 577, 792, 1089 |
| BspCNI | CTCAG | 2 cut(s) | 136, 637 |
| BspLI | GGNNCC | 5 cut(s) | 275, 318, 339, 809, 810 |
| BspMAI | CTGCAG | 1 cut(s) | 628 |
| BspMI | ACCTGC | 2 cut(s) | 790, 1045 |
| BspPI | GGATC | 1 cut(s) | 875 |
| BspT107I | GGYRCC | 2 cut(s) | 273, 316 |
| BspTI | CTTAAG | 1 cut(s) | 299 |
| BspTNI | GGTCTC | 1 cut(s) | 213 |
| BsrDI | GCAATG | 2 cut(s) | 526, 536 |
| BsrI | ACTGG | 4 cut(s) | 165, 236, 665, 993 |
| BssECI | CCNNGG | 5 cut(s) | 312, 341, 421, 741, 1084 |
| BssMI | GATC | 2 cut(s) | 700, 867 |
| BssT1I | CCWWGG | 4 cut(s) | 312, 341, 741, 1084 |
| Bst2UI | CCWGG | 2 cut(s) | 375, 579 |
| Bst4CI | ACNGT | 1 cut(s) | 430 |
| BstAFI | CTTAAG | 1 cut(s) | 299 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1107 |
| BstC8I | GCNNGC | 5 cut(s) | 150, 409, 711, 794, 917 |
| BstDEI | CTNAG | 2 cut(s) | 144, 645 |
| BstDSI | CCRYGG | 2 cut(s) | 312, 341 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 624 |
| BstF5I | GGATG | 8 cut(s) | 193, 250, 310, 383, 470, 503, 567, 752 |
| BstHHI | GCGC | 3 cut(s) | 709, 1000, 1101 |
| BstKTI | GATC | 2 cut(s) | 703, 870 |
| BstMAI | GTCTC | 1 cut(s) | 213 |
| BstMBI | GATC | 2 cut(s) | 700, 867 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 149, 404, 759, 1107 |
| BstNI | CCWGG | 2 cut(s) | 375, 579 |
| BstNSI | RCATGY | 2 cut(s) | 453, 713 |
| BstSCI | CCNGG | 3 cut(s) | 373, 577, 877 |
| BstSFI | CTRYAG | 1 cut(s) | 624 |
| BstSLI | GKGCMC | 1 cut(s) | 400 |
| BstV1I | GCAGC | 1 cut(s) | 924 |
| BstX2I | RGATCY | 2 cut(s) | 700, 867 |
| BstYI | RGATCY | 2 cut(s) | 700, 867 |
| BsuRI | GGCC | 4 cut(s) | 441, 577, 792, 1089 |
| BtgI | CCRYGG | 2 cut(s) | 312, 341 |
| BtsCI | GGATG | 8 cut(s) | 193, 250, 310, 383, 470, 503, 567, 752 |
| BtsI | GCAGTG | 1 cut(s) | 914 |
| BtsIMutI | CAGTG | 3 cut(s) | 672, 914, 986 |
| BveI | ACCTGC | 2 cut(s) | 790, 1045 |
| Cac8I | GCNNGC | 5 cut(s) | 150, 409, 711, 794, 917 |
| CfoI | GCGC | 3 cut(s) | 709, 1000, 1101 |
| Cfr13I | GGNCC | 2 cut(s) | 233, 808 |
| CseI | GACGC | 1 cut(s) | 774 |
| Csp6I | GTAC | 8 cut(s) | 168, 274, 426, 472, 851, 900, 1004, 1162 |
| CviQI | GTAC | 8 cut(s) | 168, 274, 426, 472, 851, 900, 1004, 1162 |
| DdeI | CTNAG | 2 cut(s) | 144, 645 |
| DpnI | GATC | 2 cut(s) | 702, 869 |
| DpnII | GATC | 2 cut(s) | 700, 867 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 784 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 784 |
| EaeI | YGGCCR | 2 cut(s) | 439, 1087 |
| Eco130I | CCWWGG | 4 cut(s) | 312, 341, 741, 1084 |
| Eco31I | GGTCTC | 1 cut(s) | 213 |
| Eco47I | GGWCC | 2 cut(s) | 233, 808 |
| Eco57I | CTGAAG | 2 cut(s) | 72, 1028 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 624 |
| EcoO109I | RGGNCCY | 1 cut(s) | 808 |
| EcoRII | CCWGG | 2 cut(s) | 373, 577 |
| EcoT14I | CCWWGG | 4 cut(s) | 312, 341, 741, 1084 |
| ErhI | CCWWGG | 4 cut(s) | 312, 341, 741, 1084 |
| FaqI | GGGAC | 1 cut(s) | 821 |
| FauI | CCCGC | 1 cut(s) | 1103 |
| Fnu4HI | GCNGC | 1 cut(s) | 913 |
| FokI | GGATG | 8 cut(s) | 200, 237, 317, 390, 477, 490, 574, 759 |
| Fsp4HI | GCNGC | 1 cut(s) | 913 |
| FspBI | CTAG | 3 cut(s) | 887, 954, 1151 |
| FspI | TGCGCA | 1 cut(s) | 708 |
| GlaI | GCGC | 3 cut(s) | 708, 999, 1100 |
| GluI | GCNGC | 1 cut(s) | 913 |
| GsuI | CTGGAG | 1 cut(s) | 1144 |
| HaeIII | GGCC | 4 cut(s) | 441, 577, 792, 1089 |
| HapII | CCGG | 2 cut(s) | 789, 878 |
| HgaI | GACGC | 1 cut(s) | 774 |
| HhaI | GCGC | 3 cut(s) | 709, 1000, 1101 |
| Hin6I | GCGC | 3 cut(s) | 707, 998, 1099 |
| HinP1I | GCGC | 3 cut(s) | 707, 998, 1099 |
| HpaII | CCGG | 2 cut(s) | 789, 878 |
| HphI | GGTGA | 2 cut(s) | 115, 593 |
| Hpy166II | GTNNAC | 2 cut(s) | 398, 732 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 213, 387, 759 |
| Hpy188III | TCNNGA | 5 cut(s) | 416, 686, 865, 954, 1123 |
| Hpy8I | GTNNAC | 2 cut(s) | 398, 732 |
| HpyAV | CCTTC | 6 cut(s) | 168, 295, 618, 884, 957, 1219 |
| HpyCH4III | ACNGT | 1 cut(s) | 430 |
| HpyCH4IV | ACGT | 1 cut(s) | 728 |
| HpyCH4V | TGCA | 8 cut(s) | 16, 398, 449, 626, 796, 912, 1027, 1049 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 149, 404, 759, 1107 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 645 |
| HpySE526I | ACGT | 1 cut(s) | 728 |
| HspAI | GCGC | 3 cut(s) | 707, 998, 1099 |
| KflI | GGGWCCC | 1 cut(s) | 808 |
| KpnI | GGTACC | 1 cut(s) | 277 |
| Kzo9I | GATC | 2 cut(s) | 700, 867 |
| LmnI | GCTCC | 2 cut(s) | 718, 750 |
| Lsp1109I | GCAGC | 1 cut(s) | 924 |
| LweI | GCATC | 4 cut(s) | 130, 178, 489, 928 |
| MaeI | CTAG | 3 cut(s) | 887, 954, 1151 |
| MaeII | ACGT | 1 cut(s) | 728 |
| MaeIII | GTNAC | 4 cut(s) | 117, 969, 984, 1135 |
| MalI | GATC | 2 cut(s) | 702, 869 |
| MboI | GATC | 2 cut(s) | 700, 867 |
| MboII | GAAGA | 6 cut(s) | 107, 274, 508, 538, 914, 942 |
| MfeI | CAATTG | 1 cut(s) | 321 |
| MflI | RGATCY | 2 cut(s) | 700, 867 |
| MhlI | GDGCHC | 1 cut(s) | 400 |
| MlsI | TGGCCA | 1 cut(s) | 1089 |
| MluCI | AATT | 8 cut(s) | 80, 98, 265, 321, 512, 770, 830, 1194 |
| MluNI | TGGCCA | 1 cut(s) | 1089 |
| Mox20I | TGGCCA | 1 cut(s) | 1089 |
| MscI | TGGCCA | 1 cut(s) | 1089 |
| MseI | TTAA | 5 cut(s) | 20, 300, 531, 1073, 1197 |
| MslI | CAYNNNNRTG | 1 cut(s) | 541 |
| Msp20I | TGGCCA | 1 cut(s) | 1089 |
| MspCI | CTTAAG | 1 cut(s) | 299 |
| MspI | CCGG | 2 cut(s) | 789, 878 |
| MspR9I | CCNGG | 3 cut(s) | 375, 579, 879 |
| MunI | CAATTG | 1 cut(s) | 321 |
| MvaI | CCWGG | 2 cut(s) | 375, 579 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 149, 404, 759, 1107 |
| NciI | CCSGG | 1 cut(s) | 879 |
| NcoI | CCATGG | 2 cut(s) | 312, 341 |
| NdeII | GATC | 2 cut(s) | 700, 867 |
| NlaIV | GGNNCC | 5 cut(s) | 275, 318, 339, 809, 810 |
| NmuCI | GTSAC | 1 cut(s) | 984 |
| NsbI | TGCGCA | 1 cut(s) | 708 |
| NspI | RCATGY | 2 cut(s) | 453, 713 |
| PaeI | GCATGC | 1 cut(s) | 713 |
| PaqCI | CACCTGC | 1 cut(s) | 790 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 461, 747 |
| PkrI | GCNGC | 1 cut(s) | 914 |
| PpuMI | RGGWCCY | 1 cut(s) | 808 |
| Psp5II | RGGWCCY | 1 cut(s) | 808 |
| Psp6I | CCWGG | 2 cut(s) | 373, 577 |
| PspGI | CCWGG | 2 cut(s) | 373, 577 |
| PspN4I | GGNNCC | 5 cut(s) | 275, 318, 339, 809, 810 |
| PspPI | GGNCC | 2 cut(s) | 233, 808 |
| PspPPI | RGGWCCY | 1 cut(s) | 808 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 663, 695 |
| PstI | CTGCAG | 1 cut(s) | 628 |
| PsuI | RGATCY | 2 cut(s) | 700, 867 |
| RsaI | GTAC | 8 cut(s) | 169, 275, 427, 473, 852, 901, 1005, 1163 |
| RsaNI | GTAC | 8 cut(s) | 168, 274, 426, 472, 851, 900, 1004, 1162 |
| RseI | CAYNNNNRTG | 1 cut(s) | 541 |
| SaqAI | TTAA | 5 cut(s) | 20, 300, 531, 1073, 1197 |
| SatI | GCNGC | 1 cut(s) | 913 |
| Sau3AI | GATC | 2 cut(s) | 700, 867 |
| Sau96I | GGNCC | 2 cut(s) | 233, 808 |
| SbfI | CCTGCAGG | 1 cut(s) | 628 |
| ScaI | AGTACT | 2 cut(s) | 169, 473 |
| ScrFI | CCNGG | 3 cut(s) | 375, 579, 879 |
| SdaI | CCTGCAGG | 1 cut(s) | 628 |
| SduI | GDGCHC | 1 cut(s) | 400 |
| SfaNI | GCATC | 4 cut(s) | 130, 178, 489, 928 |
| SfcI | CTRYAG | 1 cut(s) | 624 |
| SinI | GGWCC | 2 cut(s) | 233, 808 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 541 |
| SmlI | CTYRAG | 1 cut(s) | 299 |
| SmoI | CTYRAG | 1 cut(s) | 299 |
| SphI | GCATGC | 1 cut(s) | 713 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 628 |
| Sse9I | AATT | 8 cut(s) | 80, 98, 265, 321, 512, 770, 830, 1194 |
| SsiI | CCGC | 1 cut(s) | 1110 |
| SspMI | CTAG | 3 cut(s) | 887, 954, 1151 |
| StyD4I | CCNGG | 3 cut(s) | 373, 577, 877 |
| StyI | CCWWGG | 4 cut(s) | 312, 341, 741, 1084 |
| TaaI | ACNGT | 1 cut(s) | 430 |
| TaiI | ACGT | 1 cut(s) | 731 |
| TaqI | TCGA | 2 cut(s) | 256, 835 |
| TasI | AATT | 8 cut(s) | 80, 98, 265, 321, 512, 770, 830, 1194 |
| TatI | WGTACW | 4 cut(s) | 167, 471, 899, 1003 |
| Tru1I | TTAA | 5 cut(s) | 20, 300, 531, 1073, 1197 |
| Tru9I | TTAA | 5 cut(s) | 20, 300, 531, 1073, 1197 |
| TscAI | CASTG | 3 cut(s) | 672, 914, 993 |
| TseFI | GTSAC | 1 cut(s) | 984 |
| TseI | GCWGC | 1 cut(s) | 912 |
| Tsp45I | GTSAC | 1 cut(s) | 984 |
| TspDTI | ATGAA | 7 cut(s) | 32, 42, 79, 914, 923, 1012, 1118 |
| TspRI | CASTG | 3 cut(s) | 672, 914, 993 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 461, 747 |
| Vha464I | CTTAAG | 1 cut(s) | 299 |
| VneI | GTGCAC | 1 cut(s) | 396 |
| VpaK11BI | GGWCC | 2 cut(s) | 233, 808 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 624 |
| XapI | RAATTY | 3 cut(s) | 265, 770, 830 |
| XbaI | TCTAGA | 1 cut(s) | 953 |
| XceI | RCATGY | 2 cut(s) | 453, 713 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 462 |
| XspI | CTAG | 3 cut(s) | 887, 954, 1151 |
| ZrmI | AGTACT | 2 cut(s) | 169, 473 |