AT1G44760

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012132
Physical Location & Seq
Reverse (-)
16896679 .. 16898645
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44760.1

Sequence Viewer

Length: 642 bp
ATGCAATTTTCAAGAAACTCAATCCTTAGGCAACTAAGCCGAAAAGAAGGTTGGAGATCGGCTTCTAAAAGGTGGACTTCCGGAGATAGCTCAACAGCCTTCAACGACGACACAAGTGGTGGTGGTTACTCATCAATGGAGGGTCTTTATGGAGTTTACTCCGGTGGAGACACGGCGGCGAGAAGTAAGAGAGTGATGGTTGTAGTTGATGAAAGTTCGAGGTCTAAGCATGCTATGATGTGGGCTTTGACTCATTTGACTAACAAAGGAGATTTAGTGACTCTTCTTCATGTTGTGTCTCCTGATGATGAAGCTACTCCTTCTTTGGCTCAATCTCTTGGTTCTCTTTGCAAAGCTTGTAAACCCGAGGTGGATGTGGAGGCATTGGTGATTCAAGGACCAAAGCTAGCAACAGTGTTAAGCCAAGTAAAGAAACTTGAAGTCTCTGTTCTTGTGTTGGGTCAGAAGAAATCTGCACCACTCATCTCTTGCTTATGTGGACCTAGCAGATCAGAGGAGCTCGTGAATCGTTGCATCAACGGTGCAGATTGTTTAACGATTGGTGTGAGAAAACAATGCAAAGGTGTTGGTGGGTACTTGATCAATACACGATGGCAGAAGAATTTCTGGCTCTTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

213

Amino Acids

23.08

Weight (kDa)

9.21

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 63 - 161 5.1e-08 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44760 AT1G44760
fragaria_vesca FvH4_2g26790
malus_domestica MD08G1165100.v1.1 MD15G1350900.v1.1
prunus_persica Prupe.1G499800_v2.0.a1
pyrus_communis pycom15g31340
rosa_chinensis RchiOBHm_Chr6g0295651
rosa_laevigata RLG00000011779
rosa_multiflora Rmu_sc0006802.1_g000009 Rmu_sc0015254.1_g000001
rosa_roxburghii Rroxscaffold_7G00172270
rosa_rugosa Rorug06G0253200 Rorug06G0253200
rosa_samantha Rh6AG366200 Rh6BG374400 Rh6CG380600 Rh6DG367500
rosa_wichuraiana Rw6G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 622
AfaI GTAC 1 cut(s) 596
AgsI TTSAA 4 cut(s) 12, 103, 395, 440
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 5 cut(s) 90, 314, 356, 406, 520
AluI AGCT 5 cut(s) 90, 314, 356, 406, 520
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 3 cut(s) 162, 303, 448
Ama87I CYCGRG 1 cut(s) 365
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 1 cut(s) 636
ApoI RAATTY 1 cut(s) 622
Asp700I GAANNNNTTC 1 cut(s) 623
AspS9I GGNCC 2 cut(s) 398, 500
AsuHPI GGTGA 1 cut(s) 400
AsuNHI GCTAGC 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 2 cut(s) 398, 500
AxyI CCTNAGG 1 cut(s) 26
BanII GRGCYC 1 cut(s) 522
BauI CACGAG 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 522
BccI CCATC 2 cut(s) 190, 606
BceAI ACGGC 1 cut(s) 189
BclI TGATCA 1 cut(s) 600
BcoDI GTCTC 3 cut(s) 162, 303, 448
BfaI CTAG 2 cut(s) 407, 504
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 2 cut(s) 398, 500
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 398, 500
BmsI GCATC 1 cut(s) 543
BmtI GCTAGC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 2 cut(s) 80, 161
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bse21I CCTNAGG 1 cut(s) 26
BseAI TCCGGA 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 530
BsgI GTGCAG 2 cut(s) 459, 564
BshFI GGCC 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 2 cut(s) 81, 162
BsmAI GTCTC 3 cut(s) 162, 303, 448
BsnI GGCC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 522
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 3 cut(s) 56, 509, 600
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 638
BspEI TCCGGA 1 cut(s) 80
BspOI GCTAGC 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 3 cut(s) 56, 509, 600
BssSI CACGAG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 521
Bst4CI ACNGT 2 cut(s) 415, 542
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 231, 408
BstDEI CTNAG 3 cut(s) 26, 35, 225
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 3 cut(s) 59, 512, 603
BstMAI GTCTC 3 cut(s) 162, 303, 448
BstMBI GATC 3 cut(s) 56, 509, 600
BstNSI RCATGY 1 cut(s) 233
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 638
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 231, 408
Cfr13I GGNCC 2 cut(s) 398, 500
Csp6I GTAC 1 cut(s) 595
CviAII CATG 2 cut(s) 230, 290
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 3 cut(s) 26, 35, 225
DpnI GATC 3 cut(s) 58, 511, 602
DpnII GATC 3 cut(s) 56, 509, 600
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 398, 500
Eco53kI GAGCTC 1 cut(s) 520
Eco81I CCTNAGG 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 522
FaeI CATG 2 cut(s) 233, 293
FaiI YATR 5 cut(s) 150, 231, 236, 291, 496
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FatI CATG 2 cut(s) 229, 289
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 407, 504
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 638
HapII CCGG 2 cut(s) 81, 162
Hin1II CATG 2 cut(s) 233, 293
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 4 cut(s) 250, 280, 391, 526
HpaII CCGG 2 cut(s) 81, 162
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 4 cut(s) 75, 157, 362, 500
Hpy188I TCNGA 2 cut(s) 465, 514
Hpy188III TCNNGA 4 cut(s) 12, 81, 302, 523
Hpy8I GTNNAC 4 cut(s) 75, 157, 362, 500
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 3 cut(s) 41, 109, 330
HpyCH4III ACNGT 2 cut(s) 415, 542
HpyCH4V TGCA 6 cut(s) 4, 351, 476, 534, 545, 579
HpyF3I CTNAG 3 cut(s) 26, 35, 225
Hsp92II CATG 2 cut(s) 233, 293
Kpn2I TCCGGA 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 3 cut(s) 56, 509, 600
LmnI GCTCC 1 cut(s) 517
LpnPI CCDG 4 cut(s) 94, 175, 315, 613
LweI GCATC 1 cut(s) 543
MaeI CTAG 2 cut(s) 407, 504
MaeIII GTNAC 2 cut(s) 125, 277
MalI GATC 3 cut(s) 58, 511, 602
MboI GATC 3 cut(s) 56, 509, 600
MboII GAAGA 4 cut(s) 275, 278, 478, 631
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 2 cut(s) 5, 622
MlyI GAGTC 2 cut(s) 244, 274
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 5 cut(s) 133, 213, 361, 373, 508
MroI TCCGGA 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 623
MseI TTAA 2 cut(s) 419, 554
MspI CCGG 2 cut(s) 81, 162
NdeII GATC 3 cut(s) 56, 509, 600
NheI GCTAGC 1 cut(s) 406
NlaIII CATG 2 cut(s) 233, 293
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 233
PaeI GCATGC 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 2 cut(s) 391, 526
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 2 cut(s) 244, 274
PpsI GAGTC 2 cut(s) 244, 274
Psp124BI GAGCTC 1 cut(s) 522
PspPI GGNCC 2 cut(s) 398, 500
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 2 cut(s) 419, 554
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 56, 509, 600
Sau96I GGNCC 2 cut(s) 398, 500
SchI GAGTC 2 cut(s) 244, 274
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 1 cut(s) 543
SinI GGWCC 2 cut(s) 398, 500
SphI GCATGC 1 cut(s) 233
Sse9I AATT 2 cut(s) 5, 622
SsiI CCGC 1 cut(s) 176
SspMI CTAG 2 cut(s) 407, 504
SstI GAGCTC 1 cut(s) 522
TaaI ACNGT 2 cut(s) 415, 542
TaqI TCGA 1 cut(s) 218
TasI AATT 2 cut(s) 5, 622
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 391, 526
Tru1I TTAA 2 cut(s) 419, 554
Tru9I TTAA 2 cut(s) 419, 554
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 225, 278, 324
TspRI CASTG 1 cut(s) 420
VpaK11BI GGWCC 2 cut(s) 398, 500
XapI RAATTY 1 cut(s) 622
XceI RCATGY 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 623
XspI CTAG 2 cut(s) 407, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.