MD15G1350900.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012132
Physical Location & Seq
Reverse (-)
41695552 .. 41697343
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1350900.v1.1.491

Sequence Viewer

Length: 690 bp
ATGCCAAAACCAAGTGCATTTTTGAGGCAATTGAGTGGAAGGGAGGCGTGGAAATCAAAATCAATGAGTTGGGGTGGTGTTGGAAATAGAAAGTCTTGCGGTGGTTTCAGCGGCGGAGTTGGGCTGTCTGAGGGGAAAGGAGGAAGCTTTCAGCAAATGGAAGGGCTTCAAAACATGTATGGCAACAACAATGGTGGTGGTGGTGGAGGATTCGGAATGAGGAAGAGAGTGATGGTGGTGGTGGATGACTCATCACATTCCAAGCATGCCATGATGTGGGCCCTCAGTCATGTTGCCAACAAGGGTGATTTGCTCACTCTCCTCCACATCATCCCTTCTTCCCATGACTCTTCCTATACCTCCTCCCCTTCCCTTGCCAACTCCCTTGGCTCCCTATGCAAGGCTTGCAAGCCTGAGGTGGAAGTGGAAGCTCTTGTGATCCAAGGACCAAGAGTGGCAACAGTGAACAGCCAGGTTAAGAAGCTTGAGGTTTCAGTGCTAGTGCTTGGTCAGAAGAAGCCCTCTCCCTTCATCAGCTGCTTATTTGGAACCAGCTCCACTGAGGATTTTGTGGAGCATTGCATAAACAATGCAGAGTGTTTGACAATTGGAGTGAGGAAGCAAAGCAAAGGTGTGAGTGGCTACCTTATCAACACCAGATGGCAGAAGGATTTCTGGCTCTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

230

Amino Acids

24.51

Weight (kDa)

9.37

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 73 - 194 3.1e-11 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44760 AT1G44760
fragaria_vesca FvH4_2g26790
malus_domestica MD08G1165100.v1.1 MD15G1350900.v1.1
prunus_persica Prupe.1G499800_v2.0.a1
pyrus_communis pycom15g31340
rosa_chinensis RchiOBHm_Chr6g0295651
rosa_laevigata RLG00000011779
rosa_multiflora Rmu_sc0006802.1_g000009 Rmu_sc0015254.1_g000001
rosa_roxburghii Rroxscaffold_7G00172270
rosa_rugosa Rorug06G0253200 Rorug06G0253200
rosa_samantha Rh6AG366200 Rh6BG374400 Rh6CG380600 Rh6DG367500
rosa_wichuraiana Rw6G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 276
AciI CCGC 3 cut(s) 99, 111, 114
AclWI GGATC 1 cut(s) 433
AfiI CCNNNNNNNGG 2 cut(s) 276, 400
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 5 cut(s) 147, 431, 484, 537, 555
AluI AGCT 5 cut(s) 147, 431, 484, 537, 555
AlwI GGATC 1 cut(s) 433
AoxI GGCC 1 cut(s) 279
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 537
Asp700I GAANNNNTTC 2 cut(s) 165, 671
AspS9I GGNCC 3 cut(s) 279, 280, 446
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 524
BccI CCATC 2 cut(s) 226, 654
BciT130I CCWGG 1 cut(s) 473
BfaI CTAG 1 cut(s) 500
BisI GCNGC 2 cut(s) 112, 538
BlsI GCNGC 2 cut(s) 113, 539
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 3 cut(s) 279, 280, 446
BmiI GGNNCC 3 cut(s) 281, 391, 550
BmrFI CCNGG 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 506
BsaJI CCNNGG 2 cut(s) 385, 442
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 400
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 385, 442
BseGI GGATG 2 cut(s) 250, 330
BseLI CCNNNNNNNGG 2 cut(s) 276, 400
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 4 cut(s) 120, 298, 405, 552
BseRI GAGGAG 2 cut(s) 311, 352
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 524
BshFI GGCC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 276, 400
BsnI GGCC 1 cut(s) 281
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 3 cut(s) 99, 111, 114
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 4 cut(s) 121, 297, 406, 553
BspLI GGNNCC 3 cut(s) 281, 391, 550
BspPI GGATC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 385, 442
BssMI GATC 1 cut(s) 438
BssT1I CCWWGG 2 cut(s) 385, 442
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 2 cut(s) 218, 355
BstAPI GCANNNNNTGC 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 267, 406, 410
BstDEI CTNAG 4 cut(s) 129, 284, 414, 561
BstENI CCTNNNNNAGG 1 cut(s) 398
BstF5I GGATG 2 cut(s) 250, 330
BstKTI GATC 1 cut(s) 441
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 2 cut(s) 396, 405
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 2 cut(s) 178, 269
BstSCI CCNGG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 250, 330
BtsIMutI CAGTG 3 cut(s) 468, 501, 558
Cac8I GCNNGC 3 cut(s) 267, 406, 410
Cfr13I GGNCC 3 cut(s) 279, 280, 446
CspCI CAANNNNNGTGG 4 cut(s) 175, 178, 210, 213
CviAII CATG 5 cut(s) 175, 266, 271, 290, 344
DdeI CTNAG 4 cut(s) 129, 284, 414, 561
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 218, 355
EarI CTCTTC 2 cut(s) 218, 355
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 385, 442
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 446
Eco81I CCTNAGG 1 cut(s) 414
EcoNI CCTNNNNNAGG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 385, 442
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 2 cut(s) 385, 442
FaeI CATG 5 cut(s) 178, 269, 274, 293, 347
FaiI YATR 9 cut(s) 176, 180, 267, 272, 291, 345, 357, 397, 584
FatI CATG 5 cut(s) 174, 265, 270, 289, 343
Fnu4HI GCNGC 2 cut(s) 112, 538
FokI GGATG 2 cut(s) 257, 317
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 2 cut(s) 112, 538
FspBI CTAG 1 cut(s) 500
GluI GCNGC 2 cut(s) 112, 538
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 5 cut(s) 178, 269, 274, 293, 347
HindIII AAGCTT 2 cut(s) 145, 482
HinfI GANTC 3 cut(s) 210, 248, 347
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 3 cut(s) 130, 215, 513
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 6 cut(s) 33, 155, 345, 378, 538, 661
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 5 cut(s) 17, 399, 408, 582, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 396, 405
HpyF3I CTNAG 4 cut(s) 129, 284, 414, 561
Hsp92II CATG 5 cut(s) 178, 269, 274, 293, 347
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 3 cut(s) 395, 560, 574
LpnPI CCDG 6 cut(s) 426, 458, 485, 565, 661, 670
Lsp1109I GCAGC 1 cut(s) 524
MaeI CTAG 1 cut(s) 500
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 4 cut(s) 235, 330, 342, 526
MfeI CAATTG 2 cut(s) 29, 606
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 2 cut(s) 29, 606
MlyI GAGTC 2 cut(s) 242, 341
MmeI TCCRAC 1 cut(s) 61
MroXI GAANNNNTTC 2 cut(s) 165, 671
MseI TTAA 2 cut(s) 477, 688
MspA1I CMGCKG 2 cut(s) 111, 537
MspR9I CCNGG 1 cut(s) 473
MunI CAATTG 2 cut(s) 29, 606
MvaI CCWGG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 396, 405
NdeII GATC 1 cut(s) 438
NlaIII CATG 5 cut(s) 178, 269, 274, 293, 347
NlaIV GGNNCC 3 cut(s) 281, 391, 550
NspI RCATGY 2 cut(s) 178, 269
PaeI GCATGC 1 cut(s) 269
PciI ACATGT 1 cut(s) 174
PdmI GAANNNNTTC 2 cut(s) 165, 671
PfeI GAWTC 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 276
PkrI GCNGC 2 cut(s) 113, 539
PleI GAGTC 2 cut(s) 242, 341
PpsI GAGTC 2 cut(s) 242, 341
PscI ACATGT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 3 cut(s) 281, 391, 550
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 3 cut(s) 279, 280, 446
PvuII CAGCTG 1 cut(s) 537
SaqAI TTAA 2 cut(s) 477, 688
SatI GCNGC 2 cut(s) 112, 538
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 3 cut(s) 279, 280, 446
SchI GAGTC 2 cut(s) 242, 341
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 1 cut(s) 283
SinI GGWCC 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SphI GCATGC 1 cut(s) 269
Sse9I AATT 2 cut(s) 29, 606
SsiI CCGC 3 cut(s) 99, 111, 114
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 2 cut(s) 385, 442
TaaI ACNGT 1 cut(s) 463
TasI AATT 2 cut(s) 29, 606
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 477, 688
Tru9I TTAA 2 cut(s) 477, 688
TscAI CASTG 3 cut(s) 468, 501, 565
TseI GCWGC 1 cut(s) 537
TspDTI ATGAA 1 cut(s) 520
TspRI CASTG 3 cut(s) 468, 501, 565
Van91I CCANNNNNTGG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 398
XceI RCATGY 2 cut(s) 178, 269
XmnI GAANNNNTTC 2 cut(s) 165, 671
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.